FvH4_2g36250

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000559
Physical Location & Seq
Forward (+)
26569168 .. 26571397
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36250.t1

Sequence Viewer

Length: 1224 bp
ATGGGGTTTCATCTCCCACACATCTTTGGTTTTTTCACTTTCACACTGGTTGTAAGCCATGCTGCTCTTTCGCCTCAACTTTATTGGAATTCTGTCTTGCCAAACACACCGATGCCCAAAACTCTGAGTGAACTTCTGCAATCTGACTTCAGCGAAGAAAAAAGCACCTCAGTTCTGGTAGGGAAGGGTGGTGTCAACGTTAATGCAGGTAAAGGAAAGCCTGGAGGAACCAATGTGAATGTTGGGAAGGGTGGTGTGAATGTGCACGCTCCAAACAAAAAGCCAGGTGGTGGTACTAATGTCAACGTTGGGAAGGGAGGCGTAAATGTGCAAACTGGGAAGGGAAAGCCAGGGAGCGGTACCAATGTCAACGTAGGGGGAAAAGGTGGTGTTGGAGTGCACACCGGAAAGCCCGGAAAGAGAACCAACGTTGGTGTTGGCAAAGGAGGAGTGCATGTAAGCACACACCACAAGGGAAAACCTGTATATGTTGGAGTAACACCAAGCAAAAACCCATTCCTGTACCAGTATGCTGCTACTGAGACTCAGCTTCATGAAGATCCACAGGTCGCTCTTTTCTTCTTGGAGAAGGACATGCATCCAGGCACAAAGATGAACTTGCACTTCACTACAAGTTCAGACACAGCAACTTTCCTCCCACGCAAAACTGCAGAATCGATCCCTTTCTCATCATCTAAACTGCCAGAAATTTTGGACCAGTTTTCAGTGAAACCAGAATCGGCGGAAGCAGACACACTTAAGCAAACCATTGAAGAGTGTGAGAAACCAGGTATTACAGGAGAGGAAAAATATTGTGCAACCTCTTTGGAGTCGATGGTTGACTTCAGCACTTCCAAGCTTGGAAGGAACATTCAGGCACTCTCAACAGAGGTTGCAAAGGGAACCACCATGCAGAAGTACACAATATTGCCAGGAGTGAAGAAGCTGGCAGGTGAAAATTCCATTGTGTGTCATAAGCAGAACTATGCATACGCTGTCTTCTACTGCCATGCAACAACAACCACAAGAGCTTATGTAGTGCCACTGGAAGGTGCTGATGGAGTGAACGCTAAAGCAGTAGCAGTCTGCCACACAGACACCACAGAATGGAACCCAAAGCATTTGGCCTTCCAAGTCCTTAAAGTTAAACCAGGAACCATTCCCATCTGCCATTTTCTTCCTAGTGATCATATTGTCTGGGTACCCAACCAGAAATCCACATAA

Protein Analysis

408

Amino Acids

43.38

Weight (kDa)

9.19

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 192 - 402 6e-90 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 941
Acc36I ACCTGC 2 cut(s) 197, 941
Acc65I GGTACC 2 cut(s) 359, 1201
AccB1I GGYRCC 2 cut(s) 359, 1201
AccB7I CCANNNNNTGG 2 cut(s) 290, 1107
AccBSI CCGCTC 1 cut(s) 357
AciI CCGC 2 cut(s) 357, 743
AclI AACGTT 3 cut(s) 198, 306, 429
AclWI GGATC 2 cut(s) 554, 673
AcsI RAATTY 3 cut(s) 88, 708, 958
AcuI CTGAAG 2 cut(s) 133, 829
AfaI GTAC 5 cut(s) 295, 361, 524, 920, 1203
AfiI CCNNNNNNNGG 4 cut(s) 290, 356, 1049, 1107
AflII CTTAAG 1 cut(s) 758
AgsI TTSAA 1 cut(s) 773
AjnI CCWGG 7 cut(s) 220, 283, 349, 601, 787, 931, 1150
AluBI AGCT 4 cut(s) 550, 859, 946, 1031
AluI AGCT 4 cut(s) 550, 859, 946, 1031
Alw21I GWGCWC 2 cut(s) 267, 402
Alw26I GTCTC 1 cut(s) 536
Alw44I GTGCAC 2 cut(s) 263, 398
AlwI GGATC 2 cut(s) 554, 673
AoxI GGCC 1 cut(s) 1125
ApaLI GTGCAC 2 cut(s) 263, 398
ApeKI GCWGC 2 cut(s) 62, 533
ApoI RAATTY 3 cut(s) 88, 708, 958
Asp718I GGTACC 2 cut(s) 359, 1201
AspS9I GGNCC 1 cut(s) 715
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 965
AvaII GGWCC 1 cut(s) 715
BaeGI GKGCMC 2 cut(s) 267, 402
BaeI ACNNNNGTAYC 4 cut(s) 285, 318, 351, 384
BanI GGYRCC 2 cut(s) 359, 1201
BbsI GAAGAC 1 cut(s) 991
Bbv12I GWGCWC 2 cut(s) 267, 402
BbvI GCAGC 2 cut(s) 49, 520
BccI CCATC 3 cut(s) 829, 1052, 1172
BciT130I CCWGG 7 cut(s) 222, 285, 351, 603, 789, 933, 1152
BclI TGATCA 1 cut(s) 1186
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 1182
BfmI CTRYAG 1 cut(s) 669
BfrI CTTAAG 1 cut(s) 758
BfuAI ACCTGC 2 cut(s) 197, 941
BisI GCNGC 2 cut(s) 63, 534
BlsI GCNGC 2 cut(s) 64, 535
Bme1390I CCNGG 8 cut(s) 222, 285, 351, 414, 603, 789, 933, 1152
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 6 cut(s) 229, 361, 904, 1112, 1156, 1203
BmrFI CCNGG 8 cut(s) 222, 285, 351, 414, 603, 789, 933, 1152
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 102, 607
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 991
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 677
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 356, 1049, 1107
Bse1I ACTGG 5 cut(s) 51, 340, 526, 718, 1050
BseBI CCWGG 7 cut(s) 222, 285, 351, 603, 789, 933, 1152
BseCI ATCGAT 1 cut(s) 677
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 290, 356, 1049, 1107
BseMII CTCAG 4 cut(s) 116, 183, 531, 560
BseNI ACTGG 5 cut(s) 51, 340, 526, 718, 1050
BseRI GAGGAG 1 cut(s) 462
BseSI GKGCMC 2 cut(s) 267, 402
BseXI GCAGC 2 cut(s) 49, 520
BshFI GGCC 1 cut(s) 1127
BshNI GGYRCC 2 cut(s) 359, 1201
BshVI ATCGAT 1 cut(s) 677
BsiHKAI GWGCWC 2 cut(s) 267, 402
BsiSI CCGG 2 cut(s) 405, 414
BslI CCNNNNNNNGG 4 cut(s) 290, 356, 1049, 1107
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 1127
Bsp1286I GDGCHC 2 cut(s) 267, 402
Bsp143I GATC 3 cut(s) 559, 678, 1186
BspACI CCGC 2 cut(s) 357, 743
BspANI GGCC 1 cut(s) 1127
BspCNI CTCAG 4 cut(s) 117, 182, 532, 559
BspDI ATCGAT 1 cut(s) 677
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 6 cut(s) 229, 361, 904, 1112, 1156, 1203
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 2 cut(s) 197, 941
BspPI GGATC 2 cut(s) 554, 673
BspT107I GGYRCC 2 cut(s) 359, 1201
BspTI CTTAAG 1 cut(s) 758
BsrBI CCGCTC 1 cut(s) 357
BsrI ACTGG 5 cut(s) 51, 340, 526, 718, 1050
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 559, 678, 1186
Bst2UI CCWGG 7 cut(s) 222, 285, 351, 603, 789, 933, 1152
Bst6I CTCTTC 1 cut(s) 768
BstAFI CTTAAG 1 cut(s) 758
BstC8I GCNNGC 2 cut(s) 267, 948
BstDEI CTNAG 4 cut(s) 125, 169, 540, 546
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 3 cut(s) 562, 681, 1189
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 559, 678, 1186
BstNI CCWGG 7 cut(s) 222, 285, 351, 603, 789, 933, 1152
BstNSI RCATGY 2 cut(s) 458, 598
BstSCI CCNGG 8 cut(s) 220, 283, 349, 412, 601, 787, 931, 1150
BstSFI CTRYAG 1 cut(s) 669
BstSLI GKGCMC 2 cut(s) 267, 402
BstV1I GCAGC 2 cut(s) 49, 520
BstV2I GAAGAC 1 cut(s) 991
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 1 cut(s) 677
BsuRI GGCC 1 cut(s) 1127
BsuTUI ATCGAT 1 cut(s) 677
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 44, 732, 1043
BveI ACCTGC 2 cut(s) 197, 941
Cac8I GCNNGC 2 cut(s) 267, 948
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 715
ClaI ATCGAT 1 cut(s) 677
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 5 cut(s) 294, 360, 523, 919, 1202
CviAII CATG 6 cut(s) 59, 455, 554, 595, 910, 1010
CviQI GTAC 5 cut(s) 294, 360, 523, 919, 1202
DdeI CTNAG 4 cut(s) 125, 169, 540, 546
DpnI GATC 3 cut(s) 561, 680, 1188
DpnII GATC 3 cut(s) 559, 678, 1186
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
EciI GGCGGA 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 715
Eco57I CTGAAG 2 cut(s) 133, 829
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 7 cut(s) 220, 283, 349, 601, 787, 931, 1150
EcoT22I ATGCAT 2 cut(s) 600, 991
FaeI CATG 6 cut(s) 62, 458, 557, 598, 913, 1013
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 6 cut(s) 58, 454, 553, 594, 909, 1009
FbaI TGATCA 1 cut(s) 1186
Fnu4HI GCNGC 2 cut(s) 63, 534
FokI GGATG 1 cut(s) 585
Fsp4HI GCNGC 2 cut(s) 63, 534
FspBI CTAG 1 cut(s) 1182
GluI GCNGC 2 cut(s) 63, 534
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 1127
HapII CCGG 2 cut(s) 405, 414
Hin1II CATG 6 cut(s) 62, 458, 557, 598, 913, 1013
HincII GTYRAC 4 cut(s) 196, 304, 370, 841
HindII GTYRAC 4 cut(s) 196, 304, 370, 841
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 4 cut(s) 544, 674, 737, 830
HpaII CCGG 2 cut(s) 405, 414
HphI GGTGA 1 cut(s) 965
Hpy166II GTNNAC 9 cut(s) 131, 196, 265, 304, 370, 400, 841, 921, 1066
Hpy188I TCNGA 3 cut(s) 126, 145, 640
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 9 cut(s) 131, 196, 265, 304, 370, 400, 841, 921, 1066
HpyAV CCTTC 8 cut(s) 178, 241, 307, 334, 583, 858, 1043, 1138
HpyCH4IV ACGT 4 cut(s) 198, 306, 372, 429
HpyF3I CTNAG 4 cut(s) 125, 169, 540, 546
HpySE526I ACGT 4 cut(s) 198, 306, 372, 429
Hsp92II CATG 6 cut(s) 62, 458, 557, 598, 913, 1013
KpnI GGTACC 2 cut(s) 363, 1205
Ksp22I TGATCA 1 cut(s) 1186
Kzo9I GATC 3 cut(s) 559, 678, 1186
LmnI GCTCC 2 cut(s) 274, 354
Lsp1109I GCAGC 2 cut(s) 49, 520
LweI GCATC 2 cut(s) 102, 607
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 1 cut(s) 1182
MaeII ACGT 4 cut(s) 198, 306, 372, 429
MaeIII GTNAC 1 cut(s) 496
MalI GATC 3 cut(s) 561, 680, 1188
MbiI CCGCTC 1 cut(s) 357
MboI GATC 3 cut(s) 559, 678, 1186
MboII GAAGA 7 cut(s) 167, 569, 571, 785, 952, 991, 1169
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 267, 402
MluCI AATT 3 cut(s) 88, 708, 958
MlyI GAGTC 2 cut(s) 538, 839
MmeI TCCRAC 2 cut(s) 373, 472
MnlI CCTC 9 cut(s) 84, 178, 218, 311, 440, 665, 796, 832, 883
Mph1103I ATGCAT 2 cut(s) 600, 991
MseI TTAA 4 cut(s) 201, 759, 1140, 1146
MslI CAYNNNNRTG 2 cut(s) 110, 611
MspCI CTTAAG 1 cut(s) 758
MspI CCGG 2 cut(s) 405, 414
MspR9I CCNGG 8 cut(s) 222, 285, 351, 414, 603, 789, 933, 1152
MvaI CCWGG 7 cut(s) 222, 285, 351, 603, 789, 933, 1152
NciI CCSGG 1 cut(s) 414
NdeII GATC 3 cut(s) 559, 678, 1186
NlaIII CATG 6 cut(s) 62, 458, 557, 598, 913, 1013
NlaIV GGNNCC 6 cut(s) 229, 361, 904, 1112, 1156, 1203
NsiI ATGCAT 2 cut(s) 600, 991
NspI RCATGY 2 cut(s) 458, 598
PagI TCATGA 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 941
PfeI GAWTC 2 cut(s) 674, 737
PflMI CCANNNNNTGG 2 cut(s) 290, 1107
PkrI GCNGC 2 cut(s) 64, 535
PleI GAGTC 2 cut(s) 538, 838
PpsI GAGTC 2 cut(s) 538, 838
Psp1406I AACGTT 3 cut(s) 198, 306, 429
Psp6I CCWGG 7 cut(s) 220, 283, 349, 601, 787, 931, 1150
PspGI CCWGG 7 cut(s) 220, 283, 349, 601, 787, 931, 1150
PspN4I GGNNCC 6 cut(s) 229, 361, 904, 1112, 1156, 1203
PspPI GGNCC 1 cut(s) 715
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 5 cut(s) 295, 361, 524, 920, 1203
RsaNI GTAC 5 cut(s) 294, 360, 523, 919, 1202
RseI CAYNNNNRTG 2 cut(s) 110, 611
SaqAI TTAA 4 cut(s) 201, 759, 1140, 1146
SatI GCNGC 2 cut(s) 63, 534
Sau3AI GATC 3 cut(s) 559, 678, 1186
Sau96I GGNCC 1 cut(s) 715
SchI GAGTC 2 cut(s) 538, 839
ScrFI CCNGG 8 cut(s) 222, 285, 351, 414, 603, 789, 933, 1152
SduI GDGCHC 2 cut(s) 267, 402
SexAI ACCWGGT 1 cut(s) 787
SfaNI GCATC 2 cut(s) 102, 607
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 2 cut(s) 110, 611
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 3 cut(s) 88, 708, 958
SsiI CCGC 2 cut(s) 357, 743
SspI AATATT 2 cut(s) 812, 927
SspMI CTAG 1 cut(s) 1182
StyD4I CCNGG 8 cut(s) 220, 283, 349, 412, 601, 787, 931, 1150
TaiI ACGT 4 cut(s) 201, 309, 375, 432
TaqI TCGA 2 cut(s) 677, 833
TasI AATT 3 cut(s) 88, 708, 958
TatI WGTACW 1 cut(s) 918
TfiI GAWTC 2 cut(s) 674, 737
Tru1I TTAA 4 cut(s) 201, 759, 1140, 1146
Tru9I TTAA 4 cut(s) 201, 759, 1140, 1146
TscAI CASTG 3 cut(s) 51, 732, 1050
TseI GCWGC 2 cut(s) 62, 533
TspDTI ATGAA 3 cut(s) 542, 570, 629
TspRI CASTG 3 cut(s) 51, 732, 1050
Van91I CCANNNNNTGG 2 cut(s) 290, 1107
Vha464I CTTAAG 1 cut(s) 758
VneI GTGCAC 2 cut(s) 263, 398
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 3 cut(s) 88, 708, 958
XceI RCATGY 2 cut(s) 458, 598
XspI CTAG 1 cut(s) 1182
Zsp2I ATGCAT 2 cut(s) 600, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.