Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

10978079 .. 10978654

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1119700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATTGACTTCAGCACTTCCAAGCTTGGAGGAGGAAATATTCGAGCAATTTCGACAGAAGCCGGAAAGGGAGCTACATTACAGAAGTACACAATAGCTTCTGGAGTGAAGAAGTTGGCGGCGGATAAATCCGTCGTGTGTTACAAGCAGAACTATGCCTACGCTGTTTTTTACTGCCATGCAACAAAAACAACAACAGCATATGTGGTGCCCCTGAAAGGTGCCATTGGGGTGAATGTTAAAGCAGTAGCAGTCTGCCATACAGACACATCAGAGTGGAACCCTAAGCATTTGGCCTTCCAAGTGCTTAAAGTTAAGCCAGGAACGGTTCCGGTCAGCCATTTCCTTCCCAGTGATCATGTTGTCTGGGTTCTCAACCAGAAATCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

131

Amino Acids

13.98

Weight (kDa)

9.59

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	1 - 124	2.4e-48	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 221
AciI	CCGC	2 cut(s)	119, 122
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	25, 74, 98
AluI	AGCT	3 cut(s)	25, 74, 98
AoxI	GGCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	208, 221
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	355
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	4 cut(s)	210, 223, 281, 330
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	2 cut(s)	208, 221
BsiSI	CCGG	2 cut(s)	63, 332
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	2 cut(s)	119, 122
BspANI	GGCC	1 cut(s)	296
BspLI	GGNNCC	4 cut(s)	210, 223, 281, 330
BspT107I	GGYRCC	2 cut(s)	208, 221
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	285
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	179, 359, 390
CviJI	RGCY	7 cut(s)	25, 62, 74, 98, 296, 319, 339
CviKI_1	RGCY	7 cut(s)	25, 62, 74, 98, 296, 319, 339
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	182, 362, 393
FaiI	YATR	7 cut(s)	156, 180, 202, 204, 261, 360, 391
FatI	CATG	3 cut(s)	178, 358, 389
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	63, 332
Hin1II	CATG	3 cut(s)	182, 362, 393
HindIII	AAGCTT	1 cut(s)	23
HpaII	CCGG	2 cut(s)	63, 332
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	307, 356
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	182, 362, 393
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	76, 87, 227, 306, 333, 345, 352, 364
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	2 cut(s)	23, 26
MseI	TTAA	3 cut(s)	240, 309, 315
MslI	CAYNNNNRTG	2 cut(s)	230, 274
MspI	CCGG	2 cut(s)	63, 332
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	182, 362, 393
NlaIV	GGNNCC	4 cut(s)	210, 223, 281, 330
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	4 cut(s)	210, 223, 281, 330
PsrI	GAACNNNNNNTAC	2 cut(s)	143, 175
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	2 cut(s)	230, 274
SaqAI	TTAA	3 cut(s)	240, 309, 315
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	27, 76, 100, 223
SmiMI	CAYNNNNRTG	2 cut(s)	230, 274
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	119, 122
SspI	AATATT	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	43, 53
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	240, 309, 315
Tru9I	TTAA	3 cut(s)	240, 309, 315
TscAI	CASTG	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.