Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

16827307 .. 16827787

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATTGACTTTGCAACTGCCATATTAGGAAAAAATGTTCGAGCAATCGCGACGGAGGTGGAAAAAAATGGAGAGCTGGCAGGCAACAAATTCACGGTGTGCCATAAGGTGGCCTATGTGTATGCCGTCTTCTACTCTAAAGCAGTGGCAGCCTGCCATGAAGACACATCTGGATGGGTTCGTAATCATTATGCCTTCAAGGAGCTCAAAGTTGAGCCAGGAACCGTTCCCATCTGCCATTTCATAAAGTCAAGGATGTCACTTGGGTTCCAAACCAAAAACCTAATTGAGTTGAATCCGTCAATCGTTCTTGTACCTGATCCATCACTTAGCCCATACAAGTTCTGGGTTTGTATGTACTCCAGTAATAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

9.06

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	47 - 84	9.9e-14	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	50
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	99
AfaI	GTAC	2 cut(s)	315, 359
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	199, 295
AjnI	CCWGG	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	76, 205
AluI	AGCT	2 cut(s)	76, 205
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	2 cut(s)	121, 168
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	3 cut(s)	168, 239, 331
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	223, 269
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	121, 168
BpmI	CTGGAG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	179, 261
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	319
Bsp68I	TCGCGA	1 cut(s)	50
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	223, 269
BspPI	GGATC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	97, 226
BstC8I	GCNNGC	3 cut(s)	78, 82, 154
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	179, 261
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	2 cut(s)	121, 168
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	179, 261
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	78, 82, 154
Csp6I	GTAC	2 cut(s)	314, 358
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	76, 113, 152, 205, 217, 333
CviKI_1	RGCY	6 cut(s)	76, 113, 152, 205, 217, 333
CviQI	GTAC	2 cut(s)	314, 358
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DraIII	CACNNNGTG	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	1 cut(s)	161
FaiI	YATR	9 cut(s)	23, 105, 117, 123, 159, 192, 245, 337, 356
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	186, 268
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	49, 171
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	97, 226
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	62, 66, 156, 166, 204, 231, 330, 331
Lsp1109I	GCAGC	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	121, 173
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	89, 285
MnlI	CCTC	1 cut(s)	49
MslI	CAYNNNNRTG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	223, 269
NmuCI	GTSAC	1 cut(s)	258
NruI	TCGCGA	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	223, 269
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	2 cut(s)	315, 359
RsaNI	GTAC	2 cut(s)	314, 358
RseI	CAYNNNNRTG	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	60, 78, 111, 207, 285, 319
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	2 cut(s)	89, 285
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	97, 226
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	89, 285
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	295
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	174, 232
TspGWI	ACGGA	2 cut(s)	68, 288
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.