Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010198.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Forward (+)

27711 .. 28415

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010198.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcgcaaccaaactcagtgaaaatagtggagatttgcagggtggctccaaaaccaggcgcaccagatctgttgtcccttcctcttacctactttgacttgctctggctacggtttccacctgtacaacgcctttacttctatgaattaacatcttcttcctcttctaattcttcaacaagtgctgattctgaagtacttgcctatctcaaaacctcgctctctctcactctcaaacactttgtacctctcgccggaaacctaacttggcctcaagactcccacacaccccttctcagctatgtccaaggcgacactgtttcacttacagtagctgagtccgatgctgataatttcgaccacctttcgagcaacaacgtcgttctcatatccaaagcttatcatccacttgttccccaattggagtcgtctcatgaacgaactgcagccattgcattgcaaataaccctatttcctggccgtggcttcgccattggaacagccatgcaccatgcaatcctcgatggcaaaacatacatctcgttcgttaagtcatgggctcatgcatgcagtaaacaaattgaaattggcttgtccattggatcagatatttcgttactagagcagctcaagccattatatgatagaacggtcacctatgatccaactgggcttggactcgaaccaatctacttaaacgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

234

Amino Acids

25.68

Weight (kDa)

5.54

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	610, 656
AcoI	YGGCCR	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	126, 198, 246
AfiI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
AgsI	TTSAA	2 cut(s)	177, 584
AjnI	CCWGG	2 cut(s)	55, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	4 cut(s)	300, 335, 398, 628
AluI	AGCT	4 cut(s)	300, 335, 398, 628
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	610, 656
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	269, 478
ApeKI	GCWGC	2 cut(s)	446, 625
AspLEI	GCGC	2 cut(s)	7, 62
AsuHPI	GGTGA	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	458, 637
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	465
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	2 cut(s)	57, 477
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	444
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	447, 626
BlsI	GCNGC	2 cut(s)	448, 627
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	57, 477
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	57, 477
BmrI	ACTGGG	1 cut(s)	678
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	258, 614
BsaJI	CCNNGG	2 cut(s)	307, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 254, 482
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	2 cut(s)	450, 455
BseBI	CCWGG	2 cut(s)	57, 477
BseDI	CCNNGG	2 cut(s)	307, 481
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
BseMI	GCAATG	2 cut(s)	450, 455
BseMII	CTCAG	3 cut(s)	30, 310, 327
BseNI	ACTGG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	458, 637
BshFI	GGCC	2 cut(s)	271, 480
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	56, 254, 482
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	271, 480
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	67, 602, 661
BspANI	GGCC	2 cut(s)	271, 480
BspCNI	CTCAG	3 cut(s)	29, 309, 328
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	610, 656
BsrDI	GCAATG	2 cut(s)	450, 455
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	307, 481
BssMI	GATC	3 cut(s)	67, 602, 661
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	57, 477
Bst4CI	ACNGT	4 cut(s)	114, 319, 331, 652
Bst6I	CTCTTC	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	16, 296, 336
BstDSI	CCRYGG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	652
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	2 cut(s)	7, 62
BstKTI	GATC	3 cut(s)	70, 605, 664
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	3 cut(s)	67, 602, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 631
BstNI	CCWGG	2 cut(s)	57, 477
BstNSI	RCATGY	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	652
BstSCI	CCNGG	2 cut(s)	55, 475
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	458, 637
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	271, 480
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	24, 315
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	2 cut(s)	7, 62
Csp6I	GTAC	3 cut(s)	125, 197, 245
CviAII	CATG	6 cut(s)	434, 505, 512, 555, 563, 567
CviQI	GTAC	3 cut(s)	125, 197, 245
DdeI	CTNAG	3 cut(s)	16, 296, 336
DpnI	GATC	3 cut(s)	69, 604, 663
DpnII	GATC	3 cut(s)	67, 602, 661
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	55, 475
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	6 cut(s)	437, 508, 515, 558, 566, 570
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	6 cut(s)	433, 504, 511, 554, 562, 566
Fnu4HI	GCNGC	2 cut(s)	447, 626
FokI	GGATG	1 cut(s)	390
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	447, 626
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	2 cut(s)	6, 61
GluI	GCNGC	2 cut(s)	447, 626
HaeIII	GGCC	2 cut(s)	271, 480
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	7, 62
Hin1II	CATG	6 cut(s)	437, 508, 515, 558, 566, 570
Hin6I	GCGC	2 cut(s)	5, 60
HinP1I	GCGC	2 cut(s)	5, 60
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	5 cut(s)	188, 278, 338, 425, 678
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	575
Hpy188I	TCNGA	3 cut(s)	193, 343, 607
Hpy188III	TCNNGA	2 cut(s)	275, 434
Hpy8I	GTNNAC	1 cut(s)	575
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	89, 302
HpyCH4III	ACNGT	4 cut(s)	114, 319, 331, 652
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	8 cut(s)	39, 446, 455, 460, 508, 515, 566, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 631
HpyF3I	CTNAG	3 cut(s)	16, 296, 336
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	437, 508, 515, 558, 566, 570
HspAI	GCGC	2 cut(s)	5, 60
Kzo9I	GATC	3 cut(s)	67, 602, 661
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	458, 637
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	615, 652
MalI	GATC	3 cut(s)	69, 604, 663
MboI	GATC	3 cut(s)	67, 602, 661
MboII	GAAGA	4 cut(s)	147, 150, 156, 165
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	6 cut(s)	146, 169, 352, 419, 579, 585
MlyI	GAGTC	4 cut(s)	272, 347, 434, 672
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	6 cut(s)	93, 172, 226, 258, 282, 530
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	3 cut(s)	149, 549, 695
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	57, 477
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	57, 477
MwoI	GCNNNNNNNGC	2 cut(s)	452, 631
NdeII	GATC	3 cut(s)	67, 602, 661
NlaIII	CATG	6 cut(s)	437, 508, 515, 558, 566, 570
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	570
PaeI	GCATGC	1 cut(s)	570
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	448, 627
PleI	GAGTC	4 cut(s)	272, 346, 433, 672
PpsI	GAGTC	4 cut(s)	272, 346, 433, 672
Psp6I	CCWGG	2 cut(s)	55, 475
PspEI	GGTNACC	1 cut(s)	652
PspGI	CCWGG	2 cut(s)	55, 475
PspN4I	GGNNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	126, 198, 246
RsaNI	GTAC	3 cut(s)	125, 197, 245
SaqAI	TTAA	3 cut(s)	149, 549, 695
SatI	GCNGC	2 cut(s)	447, 626
Sau3AI	GATC	3 cut(s)	67, 602, 661
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	4 cut(s)	272, 347, 434, 672
ScrFI	CCNGG	2 cut(s)	57, 477
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	273, 629
SmoI	CTYRAG	2 cut(s)	273, 629
SphI	GCATGC	1 cut(s)	570
Sse9I	AATT	6 cut(s)	146, 169, 352, 419, 579, 585
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	55, 475
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	4 cut(s)	114, 319, 331, 652
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	357, 368, 522, 681
TasI	AATT	6 cut(s)	146, 169, 352, 419, 579, 585
TatI	WGTACW	2 cut(s)	124, 196
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	149, 549, 695
Tru9I	TTAA	3 cut(s)	149, 549, 695
TscAI	CASTG	2 cut(s)	24, 322
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	2 cut(s)	446, 625
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	159, 450
TspRI	CASTG	2 cut(s)	24, 322
XceI	RCATGY	1 cut(s)	570
XspI	CTAG	1 cut(s)	620
ZrmI	AGTACT	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.