Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8034280.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 432

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8034280.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

atgcaccacgccatcatggacggcaaatcttacacctcgttcattaagtcatgggctcggatatgcaaacatgtggctggatccgggtcctcttgtaccgtttcgttaccggaactgctacaaccattttatgacagaaccgtcgttcaggacccggccgggctcggagaactctactcaagccattacctagatgaccacggccccaacaacagaagcgtaacgccttcgaatttccttcattttgcagtggatgttaaaccagactcgatcagaggtaccttcgagctcacaagcgcgaaaatacaagcactcagagagcatgtgataaagactacaatggcttctgattcatcaccacttcatttgtcaactttttctttgacatgcgcgttctgttgggtttgctcagtcaaggctcaagaaatcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

6.69

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccII	CGCG	2 cut(s)	299, 392
AclWI	GGATC	2 cut(s)	75, 88
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	2 cut(s)	97, 280
AflIII	ACRYGT	1 cut(s)	70
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	75, 88
AoxI	GGCC	2 cut(s)	156, 202
ApoI	RAATTY	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	299, 392
AspS9I	GGNCC	3 cut(s)	87, 151, 203
AsuC2I	CCSGG	3 cut(s)	85, 155, 160
AsuHPI	GGTGA	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	87, 151
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	3 cut(s)	58, 165, 291
Bbv12I	GWGCWC	1 cut(s)	291
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	37, 217
BcnI	CCSGG	3 cut(s)	85, 155, 160
BfaI	CTAG	1 cut(s)	191
Bme1390I	CCNGG	3 cut(s)	85, 155, 160
Bme18I	GGWCC	2 cut(s)	87, 151
BmgT120I	GGNCC	3 cut(s)	87, 151, 203
BmiI	GGNNCC	5 cut(s)	82, 88, 153, 205, 280
BmrFI	CCNGG	3 cut(s)	85, 155, 160
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	163, 405
BpuMI	CCSGG	3 cut(s)	85, 155, 160
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	328, 423
BseX3I	CGGCCG	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	299, 392
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	158, 204
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	4 cut(s)	84, 110, 155, 159
BsnI	GGCC	2 cut(s)	158, 204
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	58, 165, 291
Bsp143I	GATC	2 cut(s)	80, 270
BspANI	GGCC	2 cut(s)	158, 204
BspCNI	CTCAG	2 cut(s)	327, 422
BspFNI	CGCG	2 cut(s)	299, 392
BspLI	GGNNCC	5 cut(s)	82, 88, 153, 205, 280
BspPI	GGATC	2 cut(s)	75, 88
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	80, 270
Bst4CI	ACNGT	2 cut(s)	100, 142
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	314, 409
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	299, 392
BstHHI	GCGC	2 cut(s)	299, 392
BstKTI	GATC	2 cut(s)	83, 273
BstMBI	GATC	2 cut(s)	80, 270
BstMCI	CGRYCG	1 cut(s)	159
BstNSI	RCATGY	3 cut(s)	74, 326, 390
BstSCI	CCNGG	3 cut(s)	83, 153, 158
BstUI	CGCG	2 cut(s)	299, 392
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	158, 204
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
CfoI	GCGC	2 cut(s)	299, 392
Cfr13I	GGNCC	3 cut(s)	87, 151, 203
Csp6I	GTAC	2 cut(s)	96, 279
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	5 cut(s)	16, 51, 71, 323, 387
CviJI	RGCY	9 cut(s)	56, 77, 158, 163, 183, 204, 289, 344, 419
CviKI_1	RGCY	9 cut(s)	56, 77, 158, 163, 183, 204, 289, 344, 419
CviQI	GTAC	2 cut(s)	96, 279
DdeI	CTNAG	2 cut(s)	314, 409
DpnI	GATC	2 cut(s)	82, 272
DpnII	GATC	2 cut(s)	80, 270
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	156
Eco24I	GRGCYC	3 cut(s)	58, 165, 291
Eco47I	GGWCC	2 cut(s)	87, 151
Eco52I	CGGCCG	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	2 cut(s)	87, 151
EcoT38I	GRGCYC	3 cut(s)	58, 165, 291
FaeI	CATG	5 cut(s)	19, 54, 74, 326, 390
FaiI	YATR	7 cut(s)	17, 52, 64, 72, 132, 324, 388
FatI	CATG	5 cut(s)	15, 50, 70, 322, 386
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	3 cut(s)	58, 165, 291
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	298, 391
HaeIII	GGCC	2 cut(s)	158, 204
HapII	CCGG	4 cut(s)	84, 110, 155, 159
HhaI	GCGC	2 cut(s)	299, 392
Hin1II	CATG	5 cut(s)	19, 54, 74, 326, 390
Hin6I	GCGC	2 cut(s)	297, 390
HinP1I	GCGC	2 cut(s)	297, 390
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	2 cut(s)	266, 350
HpaII	CCGG	4 cut(s)	84, 110, 155, 159
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	5 cut(s)	60, 167, 275, 317, 349
Hpy188III	TCNNGA	2 cut(s)	149, 422
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	237, 248, 292
HpyCH4III	ACNGT	2 cut(s)	100, 142
HpyCH4V	TGCA	3 cut(s)	4, 66, 248
HpyF3I	CTNAG	2 cut(s)	314, 409
Hsp92II	CATG	5 cut(s)	19, 54, 74, 326, 390
HspAI	GCGC	2 cut(s)	297, 390
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	80, 270
LpnPI	CCDG	7 cut(s)	63, 97, 123, 134, 168, 172, 276
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	105, 220
MalI	GATC	2 cut(s)	82, 272
MboI	GATC	2 cut(s)	80, 270
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	3 cut(s)	58, 165, 291
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	46, 100, 269
MseI	TTAA	2 cut(s)	45, 258
MspI	CCGG	4 cut(s)	84, 110, 155, 159
MspR9I	CCNGG	3 cut(s)	85, 155, 160
MvnI	CGCG	2 cut(s)	299, 392
NciI	CCSGG	3 cut(s)	85, 155, 160
NdeII	GATC	2 cut(s)	80, 270
NlaIII	CATG	5 cut(s)	19, 54, 74, 326, 390
NlaIV	GGNNCC	5 cut(s)	82, 88, 153, 205, 280
NspI	RCATGY	3 cut(s)	74, 326, 390
NspV	TTCGAA	1 cut(s)	230
PciI	ACATGT	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	350
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	2 cut(s)	87, 151
PscI	ACATGT	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	2 cut(s)	87, 151
PspN4I	GGNNCC	5 cut(s)	82, 88, 153, 205, 280
PspPI	GGNCC	3 cut(s)	87, 151, 203
PspPPI	RGGWCCY	2 cut(s)	87, 151
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	97, 280
RsaNI	GTAC	2 cut(s)	96, 279
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	45, 258
Sau3AI	GATC	2 cut(s)	80, 270
Sau96I	GGNCC	3 cut(s)	87, 151, 203
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	85, 155, 160
SduI	GDGCHC	3 cut(s)	58, 165, 291
SetI	ASST	5 cut(s)	38, 192, 280, 284, 291
SfuI	TTCGAA	1 cut(s)	230
SinI	GGWCC	2 cut(s)	87, 151
SmlI	CTYRAG	2 cut(s)	178, 420
SmoI	CTYRAG	2 cut(s)	178, 420
Sse9I	AATT	1 cut(s)	232
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	83, 153, 158
TaaI	ACNGT	2 cut(s)	100, 142
TaqI	TCGA	3 cut(s)	230, 269, 285
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	45, 258
Tru9I	TTAA	2 cut(s)	45, 258
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	31, 230, 342, 353
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	87, 151
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	3 cut(s)	74, 326, 390
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.