Rh1AG263600

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000559
Physical Location & Seq
Reverse (-)
48865444 .. 48870567
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG263600.1

Sequence Viewer

Length: 990 bp
ATGAGGCCGCAAATGGATACAACCAACGTCGGTATACCAACGTCTGTGGTGGCATCAGTAGTGGTGGGAATTGGGTATGCTAATAAAGTTGATGATGGCAAGTCCTGGATGTCTTACTGGAATGCAGCTTTGCCAAAATCTCCATTGCCTTCCAAAGCTGTACAACAACTTCTACACCCTGCAGGTATGCTCATCAAAGGAACTGATATATTGTCACAAGGTCAAAGAAGTTACACTGTGATTGGAAAGGATGTTGTAAGTCTTACACATGTACCGTCAAAAATATTTATTTATTCTGCTGCCTCTCTAGAAGTCAAAGTGGAGCCAGGTTTAACTACATTCTTCCAAGGAAAAGATCTTCAGCATTTGGGGAAAACGGTGACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCGAGTTTCAGAGTCCATACCCTTTTCGAGTAGCAAGTTGCCAGAAATTCTAACCTACTTTGGAGTGAAACCCAAATCAGCGGTTGCAGAAATAATGAAAAGGACAATCGAAGAGTGTGAGGCACCGGCCATTAAAGGCGAAGACAAGTACTGCGCAACATCGCTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAATGTAAACAAACAAGACTATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGTGTGCCATAAGGAGAACTATGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAACAAGGGCTTACATGCTTCCGTTGGTGGGTGCTGATGGGGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATACTGATACCACTAGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCAGTCTGTCATTTTCTGCCCACTACCGGTTTTTTGTGGGCTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

329

Amino Acids

36.11

Weight (kDa)

9.17

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 114 - 327 8.3e-74 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 882
AccI GTMKAC 1 cut(s) 34
AciI CCGC 2 cut(s) 8, 512
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 2 cut(s) 477, 779
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 4 cut(s) 162, 273, 581, 638
AfiI CCNNNNNNNGG 3 cut(s) 821, 882, 965
AflIII ACRYGT 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 965
AgsI TTSAA 3 cut(s) 397, 624, 908
AjnI CCWGG 3 cut(s) 104, 325, 925
AluBI AGCT 5 cut(s) 128, 158, 628, 857, 882
AluI AGCT 5 cut(s) 128, 158, 628, 857, 882
Alw26I GTCTC 1 cut(s) 714
AoxI GGCC 4 cut(s) 5, 558, 660, 900
ApeKI GCWGC 2 cut(s) 125, 299
ApoI RAATTY 2 cut(s) 477, 779
AsiGI ACCGGT 1 cut(s) 965
AspLEI GCGC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 391
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BanI GGYRCC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 137, 286
BccI CCATC 2 cut(s) 89, 824
BciT130I CCWGG 3 cut(s) 106, 327, 927
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 3 cut(s) 308, 596, 879
BfmI CTRYAG 2 cut(s) 180, 685
BfuAI ACCTGC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 10
BglII AGATCT 1 cut(s) 355
BisI GCNGC 3 cut(s) 8, 126, 300
BlsI GCNGC 3 cut(s) 9, 127, 301
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 3 cut(s) 106, 327, 927
BmiI GGNNCC 3 cut(s) 324, 555, 887
BmrFI CCNGG 3 cut(s) 106, 327, 927
BmrI ACTGGG 1 cut(s) 935
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 935
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 891
Bsa29I ATCGAT 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 346, 657
BsaWI WCCGGW 1 cut(s) 965
Bsc4I CCNNNNNNNGG 3 cut(s) 821, 882, 965
Bse118I RCCGGY 2 cut(s) 556, 965
Bse1I ACTGG 3 cut(s) 122, 706, 941
Bse3DI GCAATG 2 cut(s) 143, 383
BseBI CCWGG 3 cut(s) 106, 327, 927
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 346, 657
BseGI GGATG 2 cut(s) 114, 256
BseLI CCNNNNNNNGG 3 cut(s) 821, 882, 965
BseMI GCAATG 2 cut(s) 143, 383
BseNI ACTGG 3 cut(s) 122, 706, 941
BseXI GCAGC 2 cut(s) 137, 286
BshFI GGCC 4 cut(s) 7, 560, 662, 902
BshNI GGYRCC 1 cut(s) 553
BshTI ACCGGT 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 609
BsiSI CCGG 2 cut(s) 557, 966
BslI CCNNNNNNNGG 3 cut(s) 821, 882, 965
BsmAI GTCTC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 4 cut(s) 7, 560, 662, 902
Bsp1407I TGTACA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 355, 606
BspACI CCGC 2 cut(s) 8, 512
BspANI GGCC 4 cut(s) 7, 560, 662, 902
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 3 cut(s) 324, 555, 887
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 143, 383
BsrFI RCCGGY 2 cut(s) 556, 965
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 3 cut(s) 122, 706, 941
BssAI RCCGGY 2 cut(s) 556, 965
BssECI CCNNGG 2 cut(s) 346, 657
BssMI GATC 2 cut(s) 355, 606
BssNAI GTATAC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 346
Bst1107I GTATAC 1 cut(s) 35
Bst2UI CCWGG 3 cut(s) 106, 327, 927
Bst4CI ACNGT 4 cut(s) 238, 276, 379, 619
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 891
BstF5I GGATG 2 cut(s) 114, 256
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 2 cut(s) 358, 609
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 2 cut(s) 355, 606
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 3 cut(s) 106, 327, 927
BstNSI RCATGY 2 cut(s) 272, 811
BstSCI CCNGG 3 cut(s) 104, 325, 925
BstSFI CTRYAG 2 cut(s) 180, 685
BstV1I GCAGC 2 cut(s) 137, 286
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 609
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 4 cut(s) 7, 560, 662, 902
BsuTUI ATCGAT 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 2 cut(s) 114, 256
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 2 cut(s) 556, 965
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 4 cut(s) 161, 272, 580, 637
CspAI ACCGGT 1 cut(s) 965
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 2 cut(s) 269, 808
CviQI GTAC 4 cut(s) 161, 272, 580, 637
DdeI CTNAG 1 cut(s) 891
DpnI GATC 2 cut(s) 357, 608
DpnII GATC 2 cut(s) 355, 606
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 104, 325, 925
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 272, 811
FatI CATG 2 cut(s) 268, 807
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 8, 126, 300
FokI GGATG 2 cut(s) 121, 263
Fsp4HI GCNGC 3 cut(s) 8, 126, 300
FspBI CTAG 3 cut(s) 308, 596, 879
FspI TGCGCA 1 cut(s) 586
GlaI GCGC 1 cut(s) 586
GluI GCNGC 3 cut(s) 8, 126, 300
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 4 cut(s) 7, 560, 662, 902
HapII CCGG 2 cut(s) 557, 966
HhaI GCGC 1 cut(s) 587
Hin1II CATG 2 cut(s) 272, 811
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 390, 443, 599, 705
HpaII CCGG 2 cut(s) 557, 966
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 35, 673
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 2 cut(s) 308, 394
Hpy8I GTNNAC 2 cut(s) 35, 673
Hpy99I CGWCG 2 cut(s) 32, 435
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 4 cut(s) 238, 276, 379, 619
HpyCH4IV ACGT 3 cut(s) 27, 41, 639
HpyCH4V TGCA 4 cut(s) 125, 182, 518, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 3 cut(s) 27, 41, 639
Hsp92II CATG 2 cut(s) 272, 811
HspAI GCGC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 355, 606
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 137, 286
LweI GCATC 1 cut(s) 62
MaeI CTAG 3 cut(s) 308, 596, 879
MaeII ACGT 3 cut(s) 27, 41, 639
MaeIII GTNAC 5 cut(s) 213, 230, 379, 407, 835
MalI GATC 2 cut(s) 357, 608
MboI GATC 2 cut(s) 355, 606
MboII GAAGA 4 cut(s) 334, 350, 554, 584
MflI RGATCY 1 cut(s) 355
MluCI AATT 3 cut(s) 69, 477, 779
MlyI GAGTC 2 cut(s) 452, 714
MnlI CCTC 5 cut(s) 313, 438, 544, 652, 923
MseI TTAA 2 cut(s) 332, 564
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 557, 966
MspR9I CCNGG 3 cut(s) 106, 327, 927
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 3 cut(s) 106, 327, 927
MwoI GCNNNNNNNGC 1 cut(s) 659
NdeII GATC 2 cut(s) 355, 606
NlaIII CATG 2 cut(s) 272, 811
NlaIV GGNNCC 3 cut(s) 324, 555, 887
NmuCI GTSAC 2 cut(s) 213, 379
NsbI TGCGCA 1 cut(s) 586
NspI RCATGY 2 cut(s) 272, 811
PciI ACATGT 1 cut(s) 268
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 390, 599
PflMI CCANNNNNTGG 1 cut(s) 882
PfoI TCCNGGA 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 965
PkrI GCNGC 3 cut(s) 9, 127, 301
PleI GAGTC 2 cut(s) 451, 713
PpsI GAGTC 2 cut(s) 451, 713
PscI ACATGT 1 cut(s) 268
Psp6I CCWGG 3 cut(s) 104, 325, 925
PspGI CCWGG 3 cut(s) 104, 325, 925
PspN4I GGNNCC 3 cut(s) 324, 555, 887
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 4 cut(s) 162, 273, 581, 638
RsaNI GTAC 4 cut(s) 161, 272, 580, 637
SaqAI TTAA 2 cut(s) 332, 564
SatI GCNGC 3 cut(s) 8, 126, 300
Sau3AI GATC 2 cut(s) 355, 606
SbfI CCTGCAGG 1 cut(s) 184
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 2 cut(s) 452, 714
ScrFI CCNGG 3 cut(s) 106, 327, 927
SdaI CCTGCAGG 1 cut(s) 184
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 180, 685
Sse8387I CCTGCAGG 1 cut(s) 184
Sse9I AATT 3 cut(s) 69, 477, 779
SsiI CCGC 2 cut(s) 8, 512
SspI AATATT 1 cut(s) 285
SspMI CTAG 3 cut(s) 308, 596, 879
StyD4I CCNGG 3 cut(s) 104, 325, 925
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 4 cut(s) 238, 276, 379, 619
TaiI ACGT 3 cut(s) 30, 44, 642
TaqI TCGA 5 cut(s) 433, 458, 540, 609, 728
TasI AATT 3 cut(s) 69, 477, 779
TatI WGTACW 2 cut(s) 160, 579
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 390, 599
Tru1I TTAA 2 cut(s) 332, 564
Tru9I TTAA 2 cut(s) 332, 564
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 213, 379
TseI GCWGC 2 cut(s) 125, 299
Tsp45I GTSAC 2 cut(s) 213, 379
TspDTI ATGAA 1 cut(s) 542
TspGWI ACGGA 1 cut(s) 804
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 882
XapI RAATTY 2 cut(s) 477, 779
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 272, 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 3 cut(s) 308, 596, 879
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.