Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004137.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 983

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

atgaattctgattcacttcatttgtcaacgtttgctctaacatgcgcctatacttgggtttgcttagtcaaggcagaagaaatcaaaggtgaaaaagtatttatatacctcagcgccaactacaggtctcgcttagatcctcctatatctgctaattactttggaaattgcaccggcggctgtgcagcagttgcagaaacaaaagggctactaggagaagatgggttcgttgtggctttaaaggcaattagtgaagctattatgggtttgaaaaatgagggagtacttctcgatggggctgagagttggctttcgaagttgtgtactgtgcaaggtggtgataggattctttcgactgctggctcgcctcgctttgagatttatgagactgattttggatggggaagaccaaagaggactgaggtgcttaccatagataagacaggatctatctctttttcagatagcaagaatggtggtggcatggaggcgttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

165

Amino Acids

17.69

Weight (kDa)

5.06

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	2 cut(s)	131, 454
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	285, 325
AfiI	CCNNNNNNNGG	2 cut(s)	54, 123
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	132, 380
AlwI	GGATC	2 cut(s)	131, 454
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	47, 116
AsuHPI	GGTGA	2 cut(s)	101, 350
AsuII	TTCGAA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	215, 287, 393
BcoDI	GTCTC	2 cut(s)	132, 380
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	2 cut(s)	178, 186
BlsI	GCNGC	2 cut(s)	179, 187
BmcAI	AGTACT	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 123
Bse118I	RCCGGY	1 cut(s)	173
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	2 cut(s)	54, 123
BseMII	CTCAG	3 cut(s)	124, 291, 411
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	54, 123
BsmAI	GTCTC	2 cut(s)	132, 380
Bso31I	GGTCTC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	136, 446
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	123, 292, 412
BspPI	GGATC	2 cut(s)	131, 454
BspT104I	TTCGAA	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	2 cut(s)	136, 446
Bst4CI	ACNGT	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	361, 365
BstDEI	CTNAG	5 cut(s)	64, 110, 133, 300, 420
BstF5I	GGATG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	47, 116
BstKTI	GATC	2 cut(s)	139, 449
BstMAI	GTCTC	2 cut(s)	132, 380
BstMBI	GATC	2 cut(s)	136, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 191, 242, 369
BstNSI	RCATGY	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	136, 446
BstYI	RGATCY	2 cut(s)	136, 446
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	361, 365
CfoI	GCGC	2 cut(s)	47, 116
Cfr10I	RCCGGY	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	284, 324
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	42, 484
CviJI	RGCY	7 cut(s)	180, 208, 236, 257, 299, 310, 363
CviKI_1	RGCY	7 cut(s)	180, 208, 236, 257, 299, 310, 363
CviQI	GTAC	2 cut(s)	284, 324
DdeI	CTNAG	5 cut(s)	64, 110, 133, 300, 420
DpnI	GATC	2 cut(s)	138, 448
DpnII	GATC	2 cut(s)	136, 446
DraI	TTTAAA	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	2 cut(s)	45, 487
FaiI	YATR	9 cut(s)	43, 51, 104, 106, 146, 263, 384, 434, 485
FatI	CATG	2 cut(s)	41, 483
Fnu4HI	GCNGC	2 cut(s)	178, 186
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	178, 186
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	46, 115
GluI	GCNGC	2 cut(s)	178, 186
HaeII	RGCGCY	1 cut(s)	117
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	2 cut(s)	47, 116
Hin1II	CATG	2 cut(s)	45, 487
Hin6I	GCGC	2 cut(s)	45, 114
HinP1I	GCGC	2 cut(s)	45, 114
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	11, 346
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	101, 350
Hpy166II	GTNNAC	2 cut(s)	27, 324
Hpy188I	TCNGA	2 cut(s)	10, 463
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	2 cut(s)	27, 324
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	171, 185, 194, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 191, 242, 369
HpyF3I	CTNAG	5 cut(s)	64, 110, 133, 300, 420
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	45, 487
HspAI	GCGC	2 cut(s)	45, 114
Kzo9I	GATC	2 cut(s)	136, 446
LpnPI	CCDG	4 cut(s)	109, 187, 345, 429
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	138, 448
MboI	GATC	2 cut(s)	136, 446
MboII	GAAGA	3 cut(s)	89, 230, 417
MflI	RGATCY	2 cut(s)	136, 446
MluCI	AATT	4 cut(s)	4, 154, 166, 246
MnlI	CCTC	7 cut(s)	119, 150, 271, 378, 408, 415, 481
MseI	TTAA	1 cut(s)	239
MspI	CCGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	177, 191, 242, 369
NdeII	GATC	2 cut(s)	136, 446
NlaIII	CATG	2 cut(s)	45, 487
NspI	RCATGY	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	11, 346
PkrI	GCNGC	2 cut(s)	179, 187
Psp1406I	AACGTT	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	136, 446
RsaI	GTAC	2 cut(s)	285, 325
RsaNI	GTAC	2 cut(s)	284, 324
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	178, 186
Sau3AI	GATC	2 cut(s)	136, 446
ScaI	AGTACT	1 cut(s)	285
SetI	ASST	7 cut(s)	32, 91, 111, 128, 259, 337, 426
SfcI	CTRYAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	314
SgrAI	CRCCGGYG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	4, 154, 166, 246
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	291, 314, 353
TasI	AATT	4 cut(s)	4, 154, 166, 246
TatI	WGTACW	2 cut(s)	283, 323
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	11, 346
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	8, 17
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	45
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.