Rmu_sc0000281.1_g000019

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000281.1
OG0000559
Physical Location & Seq
Forward (+)
83249 .. 83950
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000281.1_g000019.1.cds

Sequence Viewer

Length: 702 bp
atgcagctcatcaaaggaactgatgtattgtcactaggtcaaagaagttacactgggattggaaaggatgctgtaagtcttacacatgtaccgtcaaaaatatttatttattctgctgcccctctagaagtcaaagtggagccaggtttaactacattcttccaaggaaaagatcttcagcatttgggaaaaacggtgacattgcgattcttgaaacccacaagtaacaaggcaactcttttgcctcgtcgagttgcagagtccataccattttcgagtagcaagttgccagaaattctaacctactttggagtgaaacccaaatcagcggttgcagaaataatgaaatggacaatcgaagagtgtgaggcaccgaccattaaaggcgaagacaagtactgcgcaacatcgctagaatccttgatcgatttcacggtttcaaagcttgggaagtacgtccaagtttatgcaaccgaggccgaaaatgaaaacaaacaagactatagaattgagattactggagtccaaagtattggagacaggtcgattgtgtgccataaggagaactacgtttatggtgtgttttactgccacaaattctatggcacaacaacaagggcttacatggttctgttggtgggtgctgatggggttacaaaagccaaagcagtagctatttgccatactgataccactagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

233

Amino Acids

25.75

Weight (kDa)

8.66

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 370
AciI CCGC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 294, 596
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 3 cut(s) 90, 398, 455
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 214, 441
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 7, 445, 674, 699
AluI AGCT 4 cut(s) 7, 445, 674, 699
Alw26I GTCTC 1 cut(s) 531
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 4, 116
ApoI RAATTY 2 cut(s) 294, 596
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BanI GGYRCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 16, 103
BccI CCATC 1 cut(s) 641
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 4 cut(s) 35, 125, 413, 696
BfmI CTRYAG 1 cut(s) 502
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 5, 117
BlsI GCNGC 2 cut(s) 6, 118
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 141, 372
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 163, 474
Bse1I ACTGG 2 cut(s) 58, 523
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 163, 474
BseGI GGATG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 58, 523
BseXI GCAGC 2 cut(s) 16, 103
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 370
BshVI ATCGAT 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 531
BsnI GGCC 1 cut(s) 479
Bsp143I GATC 2 cut(s) 172, 423
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 479
BspDI ATCGAT 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 141, 372
BspT107I GGYRCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 2 cut(s) 58, 523
BssECI CCNNGG 2 cut(s) 163, 474
BssMI GATC 2 cut(s) 172, 423
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 93, 196, 436
Bst6I CTCTTC 1 cut(s) 354
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 2 cut(s) 175, 426
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 2 cut(s) 172, 423
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 502
BstV1I GCAGC 2 cut(s) 16, 103
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 426
Csp6I GTAC 3 cut(s) 89, 397, 454
CviAII CATG 2 cut(s) 86, 625
CviJI RGCY 8 cut(s) 7, 142, 445, 479, 620, 662, 674, 699
CviKI_1 RGCY 8 cut(s) 7, 142, 445, 479, 620, 662, 674, 699
CviQI GTAC 3 cut(s) 89, 397, 454
DpnI GATC 2 cut(s) 174, 425
DpnII GATC 2 cut(s) 172, 423
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 89, 628
FaiI YATR 9 cut(s) 87, 266, 468, 504, 558, 576, 603, 626, 684
FatI CATG 2 cut(s) 85, 624
Fnu4HI GCNGC 2 cut(s) 5, 117
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 5, 117
FspBI CTAG 4 cut(s) 35, 125, 413, 696
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 5, 117
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 1 cut(s) 479
HhaI GCGC 1 cut(s) 404
Hin1II CATG 2 cut(s) 89, 628
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 4 cut(s) 207, 260, 416, 522
HphI GGTGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 125, 211
Hpy99I CGWCG 1 cut(s) 252
HpyCH4III ACNGT 3 cut(s) 93, 196, 436
HpyCH4IV ACGT 2 cut(s) 456, 570
HpyCH4V TGCA 4 cut(s) 4, 257, 335, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 456, 570
Hsp92II CATG 2 cut(s) 89, 628
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 172, 423
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 39, 129, 156, 303, 504, 526
Lsp1109I GCAGC 2 cut(s) 16, 103
LweI GCATC 1 cut(s) 58
MaeI CTAG 4 cut(s) 35, 125, 413, 696
MaeII ACGT 2 cut(s) 456, 570
MaeIII GTNAC 5 cut(s) 30, 47, 196, 224, 652
MalI GATC 2 cut(s) 174, 425
MboI GATC 2 cut(s) 172, 423
MboII GAAGA 4 cut(s) 151, 167, 371, 401
MflI RGATCY 1 cut(s) 172
MluCI AATT 3 cut(s) 294, 507, 596
MlyI GAGTC 2 cut(s) 269, 531
MnlI CCTC 4 cut(s) 132, 255, 361, 469
MseI TTAA 2 cut(s) 149, 381
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 172, 423
NlaIII CATG 2 cut(s) 89, 628
NlaIV GGNNCC 2 cut(s) 141, 372
NmuCI GTSAC 2 cut(s) 30, 196
NsbI TGCGCA 1 cut(s) 403
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 207, 416
PkrI GCNGC 2 cut(s) 6, 118
PleI GAGTC 2 cut(s) 268, 530
PpsI GAGTC 2 cut(s) 268, 530
PscI ACATGT 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 141, 372
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 3 cut(s) 90, 398, 455
RsaNI GTAC 3 cut(s) 89, 397, 454
SaqAI TTAA 2 cut(s) 149, 381
SatI GCNGC 2 cut(s) 5, 117
Sau3AI GATC 2 cut(s) 172, 423
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 269, 531
ScrFI CCNGG 1 cut(s) 144
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 502
Sse9I AATT 3 cut(s) 294, 507, 596
SsiI CCGC 1 cut(s) 329
SspI AATATT 1 cut(s) 102
SspMI CTAG 4 cut(s) 35, 125, 413, 696
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 93, 196, 436
TaiI ACGT 2 cut(s) 459, 573
TaqI TCGA 5 cut(s) 250, 275, 357, 426, 545
TasI AATT 3 cut(s) 294, 507, 596
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 207, 416
Tru1I TTAA 2 cut(s) 149, 381
Tru9I TTAA 2 cut(s) 149, 381
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 2 cut(s) 30, 196
TseI GCWGC 2 cut(s) 4, 116
Tsp45I GTSAC 2 cut(s) 30, 196
TspDTI ATGAA 2 cut(s) 359, 501
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 294, 596
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XspI CTAG 4 cut(s) 35, 125, 413, 696
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.