RchiOBHm_Chr1g0356161

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000559
Physical Location & Seq
Reverse (-)
48698021 .. 48698854
834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58155

Sequence Viewer

Length: 834 bp
ATGGTTTTACGGTTTTACCAAAGACAAGTATGCTCATCAAAAGAATTGATATATTGGTCAGAAGGTGAAAGAAGTTACAGTGGGATTGGAAAGGATAGTGTAAGTGGCCGTGGCTGCGTCTGTTTTAGCTGTTATGGTGGGGGCTGTACAGAAGAAGTCAAAGTGAAGCCAGGTTTAACTACATACTTCCAAGAGAAAGATCTTCAGCATTTGGGAAAAACGGTGACGTTGCAATTCTTGAAACCCACAGATAACAACGCAACTCTTTTGCCTCGTAAAGTTGTAAAGTCCATACCCTTTTCAAGCAACAAGTTGCCAGAAATTCTAATATACTTTGGAGTGAAACCCATGTCGGCGGTTGCAGAAATAATGAAAAGCACAATCGAAGAGTGTGAGGCACCGGCAATTAAAGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATTGATTTCACGGTTTCAAAGCTTGGGAAGTACATCCAAGTTTATGCAACCGAGGCCGAAAACAATAACGAAAACAAACAAGAATATGGCATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGCTCGGTTGTGTGCCATAAGGAGAGCTATGTGTATGGTGTGTTTTACTGCCACAAATTCAATAACACAAGGGCTTACATGGTTCCATTGGTTGGTGCTGATGGAGTTGCGAAAGTTAAAGCATTAGTTGTTTGCCATACTGACACCACTAGCTGGAATCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCGCTGTCTGTCATTTTCTAGCCACTGCCGGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

277

Amino Acids

30.69

Weight (kDa)

8.2

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 62 - 276 6.5e-77 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 2 cut(s) 665, 726
AciI CCGC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 321, 629
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 3 cut(s) 148, 425, 482
AfiI CCNNNNNNNGG 2 cut(s) 665, 726
AgsI TTSAA 5 cut(s) 241, 303, 468, 634, 752
AjnI CCWGG 2 cut(s) 169, 769
AluBI AGCT 5 cut(s) 129, 472, 576, 600, 726
AluI AGCT 5 cut(s) 129, 472, 576, 600, 726
Alw26I GTCTC 1 cut(s) 564
AoxI GGCC 3 cut(s) 106, 504, 744
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 321, 629
AspLEI GCGC 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 77, 235
BanI GGYRCC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 668
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 171, 771
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 2 cut(s) 723, 800
BglII AGATCT 1 cut(s) 199
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 171, 771
BmiI GGNNCC 3 cut(s) 399, 657, 825
BmrFI CCNGG 2 cut(s) 171, 771
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 735
BsaJI CCNNGG 2 cut(s) 109, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 665, 726
Bse118I RCCGGY 2 cut(s) 400, 809
Bse1I ACTGG 1 cut(s) 556
BseBI CCWGG 2 cut(s) 171, 771
BseDI CCNNGG 2 cut(s) 109, 501
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 665, 726
BseNI ACTGG 1 cut(s) 556
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 3 cut(s) 108, 506, 746
BshNI GGYRCC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 401, 810
BslI CCNNNNNNNGG 2 cut(s) 665, 726
BsmAI GTCTC 1 cut(s) 564
BsnI GGCC 3 cut(s) 108, 506, 746
Bsp1407I TGTACA 1 cut(s) 146
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 356
BspANI GGCC 3 cut(s) 108, 506, 746
BspLI GGNNCC 3 cut(s) 399, 657, 825
BspT107I GGYRCC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 400, 809
BsrGI TGTACA 1 cut(s) 146
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 2 cut(s) 400, 809
BssECI CCNNGG 2 cut(s) 109, 501
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 171, 771
Bst4CI ACNGT 4 cut(s) 12, 80, 223, 463
Bst6I CTCTTC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 735
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 114, 503
BstNI CCWGG 2 cut(s) 171, 771
BstSCI CCNGG 2 cut(s) 169, 769
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 3 cut(s) 108, 506, 746
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 85, 804
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 2 cut(s) 400, 809
CseI GACGC 1 cut(s) 106
Csp6I GTAC 3 cut(s) 147, 424, 481
CviAII CATG 2 cut(s) 349, 652
CviQI GTAC 3 cut(s) 147, 424, 481
DdeI CTNAG 1 cut(s) 735
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 169, 769
FaeI CATG 2 cut(s) 352, 655
FatI CATG 2 cut(s) 348, 651
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 723, 800
FspI TGCGCA 1 cut(s) 430
GlaI GCGC 1 cut(s) 430
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 108, 506, 746
HapII CCGG 2 cut(s) 401, 810
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 431
Hin1II CATG 2 cut(s) 352, 655
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 443, 555, 730
HpaII CCGG 2 cut(s) 401, 810
HphI GGTGA 2 cut(s) 77, 235
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 4 cut(s) 12, 80, 223, 463
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 232, 362, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 503
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 352, 655
HspAI GCGC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 156, 183, 330, 414, 537, 712, 756, 783, 823
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 2 cut(s) 723, 800
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 74, 223
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 164, 194, 398, 428
MflI RGATCY 1 cut(s) 199
MluCI AATT 5 cut(s) 44, 233, 321, 405, 629
MlyI GAGTC 1 cut(s) 564
MnlI CCTC 4 cut(s) 282, 388, 496, 767
MseI TTAA 3 cut(s) 176, 408, 690
MspI CCGG 2 cut(s) 401, 810
MspR9I CCNGG 2 cut(s) 171, 771
MvaI CCWGG 2 cut(s) 171, 771
MwoI GCNNNNNNNGC 2 cut(s) 114, 503
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 352, 655
NlaIV GGNNCC 3 cut(s) 399, 657, 825
NmuCI GTSAC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 430
PfeI GAWTC 2 cut(s) 443, 730
PflMI CCANNNNNTGG 2 cut(s) 665, 726
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 169, 769
PspGI CCWGG 2 cut(s) 169, 769
PspN4I GGNNCC 3 cut(s) 399, 657, 825
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 148, 425, 482
RsaNI GTAC 3 cut(s) 147, 424, 481
SaqAI TTAA 3 cut(s) 176, 408, 690
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 2 cut(s) 171, 771
SetI ASST 8 cut(s) 67, 131, 175, 230, 474, 578, 602, 728
Sse9I AATT 5 cut(s) 44, 233, 321, 405, 629
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 723, 800
StyD4I CCNGG 2 cut(s) 169, 769
TaaI ACNGT 4 cut(s) 12, 80, 223, 463
TaiI ACGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 384
TasI AATT 5 cut(s) 44, 233, 321, 405, 629
TatI WGTACW 3 cut(s) 146, 423, 480
TfiI GAWTC 2 cut(s) 443, 730
Tru1I TTAA 3 cut(s) 176, 408, 690
Tru9I TTAA 3 cut(s) 176, 408, 690
TscAI CASTG 2 cut(s) 85, 811
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 2 cut(s) 85, 811
Van91I CCANNNNNTGG 2 cut(s) 665, 726
XapI RAATTY 2 cut(s) 321, 629
XspI CTAG 2 cut(s) 723, 800
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.