Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004205.1

Orthogroup ID

OG0000138

Physical Location & Seq

Genomic Coordinates Reverse (-)

17357 .. 18127

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004205.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgcaccatgcagtccttgatggcaattcttcaaccttgtttttcaagttgtgggctcacatacgcatgcatcatgaacaactcacaaactcttcgtctttgttagcggatgacctaaaaccgtgttgcactgacagattgatcatccaggatccgttagggcttaaagaaatctactcgaaccaatggctcgacatgggcaagcctaataaccgaagcttaaaggtttgggaaattaaatctccatcttgcttgattagagctacctttgaattcacaaaacaaaatatacaaacaattaggcagcatgtgaaaactgtactgaattctgattcacttcatttgtctgcatttgctctaacatgcgcctatacttgggtttgcttagtcaaggtagaagaaatcaaatgtgagaaagtatttatattcctcaacgtagaccacaagtctcgcttagatccttctatatctgctaattactttggaaattgcatcgtgggatgtgaagaagttgcacaaacaaaagggctactaggagaagattggttggtcatggctataaaggcaattagtaaggctattatgggtttgaaaaatgaggggttacttttcgatggggcagagagctgggtttcaagaatgtgtactgtgctaggtagtgatcatagggttttttccaccgctggctcgccttggtttaggctttatgagactgattttggatggggaagaccaaagaggactaaggtggtgactatagataagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko00943 ko00944 map00330 map00943 map00944

Pfam Domains

Protein Families

Transferase

Protein Analysis

256

Amino Acids

29.06

Weight (kDa)

8.33

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29590 AT3G29635 AT3G29636 AT3G29670 AT3G29680 AT3G29690 AT3G29720 AT5G39050 AT5G39080 AT5G39090 AT5G61160
fragaria_vesca	FvH4_6g46740 FvH4_6g46741 FvH4_6g46742 FvH4_6g46743 FvH4_6g46743 FvH4_6g46750 FvH4_6g46770 FvH4_6g46780 FvH4_6g48750 FvH4_6g48770 FvH4_7g01310 FvH4_7g01410
malus_domestica	MD09G1060700.v1.1 MD09G1067500.v1.1 MD09G1067900.v1.1 MD09G1068000.v1.1 MD09G1068100.v1.1 MD09G1080400.v1.1 MD09G1080500.v1.1 MD17G1056000.v1.1 MD17G1056100.v1.1 MD17G1060500.v1.1 MD17G1060600.v1.1 MD17G1060700.v1.1 MD17G1060800.v1.1 MD17G1061000.v1.1 MD17G1070900.v1.1 MD17G1071300.v1.1 MD17G1071400.v1.1
prunus_persica	Prupe.3G252700_v2.0.a1 Prupe.3G252800_v2.0.a1 Prupe.3G252900_v2.0.a1 Prupe.3G253000_v2.0.a1 Prupe.3G253100_v2.0.a1 Prupe.3G253200_v2.0.a1 Prupe.3G253300_v2.0.a1 Prupe.3G253400_v2.0.a1 Prupe.3G253500_v2.0.a1 Prupe.3G253600_v2.0.a1 Prupe.3G253700_v2.0.a1 Prupe.3G253800_v2.0.a1 Prupe.3G253900_v2.0.a1 Prupe.3G254000_v2.0.a1 Prupe.3G254200_v2.0.a1 Prupe.3G254300_v2.0.a1 Prupe.3G254400_v2.0.a1
pyrus_communis	pycom09g00710 pycom111g05670 pycom111g05680 pycom111g05700 pycom111g05710 pycom111g05720 pycom12433g00160 pycom17g05440 pycom17g05520 pycom17g06020 pycom17g06030 pycom17g06040 pycom17g06050 pycom17g06060 pycom17g07080
rosa_chinensis	RchiOBHm_Chr1g0317141 RchiOBHm_Chr1g0317151 RchiOBHm_Chr1g0317191 RchiOBHm_Chr1g0317201 RchiOBHm_Chr1g0317211 RchiOBHm_Chr1g0334681 RchiOBHm_Chr1g0334691 RchiOBHm_Chr2g0165681 RchiOBHm_Chr2g0165721 RchiOBHm_Chr2g0165731 RchiOBHm_Chr2g0165741 RchiOBHm_Chr2g0165751 RchiOBHm_Chr2g0165771 RchiOBHm_Chr2g0165781 RchiOBHm_Chr5g0029321 RchiOBHm_Chr5g0029331
rosa_laevigata	RLG00000021545 RLG00000021546 RLG00000021548 RLG00000021549 RLG00000021550 RLG00000021551 RLG00000021552 RLG00000029433 RLG00000029434 RLG00000029435 RLG00000029439 RLG00000029441 RLG00000029442 RLG00000030618 RLG00000030619 RLG00000030620 RLG00000030622 RLG00000033153 RLG00000033154 RLG00000033155 RLG00000033156
rosa_multiflora	Rmu_co7981466.1_g000001 Rmu_co8034280.1_g000001 Rmu_co8243107.1_g000001 Rmu_co8406929.1_g000001 Rmu_sc0000802.1_g000001 Rmu_sc0002295.1_g000005 Rmu_sc0003227.1_g000026 Rmu_sc0003227.1_g000028 Rmu_sc0003227.1_g000029 Rmu_sc0003227.1_g000030 Rmu_sc0003227.1_g000031 Rmu_sc0003689.1_g000001 Rmu_sc0003689.1_g000007 Rmu_sc0004137.1_g000001 Rmu_sc0004205.1_g000004 Rmu_sc0006595.1_g000001 Rmu_sc0006595.1_g000002 Rmu_sc0006595.1_g000003 Rmu_sc0006595.1_g000005 Rmu_sc0009268.1_g000003 Rmu_sc0009268.1_g000004 Rmu_sc0009268.1_g000005 Rmu_sc0009268.1_g000012 Rmu_sc0010198.1_g000001 Rmu_sc0010198.1_g000003 Rmu_sc0010463.1_g000008 Rmu_sc0011453.1_g000001 Rmu_sc0013848.1_g000001 Rmu_sc0013964.1_g000002 Rmu_sc0020734.1_g000001 Rmu_sc0021275.1_g000001 Rmu_sc0024807.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039060 Rroxscaffold_2G00085550 Rroxscaffold_2G00085570 Rroxscaffold_2G00085590 Rroxscaffold_2G00085600 Rroxscaffold_2G00085630 Rroxscaffold_2G00085660 Rroxscaffold_2G00085670 Rroxscaffold_4G00316670 Rroxscaffold_4G00316720 Rroxscaffold_4G00316730 Rroxscaffold_4G00330570 Rroxscaffold_4G00330590 Rroxscaffold_4G00330600 Rroxscaffold_4G00330620
rosa_rugosa	Rorug01G0014900 Rorug01G0015000 Rorug01G0015200 Rorug01G0114800 Rorug01G0114800 Rorug02G0516600 Rorug02G0516700 Rorug02G0516800 Rorug02G0516900 Rorug02G0517000 Rorug02G0517100 Rorug02G0517200 Rorug02G0517300 Rorug05G0113300
rosa_samantha	Rh1BG022500 Rh1BG022600 Rh1BG106200 Rh1BG106400 Rh1BG106500 Rh2AG557600 Rh2CG564900 Rh2CG565000 Rh2CG565100 Rh2CG565200 Rh2CG565400 Rh2CG565500 Rh2CG565600 Rh2CG565700 Rh5CG225500 Rh5CG225600
rosa_wichuraiana	Rw0G011340 Rw0G011350 Rw0G011360 Rw0G016000 Rw0G016010 Rw0G016020 Rw0G016030 Rw1G001820 Rw1G001830 Rw1G011540 Rw1G011550 Rw2G048610 Rw2G048620 Rw2G048630 Rw5G018670 Rw5G018680 Rw5G018690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	2 cut(s)	107, 681
AclWI	GGATC	3 cut(s)	146, 159, 452
AcsI	RAATTY	2 cut(s)	272, 325
AfaI	GTAC	2 cut(s)	321, 646
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	33, 46, 272, 592, 636
AhdI	GACNNNNNGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	219, 263, 627
AluI	AGCT	3 cut(s)	219, 263, 627
Alw26I	GTCTC	2 cut(s)	453, 704
AlwI	GGATC	3 cut(s)	146, 159, 452
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	2 cut(s)	272, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	736
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	4 cut(s)	14, 253, 608, 717
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	2 cut(s)	141, 661
BcoDI	GTCTC	2 cut(s)	453, 704
BfaI	CTAG	2 cut(s)	533, 653
BfmI	CTRYAG	1 cut(s)	756
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	79, 501
BpiI	GAAGAC	1 cut(s)	736
BsaJI	CCNNGG	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	4 cut(s)	115, 144, 506, 728
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	453, 704
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	141, 151, 457, 661
BspACI	CCGC	2 cut(s)	107, 681
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	3 cut(s)	146, 159, 452
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	4 cut(s)	141, 151, 457, 661
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	123, 319, 649
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	68, 203, 685, 689
BstDEI	CTNAG	3 cut(s)	385, 454, 744
BstF5I	GGATG	4 cut(s)	115, 144, 506, 728
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	4 cut(s)	144, 154, 460, 664
BstMAI	GTCTC	2 cut(s)	453, 704
BstMBI	GATC	4 cut(s)	141, 151, 457, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	3 cut(s)	70, 311, 366
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	736
BstX2I	RGATCY	2 cut(s)	151, 457
BstYI	RGATCY	2 cut(s)	151, 457
BtsCI	GGATG	4 cut(s)	115, 144, 506, 728
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	68, 203, 685, 689
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	320, 645
CviAII	CATG	8 cut(s)	8, 67, 74, 196, 308, 363, 553, 768
CviQI	GTAC	2 cut(s)	320, 645
DdeI	CTNAG	3 cut(s)	385, 454, 744
DpnI	GATC	4 cut(s)	143, 153, 459, 663
DpnII	GATC	4 cut(s)	141, 151, 457, 661
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	58
EcoRI	GAATTC	2 cut(s)	272, 325
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	8 cut(s)	11, 70, 77, 199, 311, 366, 556, 771
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	8 cut(s)	7, 66, 73, 195, 307, 362, 552, 767
FbaI	TGATCA	2 cut(s)	141, 661
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	4 cut(s)	122, 131, 513, 735
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	533, 653
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	1 cut(s)	305
GsaI	CCCAGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	8 cut(s)	11, 70, 77, 199, 311, 366, 556, 771
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	2 cut(s)	439, 645
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	74, 636
Hpy8I	GTNNAC	2 cut(s)	439, 645
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	3 cut(s)	123, 319, 649
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	4, 11, 70, 129, 350, 492, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	3 cut(s)	385, 454, 744
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	8 cut(s)	11, 70, 77, 199, 311, 366, 556, 771
HspAI	GCGC	1 cut(s)	366
Ksp22I	TGATCA	2 cut(s)	141, 661
Kzo9I	GATC	4 cut(s)	141, 151, 457, 661
LpnPI	CCDG	4 cut(s)	134, 161, 613, 669
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	79, 501
MaeI	CTAG	2 cut(s)	533, 653
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	603, 751
MalI	GATC	4 cut(s)	143, 153, 459, 663
MboI	GATC	4 cut(s)	141, 151, 457, 661
MboII	GAAGA	6 cut(s)	21, 84, 410, 518, 551, 741
MflI	RGATCY	2 cut(s)	151, 457
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	8 cut(s)	25, 234, 272, 297, 325, 475, 487, 567
MnlI	CCTC	3 cut(s)	440, 592, 732
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	3 cut(s)	165, 221, 237
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	4 cut(s)	141, 151, 457, 661
NlaIII	CATG	8 cut(s)	11, 70, 77, 199, 311, 366, 556, 771
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	3 cut(s)	70, 311, 366
PaeI	GCATGC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	151, 457
RsaI	GTAC	2 cut(s)	321, 646
RsaNI	GTAC	2 cut(s)	320, 645
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	165, 221, 237
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	4 cut(s)	141, 151, 457, 661
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	2 cut(s)	79, 501
SfcI	CTRYAG	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	8 cut(s)	25, 234, 272, 297, 325, 475, 487, 567
SsiI	CCGC	2 cut(s)	107, 681
SspMI	CTAG	2 cut(s)	533, 653
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	3 cut(s)	123, 319, 649
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	179, 192, 612
TasI	AATT	8 cut(s)	25, 234, 272, 297, 325, 475, 487, 567
TatI	WGTACW	2 cut(s)	319, 644
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	165, 221, 237
Tru9I	TTAA	3 cut(s)	165, 221, 237
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	2 cut(s)	90, 329
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	272, 325
XceI	RCATGY	3 cut(s)	70, 311, 366
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	533, 653
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.