FvH4_7g14680

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000559
Physical Location & Seq
Reverse (-)
12921104 .. 12922651
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14680.t1

Sequence Viewer

Length: 951 bp
ATGGATCAGTTTCGTCTTCTATGCATGTTTTCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATAGGCTATGCAAACAAGGTCAATGATGCCAAATCCTGGATGTTTTACTGGAATTCAGCTTTGCCAAAATCTCCATTGCCTACTAAAGCTGTACAGCAAGTCCTAAACCCTGTAGGTGAAAGAAGTTACGCTGGGATTGGAAGGGACGCTATTAATCCTGCAGTATCATGCCTTGTTTATCATTCTCACAGTATTGGATCTGCAGAAGAATTCAACGTGGAGCCAGGTTTAACTACATTCTTCCAAGGAAACGATCTTCAACATTCGGGAAAAACGGTGACAATGCGATTCTTGAAACCCACAAGTAACAAGGCAGCTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTAGAGTGAAACCCAAGTCAGGTTATGCAGAAATAATGAAAAAGACAATCGAAGGCTGTGAGAAACCGGCCATTAAGGCCGAAGACAAGTATTGCGCAACATCGCTAGAATCCTTGATCGACTTCATGGTGTCTAAGCTCGGGAAGCACGTCCAGGTCTATTCAACCGAGGCGGAAGATGAAAGCAAACAAGAATATAGAATTGAGACTACCGGAGTCCAAAGTATTGGAGACAGATCGGTTGTGTGCCATAAGGAGAGCTATGTTTATGGTGTGTTTTACTGCCACAAATTCGATGACACAGCCACAAAGGCTTACATGGTTCCGTTGGTGGCTGCTGATGGAGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATATTGACACCACTGGCTGGAACCCTAAGCATTTGGCCTTTCGAGTCCTGAAAATAAAACCGGGAAATACAGTCCCGGTCTGTCATTTTCTACACACTACCAGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

317

Amino Acids

35.12

Weight (kDa)

8.94

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 101 - 315 9e-76 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 547
AccB7I CCANNNNNTGG 2 cut(s) 99, 843
AciI CCGC 1 cut(s) 623
AclWI GGATC 2 cut(s) 12, 268
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 4 cut(s) 115, 272, 438, 740
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 3 cut(s) 99, 470, 843
AgsI TTSAA 6 cut(s) 33, 277, 323, 358, 420, 615
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 3 cut(s) 98, 286, 603
AluBI AGCT 6 cut(s) 122, 152, 380, 589, 711, 818
AluI AGCT 6 cut(s) 122, 152, 380, 589, 711, 818
Alw26I GTCTC 2 cut(s) 650, 675
AlwI GGATC 2 cut(s) 12, 268
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 3 cut(s) 519, 528, 861
ApeKI GCWGC 3 cut(s) 377, 423, 785
ApoI RAATTY 4 cut(s) 115, 272, 438, 740
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 1 cut(s) 548
AsuC2I CCSGG 2 cut(s) 888, 902
AsuHPI GGTGA 2 cut(s) 191, 352
AvaI CYCGRG 1 cut(s) 590
BbsI GAAGAC 2 cut(s) 8, 540
BbvI GCAGC 3 cut(s) 389, 435, 772
BccI CCATC 1 cut(s) 785
BciT130I CCWGG 3 cut(s) 100, 288, 605
BcnI CCSGG 2 cut(s) 888, 902
BcoDI GTCTC 2 cut(s) 650, 675
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 3 cut(s) 174, 222, 264
BglI GCCNNNNNGGC 2 cut(s) 527, 761
BisI GCNGC 3 cut(s) 378, 424, 786
BlsI GCNGC 3 cut(s) 379, 425, 787
Bme1390I CCNGG 5 cut(s) 100, 288, 605, 888, 902
BmeT110I CYCGRG 1 cut(s) 590
BmgBI CACGTC 1 cut(s) 601
BmiI GGNNCC 4 cut(s) 285, 774, 848, 942
BmrFI CCNGG 5 cut(s) 100, 288, 605, 888, 902
BmsI GCATC 2 cut(s) 56, 79
BpiI GAAGAC 2 cut(s) 8, 540
Bpu10I CCTNAGC 1 cut(s) 852
BpuMI CCSGG 2 cut(s) 888, 902
BsaJI CCNNGG 2 cut(s) 307, 618
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 470, 843
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 3 cut(s) 116, 844, 927
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 3 cut(s) 100, 288, 605
BseDI CCNNGG 2 cut(s) 307, 618
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 99, 470, 843
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 116, 844, 927
BseXI GCAGC 3 cut(s) 389, 435, 772
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 3 cut(s) 521, 530, 863
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 4 cut(s) 518, 663, 887, 902
BslFI GGGAC 2 cut(s) 221, 884
BslI CCNNNNNNNGG 3 cut(s) 99, 470, 843
BsmAI GTCTC 2 cut(s) 650, 675
BsmFI GGGAC 2 cut(s) 221, 884
BsnI GGCC 3 cut(s) 521, 530, 863
BsoBI CYCGRG 1 cut(s) 590
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 5 cut(s) 4, 260, 316, 567, 686
BspACI CCGC 1 cut(s) 623
BspANI GGCC 3 cut(s) 521, 530, 863
BspLI GGNNCC 4 cut(s) 285, 774, 848, 942
BspMAI CTGCAG 2 cut(s) 226, 268
BspPI GGATC 2 cut(s) 12, 268
BsrDI GCAATG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 3 cut(s) 116, 844, 927
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 307, 618
BssMI GATC 5 cut(s) 4, 260, 316, 567, 686
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 3 cut(s) 100, 288, 605
Bst4CI ACNGT 3 cut(s) 254, 340, 898
BstAUI TGTACA 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 585, 852
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 5 cut(s) 7, 263, 319, 570, 689
BstMAI GTCTC 2 cut(s) 650, 675
BstMBI GATC 5 cut(s) 4, 260, 316, 567, 686
BstMWI GCNNNNNNNGC 3 cut(s) 527, 595, 761
BstNI CCWGG 3 cut(s) 100, 288, 605
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 5 cut(s) 98, 286, 603, 886, 900
BstSFI CTRYAG 3 cut(s) 174, 222, 264
BstV1I GCAGC 3 cut(s) 389, 435, 772
BstV2I GAAGAC 2 cut(s) 8, 540
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 677
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 3 cut(s) 521, 530, 863
BtgZI GCGATG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 837
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 517
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 155
CviAII CATG 4 cut(s) 25, 231, 577, 769
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 2 cut(s) 585, 852
DpnI GATC 5 cut(s) 6, 262, 318, 569, 688
DpnII GATC 5 cut(s) 4, 260, 316, 567, 686
EaeI YGGCCR 1 cut(s) 519
EciI GGCGGA 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 590
EcoRI GAATTC 2 cut(s) 115, 272
EcoRII CCWGG 3 cut(s) 98, 286, 603
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 4 cut(s) 28, 234, 580, 772
FaqI GGGAC 2 cut(s) 221, 884
FatI CATG 4 cut(s) 24, 230, 576, 768
Fnu4HI GCNGC 3 cut(s) 378, 424, 786
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 378, 424, 786
FspBI CTAG 1 cut(s) 557
FspI TGCGCA 1 cut(s) 547
GlaI GCGC 1 cut(s) 547
GluI GCNGC 3 cut(s) 378, 424, 786
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 3 cut(s) 521, 530, 863
HapII CCGG 4 cut(s) 518, 663, 887, 902
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 548
Hin1II CATG 4 cut(s) 28, 234, 580, 772
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HinfI GANTC 4 cut(s) 351, 560, 666, 870
HpaII CCGG 4 cut(s) 518, 663, 887, 902
HphI GGTGA 2 cut(s) 191, 352
Hpy188III TCNNGA 4 cut(s) 330, 355, 592, 874
HpyAV CCTTC 2 cut(s) 198, 497
HpyCH4III ACNGT 3 cut(s) 254, 340, 898
HpyCH4IV ACGT 2 cut(s) 279, 600
HpyCH4V TGCA 6 cut(s) 24, 74, 224, 266, 401, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 595, 761
HpyF3I CTNAG 2 cut(s) 585, 852
HpySE526I ACGT 2 cut(s) 279, 600
Hsp92II CATG 4 cut(s) 28, 234, 580, 772
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 5 cut(s) 4, 260, 316, 567, 686
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 389, 435, 772
LweI GCATC 2 cut(s) 56, 79
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 279, 600
MaeIII GTNAC 4 cut(s) 188, 340, 368, 796
MalI GATC 5 cut(s) 6, 262, 318, 569, 688
MboI GATC 5 cut(s) 4, 260, 316, 567, 686
MboII GAAGA 6 cut(s) 8, 281, 295, 311, 545, 638
MflI RGATCY 1 cut(s) 260
MluCI AATT 6 cut(s) 33, 115, 272, 438, 651, 740
MlyI GAGTC 2 cut(s) 675, 879
MnlI CCTC 2 cut(s) 399, 613
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 3 cut(s) 216, 293, 525
MspI CCGG 4 cut(s) 518, 663, 887, 902
MspR9I CCNGG 5 cut(s) 100, 288, 605, 888, 902
MvaI CCWGG 3 cut(s) 100, 288, 605
MwoI GCNNNNNNNGC 3 cut(s) 527, 595, 761
NciI CCSGG 2 cut(s) 888, 902
NdeII GATC 5 cut(s) 4, 260, 316, 567, 686
NlaIII CATG 4 cut(s) 28, 234, 580, 772
NlaIV GGNNCC 4 cut(s) 285, 774, 848, 942
NmuCI GTSAC 1 cut(s) 340
NsbI TGCGCA 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PfeI GAWTC 2 cut(s) 351, 560
PflMI CCANNNNNTGG 2 cut(s) 99, 843
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 3 cut(s) 379, 425, 787
PleI GAGTC 2 cut(s) 674, 878
PpsI GAGTC 2 cut(s) 674, 878
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 98, 286, 603
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 3 cut(s) 98, 286, 603
PspN4I GGNNCC 4 cut(s) 285, 774, 848, 942
PstI CTGCAG 2 cut(s) 226, 268
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 216, 293, 525
SatI GCNGC 3 cut(s) 378, 424, 786
Sau3AI GATC 5 cut(s) 4, 260, 316, 567, 686
SchI GAGTC 2 cut(s) 675, 879
ScrFI CCNGG 5 cut(s) 100, 288, 605, 888, 902
SfaNI GCATC 2 cut(s) 56, 79
SfcI CTRYAG 3 cut(s) 174, 222, 264
SfiI GGCCNNNNNGGCC 1 cut(s) 527
Sse9I AATT 6 cut(s) 33, 115, 272, 438, 651, 740
SsiI CCGC 1 cut(s) 623
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 5 cut(s) 98, 286, 603, 886, 900
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 254, 340, 898
TaiI ACGT 2 cut(s) 282, 603
TaqI TCGA 4 cut(s) 501, 570, 744, 868
TasI AATT 6 cut(s) 33, 115, 272, 438, 651, 740
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 2 cut(s) 351, 560
Tru1I TTAA 3 cut(s) 216, 293, 525
Tru9I TTAA 3 cut(s) 216, 293, 525
TscAI CASTG 1 cut(s) 844
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 377, 423, 785
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 503, 565, 645
TspGWI ACGGA 1 cut(s) 765
TspRI CASTG 1 cut(s) 844
Van91I CCANNNNNTGG 2 cut(s) 99, 843
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 4 cut(s) 115, 272, 438, 740
XceI RCATGY 1 cut(s) 28
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.