Rw1G023300

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000559
Physical Location & Seq
Reverse (-)
49035868 .. 49038660
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023300.1

Sequence Viewer

Length: 897 bp
ATGTTCTTTTTTTTTATTTTTGTTTTTATTTTATTTTTATCAATAGTGGTGGGAATTGGGTATGCTAATAAAGTTGATGATGACAATTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCAATGCCTTCCAAAGTTGTACAACAACTTCTAAACCCTGCAGGTCAAAGAAGTTACACTGGGATTGGAAAGGATGCTGTAAGTCTTACACATGTACCGTCAAAAATATTTATTTATTCTGCTGCCCCTCTAGAAGTCAAAGTGGAGCCAGGTTTACCTACATTCTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCGAGTTGCAGAGTCCATACCATTTTCGAGTAGCAAGTTGCCAGAAATTCTAACCTACTTTGGAGTGAAACCCAAATCAGCGGTTGCAGAAATAATGAAATGGACAATCGAAGAGTGTGAGGCACCGACCATTAAAGGCGAAGACAAGTACTGCGCAACATCGCTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAATGAAAACAAACAAGACTATAGAATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGTGTGCCATAAGGAGAACTACGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAACAAGGGCTTACATGGTTCTGTTGGTGGGTGCTGATGGGGTTACAAAAGCCAAAGCACATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCAGTCTGTCATTTTATGCCCACTACCGGTTTTTTGTGGGCTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

298

Amino Acids

33.31

Weight (kDa)

9.0

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 97 - 296 2.4e-58 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 502
AciI CCGC 1 cut(s) 461
AcsI RAATTY 3 cut(s) 106, 426, 728
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 4 cut(s) 147, 222, 530, 587
AfiI CCNNNNNNNGG 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 217
AgeI ACCGGT 1 cut(s) 872
AgsI TTSAA 3 cut(s) 346, 573, 815
AjnI CCWGG 3 cut(s) 89, 274, 832
AluBI AGCT 2 cut(s) 113, 577
AluI AGCT 2 cut(s) 113, 577
Alw26I GTCTC 1 cut(s) 663
AoxI GGCC 2 cut(s) 609, 807
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 3 cut(s) 106, 426, 728
AsiGI ACCGGT 1 cut(s) 872
AspLEI GCGC 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 889
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 773
BciT130I CCWGG 3 cut(s) 91, 276, 834
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 2 cut(s) 257, 545
BfmI CTRYAG 2 cut(s) 165, 634
BfuAI ACCTGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 304
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 91, 276, 834
BmiI GGNNCC 3 cut(s) 273, 504, 888
BmrFI CCNGG 3 cut(s) 91, 276, 834
BmrI ACTGGG 2 cut(s) 195, 842
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 2 cut(s) 195, 842
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 672
Bsa29I ATCGAT 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 295, 606
BsaWI WCCGGW 1 cut(s) 872
Bsc4I CCNNNNNNNGG 1 cut(s) 872
Bse118I RCCGGY 1 cut(s) 872
Bse1I ACTGG 4 cut(s) 107, 190, 655, 848
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 3 cut(s) 91, 276, 834
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 295, 606
BseGI GGATG 2 cut(s) 99, 205
BseLI CCNNNNNNNGG 1 cut(s) 872
BseMI GCAATG 1 cut(s) 332
BseNI ACTGG 4 cut(s) 107, 190, 655, 848
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 2 cut(s) 611, 809
BshNI GGYRCC 1 cut(s) 502
BshTI ACCGGT 1 cut(s) 872
BshVI ATCGAT 1 cut(s) 558
BsiSI CCGG 1 cut(s) 873
BslI CCNNNNNNNGG 1 cut(s) 872
BsmAI GTCTC 1 cut(s) 663
BsnI GGCC 2 cut(s) 611, 809
Bsp1286I GDGCHC 1 cut(s) 889
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 2 cut(s) 304, 555
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 611, 809
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 3 cut(s) 273, 504, 888
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 872
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 4 cut(s) 107, 190, 655, 848
BssAI RCCGGY 1 cut(s) 872
BssECI CCNNGG 2 cut(s) 295, 606
BssMI GATC 2 cut(s) 304, 555
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 3 cut(s) 91, 276, 834
Bst4CI ACNGT 3 cut(s) 225, 328, 568
Bst6I CTCTTC 1 cut(s) 486
BstAUI TGTACA 1 cut(s) 145
BstF5I GGATG 2 cut(s) 99, 205
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 2 cut(s) 307, 558
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 304, 555
BstMWI GCNNNNNNNGC 2 cut(s) 608, 806
BstNI CCWGG 3 cut(s) 91, 276, 834
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 89, 274, 832
BstSFI CTRYAG 2 cut(s) 165, 634
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 2 cut(s) 611, 809
BsuTUI ATCGAT 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 2 cut(s) 99, 205
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 158
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 872
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 4 cut(s) 146, 221, 529, 586
CspAI ACCGGT 1 cut(s) 872
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 2 cut(s) 218, 757
CviJI RGCY 9 cut(s) 113, 274, 577, 611, 752, 794, 809, 832, 887
CviKI_1 RGCY 9 cut(s) 113, 274, 577, 611, 752, 794, 809, 832, 887
CviQI GTAC 4 cut(s) 146, 221, 529, 586
DpnI GATC 2 cut(s) 306, 557
DpnII GATC 2 cut(s) 304, 555
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 889
Eco57I CTGAAG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 89, 274, 832
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 221, 760
FatI CATG 2 cut(s) 217, 756
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 2 cut(s) 106, 212
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 257, 545
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 2 cut(s) 611, 809
HapII CCGG 1 cut(s) 873
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 221, 760
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 339, 392, 548, 654
HpaII CCGG 1 cut(s) 873
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 257, 343
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 3 cut(s) 225, 328, 568
HpyCH4IV ACGT 2 cut(s) 588, 702
HpyCH4V TGCA 4 cut(s) 167, 389, 467, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 806
HpySE526I ACGT 2 cut(s) 588, 702
Hsp92II CATG 2 cut(s) 221, 760
HspAI GCGC 1 cut(s) 534
Kzo9I GATC 2 cut(s) 304, 555
LmnI GCTCC 2 cut(s) 271, 892
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 257, 545
MaeII ACGT 2 cut(s) 588, 702
MaeIII GTNAC 4 cut(s) 179, 328, 356, 784
MalI GATC 2 cut(s) 306, 557
MboI GATC 2 cut(s) 304, 555
MboII GAAGA 4 cut(s) 283, 299, 503, 533
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 889
MluCI AATT 6 cut(s) 54, 85, 106, 426, 639, 728
MlyI GAGTC 2 cut(s) 401, 663
MnlI CCTC 5 cut(s) 264, 387, 493, 601, 830
MseI TTAA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 873
MspR9I CCNGG 3 cut(s) 91, 276, 834
MvaI CCWGG 3 cut(s) 91, 276, 834
MwoI GCNNNNNNNGC 2 cut(s) 608, 806
NdeII GATC 2 cut(s) 304, 555
NlaIII CATG 2 cut(s) 221, 760
NlaIV GGNNCC 3 cut(s) 273, 504, 888
NmuCI GTSAC 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 535
NspI RCATGY 1 cut(s) 221
PciI ACATGT 1 cut(s) 217
PfeI GAWTC 2 cut(s) 339, 548
PfoI TCCNGGA 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 872
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 2 cut(s) 400, 662
PpsI GAGTC 2 cut(s) 400, 662
PscI ACATGT 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 89, 274, 832
PspGI CCWGG 3 cut(s) 89, 274, 832
PspN4I GGNNCC 3 cut(s) 273, 504, 888
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 4 cut(s) 147, 222, 530, 587
RsaNI GTAC 4 cut(s) 146, 221, 529, 586
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 304, 555
SbfI CCTGCAGG 1 cut(s) 169
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 401, 663
ScrFI CCNGG 3 cut(s) 91, 276, 834
SdaI CCTGCAGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 889
SetI ASST 9 cut(s) 115, 172, 280, 286, 437, 579, 591, 677, 705
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 165, 634
Sse8387I CCTGCAGG 1 cut(s) 169
Sse9I AATT 6 cut(s) 54, 85, 106, 426, 639, 728
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 234
SspMI CTAG 2 cut(s) 257, 545
StyD4I CCNGG 3 cut(s) 89, 274, 832
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 225, 328, 568
TaiI ACGT 2 cut(s) 591, 705
TaqI TCGA 5 cut(s) 382, 407, 489, 558, 677
TasI AATT 6 cut(s) 54, 85, 106, 426, 639, 728
TatI WGTACW 2 cut(s) 145, 528
TfiI GAWTC 2 cut(s) 339, 548
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 491, 633
TspRI CASTG 1 cut(s) 190
XapI RAATTY 3 cut(s) 106, 426, 728
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 2 cut(s) 731, 802
XspI CTAG 2 cut(s) 257, 545
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.