Prupe.1G453500_v2.0.a1

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
38123180 .. 38125259
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G453500.1

Sequence Viewer

Length: 1095 bp
ATGGGTTTTCGTCTTCCTCACATCTTTGCTTTTCTCACTCTCACACTGGTGGCAAGCCATGCTGCTCTACCACCTCAGCTTTACTGGAACTCTGTCTTGCCAAACACTCAAATGCCAAAATCCATCAGTGAACTTCTCCAGCCTGACTTTGCTGAAGAAAAGGGCACCACTGTCGGCGTTGGGAAGGGAGGGGTGAATGTCCAAGCCGGGAAAGGGAAGCCAGGCGGCGGCACCAACGTGAATGTCGGAGGCAAAGGCGGTGGTGTCGGGGTGACCACCGGGAAGCCTGGAGGAGGAACCAACGTTGGTGTTGGCAAAGGAGGAGTGTCTGTGAACACAGGGCACAAGGGAAAGCCTGTGTATGTTGGAGTGAAGCCAGGACCAAACCCTTTCAACTACGTATATGCAGCCACTGAGACTCAGCTACATGGAAATCGAAACGCAGCTATTTTCTTCTTGGAGAAGGACATACGTCCTGGCACAAGCATGACCTTGACGTTCTCTGGAAACTCAAACACCGCGGCTTTCGTGCCACGCACAACAGCGGATTCCATCCCCTTCTCGTCCAACAAGCTGCCAGAGATTTTCAGCCAGTTTTCGGTGAAGCCGGAGTCTGTGGAAGCTGATATAATCAAGGGGACAATTGAAGAGTGTGAGAGCTCAGGCATCAGAGGAGAGGAGAAGTATTGTGCTACCTCTTTGGAGTCAATGGTTGACTTCAGCACTTCCAAGCTTGGAGGAAACATTCAAGCAATCTCAACAGAGGCAGAGAAAGGAGCCACGTTGCAGAAGTACACTATTACCCCTGGAGTGAAGAAGCTGGCAGCTGGTAAATCAGTTGTGTGCCACAAGCAGACCTATCCTTACGCTGTTTTCTACTGCCATGCAACAAAAACAACAAGAGCTTATGTGGTGCCTCTGAAGGGTGCTGATGGGTTGGAGGCTAAAGCAGTAGCAGTTTGCCACACAGACACATCAGAGTGGAACCCAAAGCATTTGGCCTTCCAAGTGCTAAAAGTTAAGCCAGGAACCGTTGCCGTCTGCCATTTCCTTCCGAAAGATCACATTGTCTGGGTTCCAAAGAAATCTACATGA

Protein Analysis

365

Amino Acids

38.38

Weight (kDa)

9.3

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 164, 230, 913
AccII CGCG 1 cut(s) 521
AciI CCGC 6 cut(s) 225, 228, 258, 519, 521, 545
AclI AACGTT 1 cut(s) 303
AcuI CTGAAG 3 cut(s) 174, 703, 941
AfaI GTAC 1 cut(s) 794
AfiI CCNNNNNNNGG 5 cut(s) 213, 227, 293, 598, 923
AgsI TTSAA 3 cut(s) 394, 647, 749
AjnI CCWGG 6 cut(s) 220, 286, 376, 475, 805, 1024
AleI CACNNNNGTG 2 cut(s) 47, 236
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 999
ApeKI GCWGC 5 cut(s) 62, 407, 443, 574, 824
AspS9I GGNCC 1 cut(s) 380
AsuC2I CCSGG 2 cut(s) 208, 280
AsuHPI GGTGA 3 cut(s) 205, 283, 613
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 2 cut(s) 167, 345
BanI GGYRCC 3 cut(s) 164, 230, 913
BanII GRGCYC 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 662
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 49, 419, 455, 561, 836
BccI CCATC 3 cut(s) 131, 560, 926
BceAI ACGGC 1 cut(s) 1022
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 6 cut(s) 222, 288, 378, 477, 807, 1026
BcnI CCSGG 2 cut(s) 208, 280
BcoDI GTCTC 1 cut(s) 410
BisI GCNGC 8 cut(s) 63, 226, 229, 408, 444, 522, 575, 825
BlsI GCNGC 8 cut(s) 64, 227, 230, 409, 445, 523, 576, 826
Bme1390I CCNGG 8 cut(s) 208, 222, 280, 288, 378, 477, 807, 1026
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 8 cut(s) 166, 232, 298, 778, 915, 986, 1030, 1077
BmrFI CCNGG 8 cut(s) 208, 222, 280, 288, 378, 477, 807, 1026
BmsI GCATC 1 cut(s) 675
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 5
BpmI CTGGAG 3 cut(s) 122, 309, 828
Bpu10I CCTNAGC 2 cut(s) 75, 661
BpuMI CCSGG 2 cut(s) 208, 280
BsaAI YACGTR 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 519, 805
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 227, 293, 598, 923
Bse1I ACTGG 3 cut(s) 51, 89, 592
BseBI CCWGG 6 cut(s) 222, 288, 378, 477, 807, 1026
BseDI CCNNGG 2 cut(s) 519, 805
BseGI GGATG 1 cut(s) 552
BseLI CCNNNNNNNGG 5 cut(s) 213, 227, 293, 598, 923
BseMII CTCAG 4 cut(s) 89, 405, 434, 675
BseNI ACTGG 3 cut(s) 51, 89, 592
BseRI GAGGAG 4 cut(s) 306, 336, 687, 692
BseSI GKGCMC 2 cut(s) 167, 345
BseXI GCAGC 5 cut(s) 49, 419, 455, 561, 836
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 1001
BshNI GGYRCC 3 cut(s) 164, 230, 913
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 3 cut(s) 207, 279, 608
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 5 cut(s) 213, 227, 293, 598, 923
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 1 cut(s) 1001
Bsp1286I GDGCHC 3 cut(s) 167, 345, 662
Bsp143I GATC 1 cut(s) 1060
BspACI CCGC 6 cut(s) 225, 228, 258, 519, 521, 545
BspANI GGCC 1 cut(s) 1001
BspCNI CTCAG 4 cut(s) 88, 406, 433, 674
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 8 cut(s) 166, 232, 298, 778, 915, 986, 1030, 1077
BspT107I GGYRCC 3 cut(s) 164, 230, 913
BsrI ACTGG 3 cut(s) 51, 89, 592
BssECI CCNNGG 2 cut(s) 519, 805
BssMI GATC 1 cut(s) 1060
Bst2UI CCWGG 6 cut(s) 222, 288, 378, 477, 807, 1026
Bst4CI ACNGT 2 cut(s) 172, 1033
Bst6I CTCTTC 1 cut(s) 642
BstAPI GCANNNNNTGC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 55, 822
BstDEI CTNAG 4 cut(s) 75, 414, 420, 661
BstDSI CCRYGG 1 cut(s) 519
BstEII GGTNACC 1 cut(s) 271
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 552
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 1 cut(s) 1063
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 1060
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 6 cut(s) 222, 288, 378, 477, 807, 1026
BstPAI GACNNNNGTC 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 271
BstSCI CCNGG 8 cut(s) 206, 220, 278, 286, 376, 475, 805, 1024
BstSLI GKGCMC 2 cut(s) 167, 345
BstSNI TACGTA 1 cut(s) 400
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 5 cut(s) 49, 419, 455, 561, 836
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 1001
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 552
BtsIMutI CAGTG 4 cut(s) 44, 133, 168, 411
Cac8I GCNNGC 2 cut(s) 55, 822
CaiI CAGNNNCTG 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 380
Cfr42I CCGCGG 1 cut(s) 522
Csp6I GTAC 1 cut(s) 793
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 5 cut(s) 59, 428, 487, 884, 1092
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 4 cut(s) 75, 414, 420, 661
DpnI GATC 1 cut(s) 1062
DpnII GATC 1 cut(s) 1060
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Ecl136II GAGCTC 1 cut(s) 660
Eco105I TACGTA 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 660
Eco57I CTGAAG 3 cut(s) 174, 703, 941
Eco91I GGTNACC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 660
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 271
EcoRII CCWGG 6 cut(s) 220, 286, 376, 475, 805, 1024
EcoT38I GRGCYC 1 cut(s) 662
FaeI CATG 5 cut(s) 62, 431, 490, 887, 1095
FaqI GGGAC 1 cut(s) 652
FatI CATG 5 cut(s) 58, 427, 486, 883, 1091
Fnu4HI GCNGC 8 cut(s) 63, 226, 229, 408, 444, 522, 575, 825
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 662
Fsp4HI GCNGC 8 cut(s) 63, 226, 229, 408, 444, 522, 575, 825
GluI GCNGC 8 cut(s) 63, 226, 229, 408, 444, 522, 575, 825
GsuI CTGGAG 3 cut(s) 122, 309, 828
HaeIII GGCC 1 cut(s) 1001
HapII CCGG 3 cut(s) 207, 279, 608
Hin1II CATG 5 cut(s) 62, 431, 490, 887, 1095
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 4 cut(s) 418, 548, 611, 704
HpaII CCGG 3 cut(s) 207, 279, 608
HphI GGTGA 3 cut(s) 205, 283, 613
Hpy166II GTNNAC 4 cut(s) 131, 334, 715, 795
Hpy188I TCNGA 5 cut(s) 248, 671, 921, 979, 1056
Hpy188III TCNNGA 1 cut(s) 504
Hpy8I GTNNAC 4 cut(s) 131, 334, 715, 795
HpyAV CCTTC 6 cut(s) 178, 457, 568, 916, 1012, 1061
HpyCH4III ACNGT 2 cut(s) 172, 1033
HpyCH4IV ACGT 6 cut(s) 237, 303, 399, 472, 497, 782
HpyCH4V TGCA 3 cut(s) 407, 787, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 4 cut(s) 75, 414, 420, 661
HpySE526I ACGT 6 cut(s) 237, 303, 399, 472, 497, 782
Hsp92II CATG 5 cut(s) 62, 431, 490, 887, 1095
KspI CCGCGG 1 cut(s) 522
Kzo9I GATC 1 cut(s) 1060
LmnI GCTCC 1 cut(s) 776
Lsp1109I GCAGC 5 cut(s) 49, 419, 455, 561, 836
LweI GCATC 1 cut(s) 675
MaeII ACGT 6 cut(s) 237, 303, 399, 472, 497, 782
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 1062
MboI GATC 1 cut(s) 1060
MboII GAAGA 5 cut(s) 5, 167, 445, 659, 826
MfeI CAATTG 1 cut(s) 642
MhlI GDGCHC 3 cut(s) 167, 345, 662
MluCI AATT 1 cut(s) 642
MlyI GAGTC 3 cut(s) 412, 620, 713
MmeI TCCRAC 4 cut(s) 226, 346, 591, 918
MseI TTAA 1 cut(s) 1020
MslI CAYNNNNRTG 5 cut(s) 47, 110, 236, 485, 979
MspA1I CMGCKG 3 cut(s) 521, 545, 827
MspI CCGG 3 cut(s) 207, 279, 608
MspR9I CCNGG 8 cut(s) 208, 222, 280, 288, 378, 477, 807, 1026
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 6 cut(s) 222, 288, 378, 477, 807, 1026
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 2 cut(s) 208, 280
NdeII GATC 1 cut(s) 1060
NlaIII CATG 5 cut(s) 62, 431, 490, 887, 1095
NlaIV GGNNCC 8 cut(s) 166, 232, 298, 778, 915, 986, 1030, 1077
NmuCI GTSAC 1 cut(s) 271
OliI CACNNNNGTG 2 cut(s) 47, 236
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 8 cut(s) 64, 227, 230, 409, 445, 523, 576, 826
PleI GAGTC 3 cut(s) 412, 619, 712
PpsI GAGTC 3 cut(s) 412, 619, 712
Ppu21I YACGTR 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 662
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 6 cut(s) 220, 286, 376, 475, 805, 1024
PspEI GGTNACC 1 cut(s) 271
PspGI CCWGG 6 cut(s) 220, 286, 376, 475, 805, 1024
PspN4I GGNNCC 8 cut(s) 166, 232, 298, 778, 915, 986, 1030, 1077
PspPI GGNCC 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
RseI CAYNNNNRTG 5 cut(s) 47, 110, 236, 485, 979
SacI GAGCTC 1 cut(s) 662
SacII CCGCGG 1 cut(s) 522
SaqAI TTAA 1 cut(s) 1020
SatI GCNGC 8 cut(s) 63, 226, 229, 408, 444, 522, 575, 825
Sau3AI GATC 1 cut(s) 1060
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 3 cut(s) 412, 620, 713
ScrFI CCNGG 8 cut(s) 208, 222, 280, 288, 378, 477, 807, 1026
SduI GDGCHC 3 cut(s) 167, 345, 662
SfaNI GCATC 1 cut(s) 675
Sfr303I CCGCGG 1 cut(s) 522
SgrBI CCGCGG 1 cut(s) 522
SinI GGWCC 1 cut(s) 380
SmiMI CAYNNNNRTG 5 cut(s) 47, 110, 236, 485, 979
SnaBI TACGTA 1 cut(s) 400
Sse9I AATT 1 cut(s) 642
SsiI CCGC 6 cut(s) 225, 228, 258, 519, 521, 545
SstI GAGCTC 1 cut(s) 662
StyD4I CCNGG 8 cut(s) 206, 220, 278, 286, 376, 475, 805, 1024
TaaI ACNGT 2 cut(s) 172, 1033
TaiI ACGT 6 cut(s) 240, 306, 402, 475, 500, 785
TaqI TCGA 1 cut(s) 436
TasI AATT 1 cut(s) 642
TatI WGTACW 1 cut(s) 792
TauI GCSGC 3 cut(s) 228, 231, 524
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TscAI CASTG 4 cut(s) 51, 133, 175, 418
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 5 cut(s) 62, 407, 443, 574, 824
Tsp45I GTSAC 1 cut(s) 271
TspRI CASTG 4 cut(s) 51, 133, 175, 418
VpaK11BI GGWCC 1 cut(s) 380
XagI CCTNNNNNAGG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.