Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

64526820 .. 64527439

Gene Structure 620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCTACCATTCCATGTGGTGTTAATTTGATATTCTTCCTCAATGGCCAACCAAACTCGGTGAAATTGGTGGAGATTTGCAGGGTGGCTCCAAAACCAGGTGCACCAGATCTGATGTCCCTTCCTCTGACCTACTTCGACTCGCACTTTCTAAGGTTTCCACCCGTACAACGCCTTTACTTCTATGAATTAACATCTTCTTCCTCTTCTTCTTCCACTAGTACTGATTTTGCAGCGCTTGCCTATCTCAAAACCTCGCTCTCTCTCACTCTCAAACACTTTGCACCTCTCGCCGGAAACCTAACTTGGCCTCAAGACTCCCACACACCCATTCTCTGCTATGTCCAAGGCGACGCCGTTTCACTCACAGTAGCTGAGTCCGATGCTGATAATTTCGACCACCTTTCGGGCAACAACGTCTTTCTCAAATCCAAAGCTTACCATCCACTTGTTCCCCAATTGGAGTCGTCTCATGAACTAACTGCAGCCATTTCATTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

168

Amino Acids

18.28

Weight (kDa)

6.02

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	29 - 160	1.3e-11	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	168, 223
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	98, 293, 406
AgsI	TTSAA	1 cut(s)	499
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	2 cut(s)	374, 437
AluI	AGCT	2 cut(s)	374, 437
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	474
Alw44I	GTGCAC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	374
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	2 cut(s)	46, 308
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	233, 485
AspLEI	GCGC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	245, 497
BccI	CCATC	1 cut(s)	450
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	474
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	239
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	2 cut(s)	234, 486
BlsI	GCNGC	2 cut(s)	235, 487
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 293, 406
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	98, 293, 406
BseMII	CTCAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	245, 497
BshFI	GGCC	2 cut(s)	48, 310
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	98, 293, 406
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	48, 310
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	48, 310
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	152, 375
BstF5I	GGATG	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 290
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	245, 497
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	48, 310
BtsCI	GGATG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	238
CseI	GACGC	1 cut(s)	362
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	167, 222
CviAII	CATG	2 cut(s)	15, 473
CviJI	RGCY	6 cut(s)	48, 89, 310, 374, 437, 488
CviKI_1	RGCY	6 cut(s)	48, 89, 310, 374, 437, 488
CviQI	GTAC	2 cut(s)	167, 222
DdeI	CTNAG	2 cut(s)	152, 375
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	346
Eco47III	AGCGCT	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	2 cut(s)	18, 476
FaiI	YATR	4 cut(s)	16, 186, 342, 474
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	14, 472
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	234, 486
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	2 cut(s)	234, 486
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	234, 486
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	48, 310
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	18, 476
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	4 cut(s)	140, 317, 377, 464
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	6, 104
Hpy188I	TCNGA	3 cut(s)	114, 129, 382
Hpy188III	TCNNGA	2 cut(s)	314, 473
Hpy8I	GTNNAC	2 cut(s)	6, 104
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	81, 104, 233, 284, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 290
HpyF3I	CTNAG	2 cut(s)	152, 375
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	18, 476
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	67, 84, 111, 120, 307
Lsp1109I	GCAGC	2 cut(s)	245, 497
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	417
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	6 cut(s)	28, 189, 192, 198, 201, 204
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	5 cut(s)	25, 65, 188, 391, 458
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	4 cut(s)	134, 311, 386, 473
MnlI	CCTC	6 cut(s)	50, 135, 214, 265, 297, 321
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	24, 191
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	239, 290
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	18, 476
NlaIV	GGNNCC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	235, 487
PleI	GAGTC	4 cut(s)	134, 311, 385, 472
PpsI	GAGTC	4 cut(s)	134, 311, 385, 472
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	168, 223
RsaNI	GTAC	2 cut(s)	167, 222
SaqAI	TTAA	2 cut(s)	24, 191
SatI	GCNGC	2 cut(s)	234, 486
Sau3AI	GATC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	4 cut(s)	134, 311, 386, 473
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	106
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	5 cut(s)	25, 65, 188, 391, 458
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	138, 396
TasI	AATT	5 cut(s)	25, 65, 188, 391, 458
TatI	WGTACW	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	24, 191
Tru9I	TTAA	2 cut(s)	24, 191
TseI	GCWGC	2 cut(s)	233, 485
TspDTI	ATGAA	3 cut(s)	201, 483, 489
VneI	GTGCAC	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.