Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4627208 .. 4628110

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1068100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCACCATGCAATCCTAGACGGCTCGACTTCAACCATGTTTGTAAAATTATGGGCTCACATATGCAAACACGAAAATTCCAATTTGTTACCTGACCAGCTCAAACCATTATACGACAGAAGCGTCGTCCAAGACACCGCCGGGCTCGAACCAATTTTCTTGAACCAATTGCTAAACATGGATTCAGACCGGCCCTTCAATAGAAGCTTGATGTTCGTCGACCATTTTAAATCTCCAGCAGAAGACACAATTCGAGGAACGTTTGTATTCACTCGGGAAAAAATAGAAGCACTAAGGCAATCAGTGAAGGAGAAGAGACAACAACATGGTCATCAATCGGTTCAATATTTGTCTACGTTTTGTGTCATACGTGCGTATGTATGGATTTGCTTAATCAAGGCAAAAGAAATACAAAGTGATCATAAAGCTGCAGTTCTGATGGGCTTTACTGTGGAATGTAGGTCGCGTTTAGACCCTTCTATACCCACCACTTATTTCGGCAACTGCTTATCATGCAGCGGAGCAGTTGCGGAAACAAAAGCGGTTTTAGGAGAAGATGGTCTGATTGTGGCAATAAATGCAATTAGTGAAGCTATAAAACGTTTGGACACGGACGGAGTTTTGGGTGGATTAGAGAATTTGCTTCCTTTAATGTACTCAACGAGTATAGATCATGAGAGTTTACTCTCTATTGCTGGATCGCCTCGCTTTGAAATTTATGGGACTGACTTTGGTTGGGGAAGACCAAAGAAGGTGGAGGTCATTTCCATAGAAAAGACTGGAGCAATATCTCTCTCAGAATCCAAGTATGGTGGTGGAGGCGTTGAGGTTGGGTTGGTTTTGAAAAAACATCACATGGAAGCGTTTTCGAGTCTGCTTGCGAAAGGTCTTGCAAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

301

Amino Acids

33.17

Weight (kDa)

6.6

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 290	3.4e-32	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	219, 353
AccII	CGCG	1 cut(s)	466
AciI	CCGC	4 cut(s)	138, 519, 530, 542
AclI	AACGTT	2 cut(s)	260, 601
AclWI	GGATC	1 cut(s)	706
AcsI	RAATTY	3 cut(s)	76, 637, 714
AfaI	GTAC	1 cut(s)	656
AgsI	TTSAA	6 cut(s)	33, 163, 199, 344, 713, 844
AluBI	AGCT	4 cut(s)	100, 207, 428, 593
AluI	AGCT	4 cut(s)	100, 207, 428, 593
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	706
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	428, 516
ApoI	RAATTY	3 cut(s)	76, 637, 714
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	273
BanII	GRGCYC	2 cut(s)	58, 147
BbsI	GAAGAC	2 cut(s)	249, 748
BbvI	GCAGC	2 cut(s)	415, 528
BccI	CCATC	2 cut(s)	433, 551
BceAI	ACGGC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	429, 517
BlsI	GCNGC	2 cut(s)	430, 518
Bme1390I	CCNGG	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	2 cut(s)	249, 748
BpmI	CTGGAG	2 cut(s)	219, 801
BpuMI	CCSGG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	1 cut(s)	784
BseXI	GCAGC	2 cut(s)	415, 528
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	141, 190
BslFI	GGGAC	1 cut(s)	736
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	58, 147
Bsp143I	GATC	3 cut(s)	418, 670, 698
BspACI	CCGC	4 cut(s)	138, 519, 530, 542
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	1 cut(s)	189
BssMI	GATC	3 cut(s)	418, 670, 698
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	2 cut(s)	293, 796
BstFNI	CGCG	1 cut(s)	466
BstKTI	GATC	3 cut(s)	421, 673, 701
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	3 cut(s)	418, 670, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 578
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	415, 528
BstV2I	GAAGAC	2 cut(s)	249, 748
BsuRI	GGCC	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	879
CciI	TCATGA	1 cut(s)	673
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	655
CspCI	CAANNNNNGTGG	4 cut(s)	735, 770, 793, 828
CviAII	CATG	7 cut(s)	8, 37, 178, 326, 513, 674, 856
CviJI	RGCY	9 cut(s)	24, 56, 100, 145, 193, 207, 428, 444, 593
CviKI_1	RGCY	9 cut(s)	24, 56, 100, 145, 193, 207, 428, 444, 593
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	2 cut(s)	293, 796
DpnI	GATC	3 cut(s)	420, 672, 700
DpnII	GATC	3 cut(s)	418, 670, 698
DraI	TTTAAA	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	58, 147
Eco88I	CYCGRG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	58, 147
FaeI	CATG	7 cut(s)	11, 40, 181, 329, 516, 677, 859
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	7 cut(s)	7, 36, 177, 325, 512, 673, 855
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	2 cut(s)	219, 353
Fnu4HI	GCNGC	2 cut(s)	429, 517
FriOI	GRGCYC	2 cut(s)	58, 147
Fsp4HI	GCNGC	2 cut(s)	429, 517
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	2 cut(s)	429, 517
GsuI	CTGGAG	2 cut(s)	219, 801
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	2 cut(s)	141, 190
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	7 cut(s)	11, 40, 181, 329, 516, 677, 859
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	3 cut(s)	182, 800, 871
HpaII	CCGG	2 cut(s)	141, 190
Hpy166II	GTNNAC	3 cut(s)	220, 354, 683
Hpy188I	TCNGA	5 cut(s)	187, 438, 564, 799, 902
Hpy188III	TCNNGA	3 cut(s)	160, 275, 674
Hpy8I	GTNNAC	3 cut(s)	220, 354, 683
Hpy99I	CGWCG	2 cut(s)	128, 221
HpyAV	CCTTC	4 cut(s)	205, 301, 486, 745
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	4 cut(s)	260, 356, 370, 601
HpyCH4V	TGCA	7 cut(s)	4, 11, 66, 431, 516, 581, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 578
HpyF3I	CTNAG	2 cut(s)	293, 796
HpySE526I	ACGT	4 cut(s)	260, 356, 370, 601
Hsp92II	CATG	7 cut(s)	11, 40, 181, 329, 516, 677, 859
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	418, 670, 698
LmnI	GCTCC	2 cut(s)	521, 782
LpnPI	CCDG	7 cut(s)	105, 110, 154, 203, 249, 681, 765
Lsp1109I	GCAGC	2 cut(s)	415, 528
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	4 cut(s)	260, 356, 370, 601
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	3 cut(s)	420, 672, 700
MboI	GATC	3 cut(s)	418, 670, 698
MboII	GAAGA	4 cut(s)	254, 325, 566, 753
MfeI	CAATTG	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	58, 147
MluCI	AATT	9 cut(s)	47, 76, 82, 153, 167, 249, 582, 637, 714
MlyI	GAGTC	1 cut(s)	880
MnlI	CCTC	5 cut(s)	248, 714, 751, 812, 820
MseI	TTAA	3 cut(s)	228, 392, 650
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	2 cut(s)	141, 190
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	513, 578
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	3 cut(s)	418, 670, 698
NlaIII	CATG	7 cut(s)	11, 40, 181, 329, 516, 677, 859
PagI	TCATGA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	182, 800
PkrI	GCNGC	2 cut(s)	430, 518
PleI	GAGTC	1 cut(s)	879
PpsI	GAGTC	1 cut(s)	879
Ppu21I	YACGTR	1 cut(s)	371
Psp1406I	AACGTT	2 cut(s)	260, 601
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	228, 392, 650
SatI	GCNGC	2 cut(s)	429, 517
Sau3AI	GATC	3 cut(s)	418, 670, 698
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	58, 147
SfcI	CTRYAG	1 cut(s)	429
Sse9I	AATT	9 cut(s)	47, 76, 82, 153, 167, 249, 582, 637, 714
SsiI	CCGC	4 cut(s)	138, 519, 530, 542
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	4 cut(s)	263, 359, 373, 604
TaqI	TCGA	5 cut(s)	26, 147, 219, 253, 869
TasI	AATT	9 cut(s)	47, 76, 82, 153, 167, 249, 582, 637, 714
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	2 cut(s)	182, 800
Tru1I	TTAA	3 cut(s)	228, 392, 650
Tru9I	TTAA	3 cut(s)	228, 392, 650
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	428, 516
TspGWI	ACGGA	2 cut(s)	626, 630
TspRI	CASTG	1 cut(s)	309
XapI	RAATTY	3 cut(s)	76, 637, 714
XmiI	GTMKAC	2 cut(s)	219, 353
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.