Rroxscaffold_4G00299510

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000559
Physical Location & Seq
Forward (+)
19462922 .. 19466096
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299510.1

Sequence Viewer

Length: 954 bp
ATGGATCAGTTTCGTCTTCTTTGCCTGTTTTCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATTGAGTATGCTAATAAGGTCAATGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCGTTGCCTTCCAAAGCTGTACAGCAACTTCTAAACCCTGCAGAAGGTGAAAGGAGTTATGCGCGGATTGGAAAGGATGCTGTAAATATTAGACCACAAGCATGCTATCGTGTCGGTACAGTCTATGCTGCCTCTAAAGAAGAAATCAAAGTGGAGCCAGGTTTGACTACATACTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACAATGCGATTCTTGAAACCCATGAGTAACAAGGCAGCTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGTAGCAAATTGCCAGAAATTCTAACATACTTTGGAGTGAAACCCAAGTCACCGGTTGCAGAAATAATGAAAAGCACAATCAAAGAGTGCGAGGCACCGGCCATTAAAGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATCGATTTCACGGTTTCAAATATTGGAAAGCACGTCCAAGTTTATTCAACTGAGGCCGAAAACGAAAACAAACAAGACTATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGAAAGGTCTATTGTGTGCCATAAGGAGAACTATGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAAGGGCTTACATGGTTCCATTGGTGGGTGCTGATGGAGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATATTGACACCACTGGCTGGAACCCTAAGCATTTGGCCTTTCAAATCCTCAAAATAAAGCCAGGAAATACAATCCCAGTCTGTCATTTCCTACACACTACCAGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

317

Amino Acids

35.32

Weight (kDa)

9.07

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 103 - 316 8.4e-77 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 846
AccII CGCG 1 cut(s) 199
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 3 cut(s) 115, 444, 746
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 3 cut(s) 156, 253, 548
AfiI CCNNNNNNNGG 3 cut(s) 179, 785, 846
AgeI ACCGGT 1 cut(s) 478
AgsI TTSAA 6 cut(s) 33, 364, 426, 591, 621, 872
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 3 cut(s) 98, 292, 889
AluBI AGCT 4 cut(s) 122, 152, 386, 821
AluI AGCT 4 cut(s) 122, 152, 386, 821
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 525, 627, 864
ApeKI GCWGC 2 cut(s) 263, 383
ApoI RAATTY 3 cut(s) 115, 444, 746
AsiGI ACCGGT 1 cut(s) 478
AspLEI GCGC 2 cut(s) 199, 554
AsuHPI GGTGA 3 cut(s) 194, 358, 468
BanI GGYRCC 1 cut(s) 520
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 2 cut(s) 8, 546
BbvI GCAGC 2 cut(s) 250, 395
BccI CCATC 2 cut(s) 83, 788
BciT130I CCWGG 3 cut(s) 100, 294, 891
BfmI CTRYAG 2 cut(s) 174, 652
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 264, 384
BlsI GCNGC 2 cut(s) 265, 385
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 3 cut(s) 100, 294, 891
BmgBI CACGTC 1 cut(s) 607
BmiI GGNNCC 5 cut(s) 291, 522, 777, 851, 945
BmrFI CCNGG 3 cut(s) 100, 294, 891
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 2 cut(s) 56, 202
BmuI ACTGGG 1 cut(s) 899
BpiI GAAGAC 2 cut(s) 8, 546
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 855
Bsa29I ATCGAT 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 785, 846
Bse118I RCCGGY 2 cut(s) 478, 523
Bse1I ACTGG 5 cut(s) 116, 673, 847, 905, 930
BseBI CCWGG 3 cut(s) 100, 294, 891
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 108, 217
BseLI CCNNNNNNNGG 3 cut(s) 179, 785, 846
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 5 cut(s) 116, 673, 847, 905, 930
BseXI GCAGC 2 cut(s) 250, 395
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 527, 629, 866
BshNI GGYRCC 1 cut(s) 520
BshTI ACCGGT 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 576
BsiSI CCGG 2 cut(s) 479, 524
BslI CCNNNNNNNGG 3 cut(s) 179, 785, 846
BsnI GGCC 3 cut(s) 527, 629, 866
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 4, 322, 573
BspACI CCGC 1 cut(s) 199
BspANI GGCC 3 cut(s) 527, 629, 866
BspCNI CTCAG 1 cut(s) 616
BspDI ATCGAT 1 cut(s) 576
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 5 cut(s) 291, 522, 777, 851, 945
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 478, 523
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 5 cut(s) 116, 673, 847, 905, 930
BssAI RCCGGY 2 cut(s) 478, 523
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 3 cut(s) 4, 322, 573
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 3 cut(s) 100, 294, 891
Bst4CI ACNGT 3 cut(s) 256, 346, 586
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 624, 855
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 108, 217
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 2 cut(s) 199, 554
BstKTI GATC 3 cut(s) 7, 325, 576
BstMBI GATC 3 cut(s) 4, 322, 573
BstNI CCWGG 3 cut(s) 100, 294, 891
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 98, 292, 889
BstSFI CTRYAG 2 cut(s) 174, 652
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 250, 395
BstV2I GAAGAC 2 cut(s) 8, 546
BstX2I RGATCY 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 3 cut(s) 527, 629, 866
BsuTUI ATCGAT 1 cut(s) 576
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 2 cut(s) 108, 217
BtsIMutI CAGTG 1 cut(s) 840
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 199, 554
Cfr10I RCCGGY 2 cut(s) 478, 523
ClaI ATCGAT 1 cut(s) 576
Csp6I GTAC 3 cut(s) 155, 252, 547
CspAI ACCGGT 1 cut(s) 478
CviAII CATG 3 cut(s) 237, 370, 772
CviQI GTAC 3 cut(s) 155, 252, 547
DdeI CTNAG 2 cut(s) 624, 855
DpnI GATC 3 cut(s) 6, 324, 575
DpnII GATC 3 cut(s) 4, 322, 573
EaeI YGGCCR 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 98, 292, 889
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 240, 373, 775
FatI CATG 3 cut(s) 236, 369, 771
Fnu4HI GCNGC 2 cut(s) 264, 384
FokI GGATG 2 cut(s) 115, 224
Fsp4HI GCNGC 2 cut(s) 264, 384
FspI TGCGCA 1 cut(s) 553
GlaI GCGC 2 cut(s) 198, 553
GluI GCNGC 2 cut(s) 264, 384
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 3 cut(s) 527, 629, 866
HapII CCGG 2 cut(s) 479, 524
HhaI GCGC 2 cut(s) 199, 554
Hin1II CATG 3 cut(s) 240, 373, 775
Hin6I GCGC 2 cut(s) 197, 552
HinP1I GCGC 2 cut(s) 197, 552
HinfI GANTC 3 cut(s) 357, 566, 672
HpaII CCGG 2 cut(s) 479, 524
HphI GGTGA 3 cut(s) 194, 358, 468
Hpy188III TCNNGA 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 153, 173
HpyCH4III ACNGT 3 cut(s) 256, 346, 586
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 3 cut(s) 176, 407, 485
HpyF3I CTNAG 2 cut(s) 624, 855
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 3 cut(s) 240, 373, 775
HspAI GCGC 2 cut(s) 197, 552
Kzo9I GATC 3 cut(s) 4, 322, 573
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 250, 395
LweI GCATC 2 cut(s) 56, 202
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 4 cut(s) 346, 374, 474, 799
MalI GATC 3 cut(s) 6, 324, 575
MboI GATC 3 cut(s) 4, 322, 573
MboII GAAGA 4 cut(s) 8, 287, 317, 551
MflI RGATCY 1 cut(s) 322
MluCI AATT 6 cut(s) 33, 63, 115, 434, 444, 746
MlyI GAGTC 1 cut(s) 681
MnlI CCTC 5 cut(s) 277, 405, 511, 619, 887
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 235
MspI CCGG 2 cut(s) 479, 524
MspR9I CCNGG 3 cut(s) 100, 294, 891
MvaI CCWGG 3 cut(s) 100, 294, 891
MvnI CGCG 1 cut(s) 199
NdeII GATC 3 cut(s) 4, 322, 573
NlaIII CATG 3 cut(s) 240, 373, 775
NlaIV GGNNCC 5 cut(s) 291, 522, 777, 851, 945
NmuCI GTSAC 2 cut(s) 346, 474
NsbI TGCGCA 1 cut(s) 553
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 357, 566
PflMI CCANNNNNTGG 1 cut(s) 846
PfoI TCCNGGA 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 478
PkrI GCNGC 2 cut(s) 265, 385
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 98, 292, 889
PspGI CCWGG 3 cut(s) 98, 292, 889
PspN4I GGNNCC 5 cut(s) 291, 522, 777, 851, 945
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 3 cut(s) 156, 253, 548
RsaNI GTAC 3 cut(s) 155, 252, 547
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 2 cut(s) 264, 384
Sau3AI GATC 3 cut(s) 4, 322, 573
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 681
ScrFI CCNGG 3 cut(s) 100, 294, 891
SetI ASST 9 cut(s) 84, 124, 154, 184, 298, 388, 609, 695, 823
SfaNI GCATC 2 cut(s) 56, 202
SfcI CTRYAG 2 cut(s) 174, 652
SmiMI CAYNNNNRTG 1 cut(s) 235
SphI GCATGC 1 cut(s) 240
Sse9I AATT 6 cut(s) 33, 63, 115, 434, 444, 746
SsiI CCGC 1 cut(s) 199
SspI AATATT 2 cut(s) 223, 595
StyD4I CCNGG 3 cut(s) 98, 292, 889
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 256, 346, 586
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 576
TasI AATT 6 cut(s) 33, 63, 115, 434, 444, 746
TatI WGTACW 2 cut(s) 154, 546
TfiI GAWTC 2 cut(s) 357, 566
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 2 cut(s) 346, 474
TseI GCWGC 2 cut(s) 263, 383
Tsp45I GTSAC 2 cut(s) 346, 474
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 847
Van91I CCANNNNNTGG 1 cut(s) 846
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 3 cut(s) 115, 444, 746
XceI RCATGY 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.