Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Reverse (-)

25865847 .. 25866614

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1199500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTCTTGCTAATTAAATCTGCAGACTTCCTTAGTGTTGGCAAAGGGGGAGTTATTCTTCACAGCCCAATTCAAAAGGAAGAGAATTGGGTTTATGCGAAATATTCAGGCAGTGGCGGCGGTGAGAGCACTCTGTTTCGTTTCCAGAATGATGCTGCAGAGAACGCTCGCGCTGAAGCCGAAACACAAGTTGAAGTCGACCGAAACAGAACAATTTTCTTCTTGGAGAATGACCTTCATCCTGGCAGGGTAATGAATTACCGCTTAGCTGGAAGTGGAAATTCTAGTACCACACCTTTCCTGTCCCGAAAAACTGCAGAGTCGATCCCCTTCAGTTCAAGCCAACCGCCAAAAATTCTGGATAAATTATCAGTGAAACCGGGGTCTGATGAAGCTGACTTGATTAAGGTAACCATTCAAAATTGTGAAAGTCAAGGCGCGAGTGACGAAGCAAAACAATGTGCCACCTCGTTAGTGTCAATGATCGACTATGCCACCTCCACGCTGGGATCAAGAAATGTTCTTGCAATCGCAACGGAGGTGGAACAAGGAGCTGCCCCCATGCAGAAGTGCACAATAACCGCAGATGGAGCGAAGAGGCTGGCAGCCAGCAACATCATGGTGTGTCATAAGATGAACTATTCGTATGCCGTCTTCTACTGCCATTCAATTGAAAAAACGACGACTTATGTGGTGCCTCTGCAAGGAGCTGACGGGTCGAAAGCCAAAGCAGTAGCAGCCTGCCATCAAGACACATCTCAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

256

Amino Acids

27.56

Weight (kDa)

6.22

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	72 - 255	1.3e-60	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	2 cut(s)	171, 440
AciI	CCGC	5 cut(s)	117, 120, 262, 347, 582
AclWI	GGATC	2 cut(s)	319, 517
AcsI	RAATTY	2 cut(s)	280, 354
AcuI	CTGAAG	2 cut(s)	195, 316
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	74, 194, 339, 419, 669, 674
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	4 cut(s)	269, 395, 554, 710
AluI	AGCT	4 cut(s)	269, 395, 554, 710
Alw21I	GWGCWC	2 cut(s)	131, 575
Alw44I	GTGCAC	1 cut(s)	571
AlwI	GGATC	2 cut(s)	319, 517
ApaLI	GTGCAC	1 cut(s)	571
ApeKI	GCWGC	4 cut(s)	155, 554, 605, 737
ApoI	RAATTY	2 cut(s)	280, 354
AspLEI	GCGC	2 cut(s)	173, 440
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	694
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	2 cut(s)	131, 575
BbvI	GCAGC	4 cut(s)	142, 541, 617, 749
BccI	CCATC	2 cut(s)	581, 753
BceAI	ACGGC	1 cut(s)	635
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	381
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	3 cut(s)	21, 156, 315
BisI	GCNGC	5 cut(s)	118, 156, 555, 606, 738
BlpI	GCTNAGC	1 cut(s)	265
BlsI	GCNGC	5 cut(s)	119, 157, 556, 607, 739
Bme1390I	CCNGG	2 cut(s)	243, 381
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	2 cut(s)	243, 381
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	646
Bpu1102I	GCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	142, 541, 617, 749
BseYI	CCCAGC	1 cut(s)	505
Bsh1236I	CGCG	2 cut(s)	171, 440
Bsh1285I	CGRYCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	694
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	131, 575
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	131, 575
Bsp143I	GATC	3 cut(s)	324, 483, 509
Bsp1720I	GCTNAGC	1 cut(s)	265
BspACI	CCGC	5 cut(s)	117, 120, 262, 347, 582
BspFNI	CGCG	2 cut(s)	171, 440
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	3 cut(s)	25, 160, 319
BspPI	GGATC	2 cut(s)	319, 517
BspT107I	GGYRCC	1 cut(s)	694
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	3 cut(s)	324, 483, 509
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	75, 590
BstC8I	GCNNGC	4 cut(s)	169, 603, 610, 742
BstDEI	CTNAG	2 cut(s)	32, 265
BstEII	GGTNACC	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	2 cut(s)	171, 440
BstHHI	GCGC	2 cut(s)	173, 440
BstKTI	GATC	3 cut(s)	327, 486, 512
BstMBI	GATC	3 cut(s)	324, 483, 509
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 164, 590, 737
BstNI	CCWGG	1 cut(s)	243
BstPI	GGTNACC	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	241, 379
BstSFI	CTRYAG	3 cut(s)	21, 156, 315
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	2 cut(s)	171, 440
BstV1I	GCAGC	4 cut(s)	142, 541, 617, 749
BstV2I	GAAGAC	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 378
Cac8I	GCNNGC	4 cut(s)	169, 603, 610, 742
CfoI	GCGC	2 cut(s)	173, 440
Csp6I	GTAC	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	2 cut(s)	562, 619
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	32, 265
DpnI	GATC	3 cut(s)	326, 485, 511
DpnII	GATC	3 cut(s)	324, 483, 509
Eam1104I	CTCTTC	2 cut(s)	75, 590
EarI	CTCTTC	2 cut(s)	75, 590
Eco57I	CTGAAG	2 cut(s)	195, 316
Eco91I	GGTNACC	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoO65I	GGTNACC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	565, 622
FaiI	YATR	7 cut(s)	96, 492, 563, 620, 630, 648, 690
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	2 cut(s)	561, 618
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	118, 156, 555, 606, 738
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	118, 156, 555, 606, 738
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	172, 439
GluI	GCNGC	5 cut(s)	118, 156, 555, 606, 738
GsaI	CCCAGC	1 cut(s)	509
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	173, 440
Hin1II	CATG	2 cut(s)	565, 622
Hin6I	GCGC	2 cut(s)	171, 438
HinP1I	GCGC	2 cut(s)	171, 438
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	199, 573
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	5 cut(s)	145, 306, 359, 513, 749
Hpy8I	GTNNAC	2 cut(s)	199, 573
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	245, 340
HpyCH4V	TGCA	7 cut(s)	23, 158, 317, 527, 565, 573, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 164, 590, 737
HpyF3I	CTNAG	2 cut(s)	32, 265
Hsp92II	CATG	2 cut(s)	565, 622
HspAI	GCGC	2 cut(s)	171, 438
Kzo9I	GATC	3 cut(s)	324, 483, 509
LmnI	GCTCC	3 cut(s)	551, 590, 707
Lsp1109I	GCAGC	4 cut(s)	142, 541, 617, 749
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	409, 443
MalI	GATC	3 cut(s)	326, 485, 511
MboI	GATC	3 cut(s)	324, 483, 509
MboII	GAAGA	5 cut(s)	50, 92, 211, 607, 646
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	131, 575
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	478, 508, 532, 591, 708
MseI	TTAA	2 cut(s)	15, 405
MslI	CAYNNNNRTG	2 cut(s)	620, 760
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	243, 381
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	171, 440
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 164, 590, 737
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	324, 483, 509
NlaIII	CATG	2 cut(s)	565, 622
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	119, 157, 556, 607, 739
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	696
PstI	CTGCAG	3 cut(s)	25, 160, 319
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	620, 760
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	15, 405
SatI	GCNGC	5 cut(s)	118, 156, 555, 606, 738
Sau3AI	GATC	3 cut(s)	324, 483, 509
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	243, 381
SduI	GDGCHC	2 cut(s)	131, 575
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	3 cut(s)	21, 156, 315
SmiMI	CAYNNNNRTG	2 cut(s)	620, 760
SsiI	CCGC	5 cut(s)	117, 120, 262, 347, 582
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	241, 379
TaqI	TCGA	4 cut(s)	198, 323, 486, 719
TaqII	GACCGA	1 cut(s)	216
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	15, 405
Tru9I	TTAA	2 cut(s)	15, 405
TscAI	CASTG	2 cut(s)	118, 378
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	4 cut(s)	155, 554, 605, 737
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	4 cut(s)	227, 269, 405, 650
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	118, 378
VneI	GTGCAC	1 cut(s)	571
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	2 cut(s)	280, 354
XcmI	CCANNNNNNNNNTGG	2 cut(s)	502, 616
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.