Prupe.1G476200_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39697809 .. 39699973
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476200.1

Sequence Viewer

Length: 1335 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCGGTTGCACTGGCAAACAATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCAAACCTGAAATTTTCCCATTGCAGGGCAATAGAGTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAACTTTCCCATTGGGCAATAGCCATTACACTCAAACCCGTTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGGCAATAGCCATTACACTCAAACCCGTTATAAAAAACGTCCTCCTCCTCCATCCGACGAGGGCAAACCTGAAAATTTCCCATTGGCCAATAGCTTTTACACTCAAACCCGTTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGCCAATAGCTTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGCACGTTCTCCTCCATCTGACAGTCAACTAAAGCATTACAAAGACTTAGCTATTTTCTTCTTCGAGAAGGACATGCGCCCGGGCACAACTATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTCTAAGAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCCTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCAACGGAGGTATTGGAAGAAGGAGCCACCAAGTACATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGAAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTCTCTGCCATGCAATAAAACAAACAGAAGCTTATGTTCTCTCCCTGAAAGCCGATGATGGGATGAAGGTGAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGACCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACCACTCCCATCTGCCATTTCCTTACCACTGATGCTATTGCCTGGGTTCCAAAACACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

445

Amino Acids

50.14

Weight (kDa)

8.72

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 231, 315, 399, 483, 567
AccII CGCG 1 cut(s) 762
AciI CCGC 1 cut(s) 47
AclI AACGTT 2 cut(s) 972, 1254
AclWI GGATC 1 cut(s) 772
AcoI YGGCCR 2 cut(s) 453, 537
AcsI RAATTY 7 cut(s) 186, 358, 442, 526, 610, 733, 807
AcuI CTGAAG 1 cut(s) 1070
AfaI GTAC 1 cut(s) 1019
AfiI CCNNNNNNNGG 3 cut(s) 199, 200, 1170
AflII CTTAAG 1 cut(s) 893
AgsI TTSAA 3 cut(s) 738, 814, 977
AjnI CCWGG 2 cut(s) 886, 1307
AluBI AGCT 6 cut(s) 462, 546, 671, 884, 958, 1142
AluI AGCT 6 cut(s) 462, 546, 671, 884, 958, 1142
Alw21I GWGCWC 1 cut(s) 772
AlwI GGATC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 3 cut(s) 453, 537, 889
ApeKI GCWGC 2 cut(s) 44, 68
ApoI RAATTY 7 cut(s) 186, 358, 442, 526, 610, 733, 807
AspLEI GCGC 2 cut(s) 699, 917
AspS9I GGNCC 1 cut(s) 1222
AsuC2I CCSGG 4 cut(s) 701, 702, 1044, 1263
AsuHPI GGTGA 2 cut(s) 1076, 1192
AsuII TTCGAA 1 cut(s) 953
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 1 cut(s) 1222
BaeGI GKGCMC 1 cut(s) 707
BalI TGGCCA 2 cut(s) 455, 539
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 55, 56
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 2 cut(s) 888, 1309
BcnI CCSGG 4 cut(s) 701, 702, 1044, 1263
BfaI CTAG 3 cut(s) 41, 729, 1205
BfrI CTTAAG 1 cut(s) 893
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 45, 69
BlsI GCNGC 2 cut(s) 46, 70
Bme1390I CCNGG 6 cut(s) 701, 702, 888, 1044, 1263, 1309
Bme18I GGWCC 1 cut(s) 1222
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 1222
BmiI GGNNCC 5 cut(s) 1009, 1223, 1224, 1267, 1314
BmrFI CCNGG 6 cut(s) 701, 702, 888, 1044, 1263, 1309
BmsI GCATC 3 cut(s) 111, 157, 1288
BpmI CTGGAG 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 953
BpuMI CCSGG 4 cut(s) 701, 702, 1044, 1263
Bsa29I ATCGAT 1 cut(s) 776
BsaJI CCNNGG 2 cut(s) 700, 1308
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 200, 1170
Bse1I ACTGG 2 cut(s) 60, 98
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 888, 1309
BseCI ATCGAT 1 cut(s) 776
BseDI CCNNGG 2 cut(s) 700, 1308
BseGI GGATG 3 cut(s) 148, 419, 1179
BseLI CCNNNNNNNGG 3 cut(s) 199, 200, 1170
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 49, 831
BseNI ACTGG 2 cut(s) 60, 98
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 2 cut(s) 55, 56
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 3 cut(s) 455, 539, 891
BshVI ATCGAT 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 3 cut(s) 701, 1043, 1263
BslFI GGGAC 2 cut(s) 1059, 1235
BslI CCNNNNNNNGG 3 cut(s) 199, 200, 1170
BsmFI GGGAC 2 cut(s) 1059, 1235
BsnI GGCC 3 cut(s) 455, 539, 891
BsoBI CYCGRG 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 953
Bsp1286I GDGCHC 2 cut(s) 707, 772
Bsp143I GATC 2 cut(s) 128, 777
BspACI CCGC 1 cut(s) 47
BspANI GGCC 3 cut(s) 455, 539, 891
BspCNI CTCAG 2 cut(s) 48, 832
BspDI ATCGAT 1 cut(s) 776
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 5 cut(s) 1009, 1223, 1224, 1267, 1314
BspPI GGATC 1 cut(s) 772
BspT104I TTCGAA 1 cut(s) 953
BspTI CTTAAG 1 cut(s) 893
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 2 cut(s) 700, 1308
BssMI GATC 2 cut(s) 128, 777
Bst2UI CCWGG 2 cut(s) 888, 1309
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 867
BstAFI CTTAAG 1 cut(s) 893
BstAPI GCANNNNNTGC 2 cut(s) 50, 65
BstBI TTCGAA 1 cut(s) 953
BstDEI CTNAG 4 cut(s) 35, 667, 792, 840
BstF5I GGATG 3 cut(s) 148, 419, 1179
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 2 cut(s) 699, 917
BstKTI GATC 2 cut(s) 131, 780
BstMBI GATC 2 cut(s) 128, 777
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 2 cut(s) 888, 1309
BstNSI RCATGY 2 cut(s) 697, 1024
BstSCI CCNGG 6 cut(s) 699, 700, 886, 1042, 1261, 1307
BstSLI GKGCMC 1 cut(s) 707
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 55, 56
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 776
BsuRI GGCC 3 cut(s) 455, 539, 891
BsuTUI ATCGAT 1 cut(s) 776
BtsCI GGATG 3 cut(s) 148, 419, 1179
BtsIMutI CAGTG 4 cut(s) 53, 142, 831, 1293
CfoI GCGC 2 cut(s) 699, 917
Cfr13I GGNCC 1 cut(s) 1222
Cfr9I CCCGGG 1 cut(s) 700
ClaI ATCGAT 1 cut(s) 776
Csp6I GTAC 1 cut(s) 1018
CviAII CATG 4 cut(s) 694, 1021, 1121, 1332
CviQI GTAC 1 cut(s) 1018
DdeI CTNAG 4 cut(s) 35, 667, 792, 840
DpnI GATC 2 cut(s) 130, 779
DpnII GATC 2 cut(s) 128, 777
EaeI YGGCCR 2 cut(s) 453, 537
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 1222
Eco57I CTGAAG 1 cut(s) 1070
Eco88I CYCGRG 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 1222
EcoRII CCWGG 2 cut(s) 886, 1307
FaeI CATG 4 cut(s) 697, 1024, 1124, 1335
FaqI GGGAC 2 cut(s) 1059, 1235
FatI CATG 4 cut(s) 693, 1020, 1120, 1331
Fnu4HI GCNGC 2 cut(s) 45, 69
FokI GGATG 3 cut(s) 135, 406, 1186
Fsp4HI GCNGC 2 cut(s) 45, 69
FspBI CTAG 3 cut(s) 41, 729, 1205
GlaI GCGC 2 cut(s) 698, 916
GluI GCNGC 2 cut(s) 45, 69
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 3 cut(s) 455, 539, 891
HapII CCGG 3 cut(s) 701, 1043, 1263
HhaI GCGC 2 cut(s) 699, 917
Hin1II CATG 4 cut(s) 697, 1024, 1124, 1335
Hin6I GCGC 2 cut(s) 697, 915
HinP1I GCGC 2 cut(s) 697, 915
HincII GTYRAC 1 cut(s) 647
HindII GTYRAC 1 cut(s) 647
HindIII AAGCTT 2 cut(s) 956, 1140
HinfI GANTC 2 cut(s) 155, 929
HpaII CCGG 3 cut(s) 701, 1043, 1263
HphI GGTGA 2 cut(s) 1076, 1192
Hpy166II GTNNAC 3 cut(s) 140, 214, 647
Hpy188I TCNGA 8 cut(s) 256, 340, 424, 508, 592, 640, 841, 1216
Hpy188III TCNNGA 3 cut(s) 152, 685, 1205
Hpy8I GTNNAC 3 cut(s) 140, 214, 647
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 6 cut(s) 682, 793, 998, 1055, 1171, 1249
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 8 cut(s) 238, 322, 406, 490, 574, 625, 972, 1254
HpyCH4V TGCA 6 cut(s) 53, 148, 199, 1024, 1124, 1331
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 4 cut(s) 35, 667, 792, 840
HpySE526I ACGT 8 cut(s) 238, 322, 406, 490, 574, 625, 972, 1254
Hsp92II CATG 4 cut(s) 697, 1024, 1124, 1335
HspAI GCGC 2 cut(s) 697, 915
KflI GGGWCCC 1 cut(s) 1222
Kzo9I GATC 2 cut(s) 128, 777
LmnI GCTCC 2 cut(s) 889, 1007
Lsp1109I GCAGC 2 cut(s) 55, 56
LweI GCATC 3 cut(s) 111, 157, 1288
MaeI CTAG 3 cut(s) 41, 729, 1205
MaeII ACGT 8 cut(s) 238, 322, 406, 490, 574, 625, 972, 1254
MaeIII GTNAC 2 cut(s) 1064, 1189
MalI GATC 2 cut(s) 130, 779
MboI GATC 2 cut(s) 128, 777
MboII GAAGA 6 cut(s) 179, 670, 673, 884, 1013, 1063
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 707, 772
MlsI TGGCCA 2 cut(s) 455, 539
MluCI AATT 9 cut(s) 186, 358, 442, 526, 610, 722, 733, 807, 855
MluNI TGGCCA 2 cut(s) 455, 539
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 447, 1038
Mox20I TGGCCA 2 cut(s) 455, 539
MscI TGGCCA 2 cut(s) 455, 539
MseI TTAA 3 cut(s) 858, 894, 1257
MslI CAYNNNNRTG 3 cut(s) 119, 710, 1216
Msp20I TGGCCA 2 cut(s) 455, 539
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 893
MspI CCGG 3 cut(s) 701, 1043, 1263
MspR9I CCNGG 6 cut(s) 701, 702, 888, 1044, 1263, 1309
MvaI CCWGG 2 cut(s) 888, 1309
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 4 cut(s) 701, 702, 1044, 1263
NdeII GATC 2 cut(s) 128, 777
NlaIII CATG 4 cut(s) 697, 1024, 1124, 1335
NlaIV GGNNCC 5 cut(s) 1009, 1223, 1224, 1267, 1314
NmuCI GTSAC 1 cut(s) 1064
NspI RCATGY 2 cut(s) 697, 1024
NspV TTCGAA 1 cut(s) 953
PceI AGGCCT 1 cut(s) 891
PfeI GAWTC 1 cut(s) 929
PflFI GACNNNGTC 1 cut(s) 1070
PkrI GCNGC 2 cut(s) 46, 70
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 1222
PsiI TTATAA 5 cut(s) 231, 315, 399, 483, 567
Psp1406I AACGTT 2 cut(s) 972, 1254
Psp5II RGGWCCY 1 cut(s) 1222
Psp6I CCWGG 2 cut(s) 886, 1307
PspGI CCWGG 2 cut(s) 886, 1307
PspN4I GGNNCC 5 cut(s) 1009, 1223, 1224, 1267, 1314
PspPI GGNCC 1 cut(s) 1222
PspPPI RGGWCCY 1 cut(s) 1222
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 1070
RsaI GTAC 1 cut(s) 1019
RsaNI GTAC 1 cut(s) 1018
RseI CAYNNNNRTG 3 cut(s) 119, 710, 1216
SaqAI TTAA 3 cut(s) 858, 894, 1257
SatI GCNGC 2 cut(s) 45, 69
Sau3AI GATC 2 cut(s) 128, 777
Sau96I GGNCC 1 cut(s) 1222
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 6 cut(s) 701, 702, 888, 1044, 1263, 1309
SduI GDGCHC 2 cut(s) 707, 772
SfaNI GCATC 3 cut(s) 111, 157, 1288
SfuI TTCGAA 1 cut(s) 953
SinI GGWCC 1 cut(s) 1222
SmaI CCCGGG 1 cut(s) 702
SmiMI CAYNNNNRTG 3 cut(s) 119, 710, 1216
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SrfI GCCCGGGC 1 cut(s) 702
Sse9I AATT 9 cut(s) 186, 358, 442, 526, 610, 722, 733, 807, 855
SseBI AGGCCT 1 cut(s) 891
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 911
SspMI CTAG 3 cut(s) 41, 729, 1205
StuI AGGCCT 1 cut(s) 891
StyD4I CCNGG 6 cut(s) 699, 700, 886, 1042, 1261, 1307
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 8 cut(s) 241, 325, 409, 493, 577, 628, 975, 1257
TaqI TCGA 4 cut(s) 684, 776, 870, 953
TasI AATT 9 cut(s) 186, 358, 442, 526, 610, 722, 733, 807, 855
TatI WGTACW 1 cut(s) 1017
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 3 cut(s) 858, 894, 1257
Tru9I TTAA 3 cut(s) 858, 894, 1257
TscAI CASTG 4 cut(s) 60, 142, 831, 1300
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 2 cut(s) 44, 68
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 3 cut(s) 180, 728, 1190
TspGWI ACGGA 2 cut(s) 91, 1004
TspMI CCCGGG 1 cut(s) 700
TspRI CASTG 4 cut(s) 60, 142, 831, 1300
Tth111I GACNNNGTC 1 cut(s) 1070
Vha464I CTTAAG 1 cut(s) 893
VpaK11BI GGWCC 1 cut(s) 1222
XapI RAATTY 7 cut(s) 186, 358, 442, 526, 610, 733, 807
XbaI TCTAGA 1 cut(s) 1204
XceI RCATGY 2 cut(s) 697, 1024
XmaI CCCGGG 1 cut(s) 700
XspI CTAG 3 cut(s) 41, 729, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.