Prupe.3G254000_v2.0.a1

phenolic glucoside malonyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000138
Physical Location & Seq
Forward (+)
24322105 .. 24323688
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G254000.1

Sequence Viewer

Length: 786 bp
ATGGCAGAGCTAAGCTCAACCTCAGTAAAACTAGTTGAGGTCTGCAGTGTAGCTCCACAACCACAACCAGATGTTGCAGAGTTTTATCTTCCCCTAACCTTCTTCGACCTCCTATGGCTAAGGTTTCCACACTTCCACCGCCTTTCCTTCTACGAAATTTTGGCTTCCTCTGCCTCAGCTGACACAAAACCCTTCTTTGATTCTCTACTCTTTCAAAAACTCAAAGCCTCACTCTCTGTCACCCTCCAACACTTTCTACCTCTGGCAGGAAACATCACTTGGCCCCAGGACTCCCACAAACCCGTTCTCAGTTATGTCCAAGGCGGCGCCGTTTCGCTCACCACAGCCCATTCTGATGCTGATTTCCACCGTCTTTCAAGCAACGACTTCAACATTGAAGCCAAAGAATACCATCCTCTTGTACCCCAATTGGCAATATCTCGTGAAAAAGCTGCTGTGATGGCTTTTCAAATCACTCTCTTTCCCAACAGCAGCGGCTTCTCCATTGGAATTTCCATGCACCATGCAGCTCTTGATGGCAAAACTTTGTTCATGTTTCAAAAATCATGGGCCCACTTATGCAAACATGAACCTGATACTTTGTTGTCTGATCAGCTGAAACCATTTTATGACAGAAGGGTCTTCATCCAGGACCCAGCTGGGCTCGAGCTCGAAGCAATCTACTTGAACCAGTTTCTGAATATGGACCAACGACCCAACAACCAAAGCTTGTTGGTTGCCACCCGCTATAAATCTCTAACTAGATTCGATTTGAGGCACGTTTGA

Protein Analysis

262

Amino Acids

29.62

Weight (kDa)

6.44

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 4 cut(s) 139, 324, 495, 745
AcsI RAATTY 2 cut(s) 156, 510
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 7 cut(s) 215, 378, 391, 398, 470, 560, 688
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 2 cut(s) 285, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
Alw21I GWGCWC 1 cut(s) 672
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 2 cut(s) 281, 570
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 3 cut(s) 452, 492, 527
ApoI RAATTY 2 cut(s) 156, 510
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 5 cut(s) 282, 570, 571, 652, 706
AsuHPI GGTGA 2 cut(s) 232, 331
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 2 cut(s) 652, 706
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 3 cut(s) 574, 666, 672
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 439, 504, 539
BccI CCATC 3 cut(s) 420, 454, 530
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 287, 650
BclI TGATCA 1 cut(s) 610
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 2 cut(s) 32, 762
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 330
BisI GCNGC 5 cut(s) 325, 453, 493, 496, 528
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 5 cut(s) 326, 454, 494, 497, 529
Bme1390I CCNGG 2 cut(s) 287, 650
Bme18I GGWCC 2 cut(s) 652, 706
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 5 cut(s) 282, 570, 571, 652, 706
BmiI GGNNCC 4 cut(s) 284, 328, 572, 654
BmrFI CCNGG 2 cut(s) 287, 650
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 634
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 2 cut(s) 119, 175
Bpu1102I GCTNAGC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 285, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 691
BseBI CCWGG 2 cut(s) 287, 650
BseDI CCNNGG 2 cut(s) 285, 319
BseGI GGATG 2 cut(s) 412, 645
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 3 cut(s) 36, 189, 322
BseNI ACTGG 1 cut(s) 691
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 3 cut(s) 439, 504, 539
BseYI CCCAGC 2 cut(s) 655, 659
BshFI GGCC 2 cut(s) 283, 572
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 266
BsnI GGCC 2 cut(s) 283, 572
BsoBI CYCGRG 1 cut(s) 665
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 574, 666, 672
Bsp143I GATC 1 cut(s) 610
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 4 cut(s) 139, 324, 495, 745
BspANI GGCC 2 cut(s) 283, 572
BspCNI CTCAG 3 cut(s) 35, 188, 321
BspLI GGNNCC 4 cut(s) 284, 328, 572, 654
BspMAI CTGCAG 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 285, 319
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 287, 650
Bst4CI ACNGT 1 cut(s) 371
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 5 cut(s) 11, 22, 119, 175, 308
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 412, 645
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 1 cut(s) 613
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 170, 461
BstNI CCWGG 2 cut(s) 287, 650
BstSCI CCNGG 2 cut(s) 285, 648
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 3 cut(s) 439, 504, 539
BstV2I GAAGAC 1 cut(s) 634
BsuRI GGCC 2 cut(s) 283, 572
BtsCI GGATG 2 cut(s) 412, 645
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 5 cut(s) 282, 570, 571, 652, 706
Csp6I GTAC 1 cut(s) 422
CviAII CATG 5 cut(s) 517, 524, 553, 567, 587
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 5 cut(s) 11, 22, 119, 175, 308
DinI GGCGCC 1 cut(s) 328
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 3 cut(s) 574, 666, 672
Eco47I GGWCC 2 cut(s) 652, 706
Eco53kI GAGCTC 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 285, 648
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 3 cut(s) 574, 666, 672
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 5 cut(s) 520, 527, 556, 570, 590
FatI CATG 5 cut(s) 516, 523, 552, 566, 586
FauI CCCGC 1 cut(s) 752
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 5 cut(s) 325, 453, 493, 496, 528
FokI GGATG 2 cut(s) 399, 632
FriOI GRGCYC 3 cut(s) 574, 666, 672
Fsp4HI GCNGC 5 cut(s) 325, 453, 493, 496, 528
FspBI CTAG 2 cut(s) 32, 762
GlaI GCGC 1 cut(s) 328
GluI GCNGC 5 cut(s) 325, 453, 493, 496, 528
GsaI CCCAGC 2 cut(s) 659, 663
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 2 cut(s) 283, 572
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 5 cut(s) 520, 527, 556, 570, 590
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 3 cut(s) 200, 290, 765
HphI GGTGA 2 cut(s) 232, 331
Hpy188I TCNGA 3 cut(s) 355, 610, 699
Hpy188III TCNNGA 2 cut(s) 443, 533
HpyAV CCTTC 4 cut(s) 109, 157, 202, 630
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 5 cut(s) 45, 77, 520, 527, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 461
HpyF3I CTNAG 5 cut(s) 11, 22, 119, 175, 308
HpySE526I ACGT 1 cut(s) 780
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 5 cut(s) 520, 527, 556, 570, 590
HspAI GCGC 1 cut(s) 327
KasI GGCGCC 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 3 cut(s) 439, 504, 539
LweI GCATC 1 cut(s) 346
MaeI CTAG 2 cut(s) 32, 762
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 3 cut(s) 80, 94, 634
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 3 cut(s) 574, 666, 672
MluCI AATT 3 cut(s) 156, 428, 510
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 4 cut(s) 179, 495, 616, 659
MspR9I CCNGG 2 cut(s) 287, 650
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 2 cut(s) 287, 650
MwoI GCNNNNNNNGC 2 cut(s) 170, 461
NarI GGCGCC 1 cut(s) 327
NdeII GATC 1 cut(s) 610
NlaIII CATG 5 cut(s) 520, 527, 556, 570, 590
NlaIV GGNNCC 4 cut(s) 284, 328, 572, 654
NmuCI GTSAC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 665
PfeI GAWTC 2 cut(s) 200, 765
PfoI TCCNGGA 1 cut(s) 648
PkrI GCNGC 5 cut(s) 326, 454, 494, 497, 529
PleI GAGTC 1 cut(s) 284
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 285, 648
PspFI CCCAGC 2 cut(s) 655, 659
PspGI CCWGG 2 cut(s) 285, 648
PspN4I GGNNCC 4 cut(s) 284, 328, 572, 654
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 5 cut(s) 282, 570, 571, 652, 706
PspPPI RGGWCCY 1 cut(s) 652
PspXI VCTCGAGB 1 cut(s) 665
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 697
PvuII CAGCTG 3 cut(s) 179, 616, 659
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 672
SatI GCNGC 5 cut(s) 325, 453, 493, 496, 528
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 5 cut(s) 282, 570, 571, 652, 706
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 287, 650
SduI GDGCHC 3 cut(s) 574, 666, 672
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 665
SinI GGWCC 2 cut(s) 652, 706
SlaI CTCGAG 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 3 cut(s) 156, 428, 510
SsiI CCGC 4 cut(s) 139, 324, 495, 745
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 2 cut(s) 32, 762
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 2 cut(s) 285, 648
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 1 cut(s) 783
TaqI TCGA 4 cut(s) 105, 666, 672, 768
TasI AATT 3 cut(s) 156, 428, 510
TauI GCSGC 2 cut(s) 327, 498
TfiI GAWTC 2 cut(s) 200, 765
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 3 cut(s) 452, 492, 527
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 541, 603, 634
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 652, 706
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 2 cut(s) 156, 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XhoI CTCGAG 1 cut(s) 665
XspI CTAG 2 cut(s) 32, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.