Prupe.1G477000_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39882597 .. 39884880
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G477000.1

Sequence Viewer

Length: 1008 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCAGTGGGAAACCATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGTACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACATATATGAATGCTGTTGGGAATGGAAAGGGCAAACCTGAAATTTTCCCATTGGGCATTAGACGTTACGTTCAAAAACGGTATGGAGGGGGCATTAGACGTTACAATCAAGAACGGTATGGAAAAGGTCCTCCTCCATCTGACAATCAACTACTCCATTATAAAGACTTGGCTATTTTCTTCTTCGAGAAGGACATGCGCCCTGGCGCAACAATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTCTAACAAACTATCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCCAAGAGTGTGAAGCTCCAGGCCTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCGACGGAGGTATTGGAAAGAGGAGCCACCATGTCCATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAAACAGCAGCATATGTTCTCTCCCTGAAAGGCGATGATGGGGAGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGAACCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACAATTCCCATCTGCCATTTCATTTCCACTGATGGTATTGTCTGGGTTCCAAAACACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

336

Amino Acids

37.37

Weight (kDa)

9.05

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AarI CACCTGC 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 725
AccII CGCG 1 cut(s) 435
AclI AACGTT 2 cut(s) 645, 927
AclWI GGATC 1 cut(s) 445
AcsI RAATTY 3 cut(s) 213, 406, 480
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 1 cut(s) 135
AflII CTTAAG 1 cut(s) 566
AgsI TTSAA 4 cut(s) 245, 411, 487, 650
AjnI CCWGG 2 cut(s) 373, 559
AluBI AGCT 2 cut(s) 557, 631
AluI AGCT 2 cut(s) 557, 631
Alw21I GWGCWC 2 cut(s) 173, 445
AlwI GGATC 1 cut(s) 445
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 3 cut(s) 44, 62, 812
ApoI RAATTY 3 cut(s) 213, 406, 480
AspLEI GCGC 3 cut(s) 372, 380, 590
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 2 cut(s) 717, 936
AsuHPI GGTGA 1 cut(s) 749
AsuII TTCGAA 1 cut(s) 626
AvaII GGWCC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 173, 445
BbvI GCAGC 3 cut(s) 49, 56, 824
BccI CCATC 6 cut(s) 316, 836, 875, 882, 956, 965
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 375, 561
BcnI CCSGG 2 cut(s) 717, 936
BfaI CTAG 3 cut(s) 41, 402, 878
BfrI CTTAAG 1 cut(s) 566
BfuAI ACCTGC 1 cut(s) 725
BglII AGATCT 1 cut(s) 122
BisI GCNGC 3 cut(s) 45, 63, 813
BlsI GCNGC 3 cut(s) 46, 64, 814
Bme1390I CCNGG 4 cut(s) 375, 561, 717, 936
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 682, 896, 987
BmrFI CCNGG 4 cut(s) 375, 561, 717, 936
BmsI GCATC 2 cut(s) 105, 151
BpmI CTGGAG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 626
BpuMI CCSGG 2 cut(s) 717, 936
Bsa29I ATCGAT 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 2 cut(s) 375, 561
BseCI ATCGAT 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 294, 451, 693
BseXI GCAGC 3 cut(s) 49, 56, 824
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 173, 445
BsiSI CCGG 2 cut(s) 716, 936
BslFI GGGAC 1 cut(s) 732
BsmFI GGGAC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 173, 445
Bsp143I GATC 2 cut(s) 122, 450
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 449
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 3 cut(s) 682, 896, 987
BspMI ACCTGC 1 cut(s) 725
BspPI GGATC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 626
BspTI CTTAAG 1 cut(s) 566
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 2 cut(s) 122, 450
Bst2UI CCWGG 2 cut(s) 375, 561
Bst4CI ACNGT 2 cut(s) 252, 288
BstAFI CTTAAG 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 626
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 435
BstHHI GCGC 3 cut(s) 372, 380, 590
BstKTI GATC 2 cut(s) 125, 453
BstMBI GATC 2 cut(s) 122, 450
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 375, 561
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 373, 559, 715, 934
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 49, 56, 824
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 449
BsuRI GGCC 1 cut(s) 564
BsuTUI ATCGAT 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 852
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 4 cut(s) 54, 136, 504, 966
BveI ACCTGC 1 cut(s) 725
CfoI GCGC 3 cut(s) 372, 380, 590
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 6 cut(s) 59, 367, 688, 694, 794, 1005
CviJI RGCY 9 cut(s) 344, 419, 505, 521, 557, 564, 631, 683, 934
CviKI_1 RGCY 9 cut(s) 344, 419, 505, 521, 557, 564, 631, 683, 934
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 124, 452
DpnII GATC 2 cut(s) 122, 450
Eco147I AGGCCT 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 373, 559
FaeI CATG 6 cut(s) 62, 370, 691, 697, 797, 1008
FaqI GGGAC 1 cut(s) 732
FatI CATG 6 cut(s) 58, 366, 687, 693, 793, 1004
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 3 cut(s) 45, 63, 813
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 45, 63, 813
FspBI CTAG 3 cut(s) 41, 402, 878
GlaI GCGC 3 cut(s) 371, 379, 589
GluI GCNGC 3 cut(s) 45, 63, 813
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 1 cut(s) 564
HapII CCGG 2 cut(s) 716, 936
HhaI GCGC 3 cut(s) 372, 380, 590
Hin1II CATG 6 cut(s) 62, 370, 691, 697, 797, 1008
Hin6I GCGC 3 cut(s) 370, 378, 588
HinP1I GCGC 3 cut(s) 370, 378, 588
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 2 cut(s) 149, 602
HpaII CCGG 2 cut(s) 716, 936
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 313, 478, 889
Hpy188III TCNNGA 5 cut(s) 146, 281, 358, 658, 878
Hpy8I GTNNAC 1 cut(s) 134
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 4 cut(s) 355, 466, 844, 922
HpyCH4III ACNGT 2 cut(s) 252, 288
HpyCH4IV ACGT 5 cut(s) 235, 240, 271, 645, 927
HpyCH4V TGCA 4 cut(s) 142, 697, 797, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 5 cut(s) 235, 240, 271, 645, 927
Hsp92II CATG 6 cut(s) 62, 370, 691, 697, 797, 1008
HspAI GCGC 3 cut(s) 370, 378, 588
Kzo9I GATC 2 cut(s) 122, 450
LmnI GCTCC 2 cut(s) 562, 680
Lsp1109I GCAGC 3 cut(s) 49, 56, 824
LweI GCATC 2 cut(s) 105, 151
MaeI CTAG 3 cut(s) 41, 402, 878
MaeII ACGT 5 cut(s) 235, 240, 271, 645, 927
MaeIII GTNAC 4 cut(s) 236, 272, 737, 862
MalI GATC 2 cut(s) 124, 452
MboI GATC 2 cut(s) 122, 450
MboII GAAGA 4 cut(s) 173, 343, 346, 736
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 173, 445
MluCI AATT 6 cut(s) 213, 395, 406, 480, 528, 942
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 9 cut(s) 87, 251, 312, 315, 472, 568, 658, 671, 932
MseI TTAA 4 cut(s) 531, 567, 855, 930
MslI CAYNNNNRTG 4 cut(s) 113, 176, 692, 889
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 2 cut(s) 716, 936
MspR9I CCNGG 4 cut(s) 375, 561, 717, 936
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 2 cut(s) 375, 561
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 2 cut(s) 717, 936
NdeI CATATG 1 cut(s) 817
NdeII GATC 2 cut(s) 122, 450
NlaIII CATG 6 cut(s) 62, 370, 691, 697, 797, 1008
NlaIV GGNNCC 3 cut(s) 682, 896, 987
NmuCI GTSAC 1 cut(s) 737
NspI RCATGY 1 cut(s) 370
NspV TTCGAA 1 cut(s) 626
PaqCI CACCTGC 1 cut(s) 725
PceI AGGCCT 1 cut(s) 564
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 602
PflFI GACNNNGTC 1 cut(s) 743
PkrI GCNGC 3 cut(s) 46, 64, 814
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 299
PsiI TTATAA 1 cut(s) 333
Psp1406I AACGTT 2 cut(s) 645, 927
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 373, 559
PspGI CCWGG 2 cut(s) 373, 559
PspN4I GGNNCC 3 cut(s) 682, 896, 987
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
PsuI RGATCY 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 743
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 4 cut(s) 113, 176, 692, 889
SaqAI TTAA 4 cut(s) 531, 567, 855, 930
SatI GCNGC 3 cut(s) 45, 63, 813
Sau3AI GATC 2 cut(s) 122, 450
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 375, 561, 717, 936
SduI GDGCHC 2 cut(s) 173, 445
SfaNI GCATC 2 cut(s) 105, 151
SfuI TTCGAA 1 cut(s) 626
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 4 cut(s) 113, 176, 692, 889
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 6 cut(s) 213, 395, 406, 480, 528, 942
SseBI AGGCCT 1 cut(s) 564
SspI AATATT 1 cut(s) 584
SspMI CTAG 3 cut(s) 41, 402, 878
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 4 cut(s) 373, 559, 715, 934
TaaI ACNGT 2 cut(s) 252, 288
TaiI ACGT 5 cut(s) 238, 243, 274, 648, 930
TaqI TCGA 4 cut(s) 357, 449, 626, 659
TasI AATT 6 cut(s) 213, 395, 406, 480, 528, 942
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 4 cut(s) 531, 567, 855, 930
Tru9I TTAA 4 cut(s) 531, 567, 855, 930
TscAI CASTG 4 cut(s) 54, 136, 504, 973
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 3 cut(s) 44, 62, 812
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 4 cut(s) 174, 194, 401, 949
TspGWI ACGGA 2 cut(s) 85, 677
TspRI CASTG 4 cut(s) 54, 136, 504, 973
Tth111I GACNNNGTC 1 cut(s) 743
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 3 cut(s) 213, 406, 480
XbaI TCTAGA 1 cut(s) 877
XceI RCATGY 1 cut(s) 370
XspI CTAG 3 cut(s) 41, 402, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.