Prupe.1G475300_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39517635 .. 39526255
8621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475300.1

Sequence Viewer

Length: 1041 bp
ATGGGGTTTCATCCCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCGGTTGCACAGGCAAACAATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACAAATGACGTTGGCAAACCTGAAACTTTCCCATTGGGCAATCAAAATTACTCCAGTCAAAAAAATTATGGAACAGGCAATAAACGTTACTGCAGTCAAAAAAGGTATGGAAGAGGCAAGAAACGTTACTGCGATCAAAAAAAGTATGGAAGAGGTGCTTCTCCATCTGACAATCAACTACTCCATTATAAAGACTTAGCTATTTTCTTCTTGGAGAAGGACATGCGCCCTGGCACAACAATGAAGTTCCAATTCTCTAGAAATTCAAACACGGCTACTTTCTTGCCACGAGAAAGCGCTCAATCGATCCCCTTCTCCTCTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCCGGCCTTAAGGGAGAGGAAATATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGCCAGTGACAAAGTCGTTGTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACATACAGCAGCTTATGTTCTCTTCCTGAAAGGCGATGATGGGGAGAAGGTTAAAGCAGTAACCATCTGTCATCTAGACACATCAGAATGGAACCCAGAGCATATGTCCTTCCAAATCGTCAACGTTAAGCCCGGAACCATTCCCATCTGCCATTTCATTTCCACTGATGCTATTGCCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

347

Amino Acids

38.67

Weight (kDa)

8.74

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AciI CCGC 1 cut(s) 47
AclI AACGTT 4 cut(s) 262, 301, 678, 960
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 2 cut(s) 439, 513
AcuI CTGAAG 1 cut(s) 776
AfeI AGCGCT 1 cut(s) 475
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 3 cut(s) 444, 520, 683
AjnI CCWGG 2 cut(s) 406, 1013
AluBI AGCT 4 cut(s) 377, 590, 664, 848
AluI AGCT 4 cut(s) 377, 590, 664, 848
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 475
AoxI GGCC 2 cut(s) 595, 765
ApeKI GCWGC 3 cut(s) 44, 68, 845
ApoI RAATTY 2 cut(s) 439, 513
AspLEI GCGC 3 cut(s) 405, 476, 623
AsuC2I CCSGG 3 cut(s) 594, 750, 969
AsuII TTCGAA 1 cut(s) 659
BalI TGGCCA 1 cut(s) 767
BauI CACGAG 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 55, 56, 857
BccI CCATC 4 cut(s) 349, 869, 908, 989
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 408, 1015
BcnI CCSGG 3 cut(s) 594, 750, 969
BfaI CTAG 3 cut(s) 41, 435, 911
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 599
BglII AGATCT 1 cut(s) 128
BisI GCNGC 3 cut(s) 45, 69, 846
BlsI GCNGC 3 cut(s) 46, 70, 847
Bme1390I CCNGG 5 cut(s) 408, 594, 750, 969, 1015
BmiI GGNNCC 4 cut(s) 715, 929, 973, 1020
BmrFI CCNGG 5 cut(s) 408, 594, 750, 969, 1015
BmsI GCATC 3 cut(s) 111, 157, 994
BpmI CTGGAG 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 3 cut(s) 594, 750, 969
Bsa29I ATCGAT 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 406, 1014
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 3 cut(s) 98, 231, 768
BseBI CCWGG 2 cut(s) 408, 1015
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 406, 1014
BseGI GGATG 2 cut(s) 10, 148
BseMII CTCAG 2 cut(s) 49, 537
BseNI ACTGG 3 cut(s) 98, 231, 768
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 3 cut(s) 55, 56, 857
BshFI GGCC 2 cut(s) 597, 767
BshVI ATCGAT 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 594, 749, 969
BslFI GGGAC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 765
BsnI GGCC 2 cut(s) 597, 767
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 128, 310, 483
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 597, 767
BspCNI CTCAG 2 cut(s) 48, 538
BspDI ATCGAT 1 cut(s) 482
BspLI GGNNCC 4 cut(s) 715, 929, 973, 1020
BspMAI CTGCAG 1 cut(s) 272
BspPI GGATC 1 cut(s) 478
BspT104I TTCGAA 1 cut(s) 659
BspTI CTTAAG 1 cut(s) 599
BsrI ACTGG 3 cut(s) 98, 231, 768
BssECI CCNNGG 2 cut(s) 406, 1014
BssMI GATC 3 cut(s) 128, 310, 483
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 408, 1015
Bst6I CTCTTC 4 cut(s) 283, 322, 573, 863
BstAFI CTTAAG 1 cut(s) 599
BstAPI GCANNNNNTGC 2 cut(s) 50, 65
BstBI TTCGAA 1 cut(s) 659
BstDEI CTNAG 3 cut(s) 35, 373, 546
BstF5I GGATG 2 cut(s) 10, 148
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 3 cut(s) 405, 476, 623
BstKTI GATC 3 cut(s) 131, 313, 486
BstMBI GATC 3 cut(s) 128, 310, 483
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 2 cut(s) 408, 1015
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 5 cut(s) 406, 592, 748, 967, 1013
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 55, 56, 857
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 2 cut(s) 597, 767
BsuTUI ATCGAT 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 885
BtsCI GGATG 2 cut(s) 10, 148
BtsIMutI CAGTG 4 cut(s) 142, 537, 775, 999
CfoI GCGC 3 cut(s) 405, 476, 623
ClaI ATCGAT 1 cut(s) 482
CviAII CATG 5 cut(s) 400, 721, 727, 827, 1038
DdeI CTNAG 3 cut(s) 35, 373, 546
DpnI GATC 3 cut(s) 130, 312, 485
DpnII GATC 3 cut(s) 128, 310, 483
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 4 cut(s) 283, 322, 573, 863
EarI CTCTTC 4 cut(s) 283, 322, 573, 863
Eco47III AGCGCT 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 406, 1013
FaeI CATG 5 cut(s) 403, 724, 730, 830, 1041
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 1 cut(s) 765
FatI CATG 5 cut(s) 399, 720, 726, 826, 1037
FauNDI CATATG 1 cut(s) 939
Fnu4HI GCNGC 3 cut(s) 45, 69, 846
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 45, 69, 846
FspBI CTAG 3 cut(s) 41, 435, 911
GlaI GCGC 3 cut(s) 404, 475, 622
GluI GCNGC 3 cut(s) 45, 69, 846
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 2 cut(s) 597, 767
HapII CCGG 3 cut(s) 594, 749, 969
HhaI GCGC 3 cut(s) 405, 476, 623
Hin1II CATG 5 cut(s) 403, 724, 730, 830, 1041
Hin6I GCGC 3 cut(s) 403, 474, 621
HinP1I GCGC 3 cut(s) 403, 474, 621
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 2 cut(s) 155, 635
HpaII CCGG 3 cut(s) 594, 749, 969
Hpy166II GTNNAC 2 cut(s) 140, 958
Hpy188I TCNGA 4 cut(s) 346, 547, 922, 1023
Hpy188III TCNNGA 5 cut(s) 152, 435, 691, 862, 911
Hpy8I GTNNAC 2 cut(s) 140, 958
Hpy99I CGWCG 1 cut(s) 697
HpyAV CCTTC 4 cut(s) 388, 499, 877, 955
HpyCH4IV ACGT 5 cut(s) 186, 262, 301, 678, 960
HpyCH4V TGCA 6 cut(s) 53, 148, 270, 730, 830, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 3 cut(s) 35, 373, 546
HpySE526I ACGT 5 cut(s) 186, 262, 301, 678, 960
Hsp92II CATG 5 cut(s) 403, 724, 730, 830, 1041
HspAI GCGC 3 cut(s) 403, 474, 621
Kzo9I GATC 3 cut(s) 128, 310, 483
LmnI GCTCC 2 cut(s) 595, 713
Lsp1109I GCAGC 3 cut(s) 55, 56, 857
LweI GCATC 3 cut(s) 111, 157, 994
MaeI CTAG 3 cut(s) 41, 435, 911
MaeII ACGT 5 cut(s) 186, 262, 301, 678, 960
MaeIII GTNAC 4 cut(s) 263, 302, 770, 895
MalI GATC 3 cut(s) 130, 312, 485
MboI GATC 3 cut(s) 128, 310, 483
MboII GAAGA 7 cut(s) 179, 300, 339, 376, 590, 769, 850
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 6 cut(s) 223, 241, 428, 439, 513, 561
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 7 cut(s) 93, 284, 323, 505, 541, 601, 691
Mox20I TGGCCA 1 cut(s) 767
MscI TGGCCA 1 cut(s) 767
MseI TTAA 4 cut(s) 564, 600, 888, 963
MslI CAYNNNNRTG 4 cut(s) 119, 416, 725, 922
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 3 cut(s) 594, 749, 969
MspR9I CCNGG 5 cut(s) 408, 594, 750, 969, 1015
MvaI CCWGG 2 cut(s) 408, 1015
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 3 cut(s) 594, 750, 969
NdeI CATATG 1 cut(s) 939
NdeII GATC 3 cut(s) 128, 310, 483
NlaIII CATG 5 cut(s) 403, 724, 730, 830, 1041
NlaIV GGNNCC 4 cut(s) 715, 929, 973, 1020
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 659
PfeI GAWTC 1 cut(s) 635
PflFI GACNNNGTC 1 cut(s) 776
PkrI GCNGC 3 cut(s) 46, 70, 847
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PsiI TTATAA 1 cut(s) 366
Psp1406I AACGTT 4 cut(s) 262, 301, 678, 960
Psp6I CCWGG 2 cut(s) 406, 1013
PspGI CCWGG 2 cut(s) 406, 1013
PspN4I GGNNCC 4 cut(s) 715, 929, 973, 1020
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 776
RseI CAYNNNNRTG 4 cut(s) 119, 416, 725, 922
SaqAI TTAA 4 cut(s) 564, 600, 888, 963
SatI GCNGC 3 cut(s) 45, 69, 846
Sau3AI GATC 3 cut(s) 128, 310, 483
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 5 cut(s) 408, 594, 750, 969, 1015
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 3 cut(s) 111, 157, 994
SfcI CTRYAG 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 659
SmiMI CAYNNNNRTG 4 cut(s) 119, 416, 725, 922
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 223, 241, 428, 439, 513, 561
SsiI CCGC 1 cut(s) 47
SspMI CTAG 3 cut(s) 41, 435, 911
StyD4I CCNGG 5 cut(s) 406, 592, 748, 967, 1013
TaiI ACGT 5 cut(s) 189, 265, 304, 681, 963
TaqI TCGA 4 cut(s) 482, 576, 659, 692
TasI AATT 6 cut(s) 223, 241, 428, 439, 513, 561
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 4 cut(s) 564, 600, 888, 963
Tru9I TTAA 4 cut(s) 564, 600, 888, 963
TscAI CASTG 4 cut(s) 142, 537, 775, 1006
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 3 cut(s) 44, 68, 845
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 3 cut(s) 180, 434, 982
TspGWI ACGGA 2 cut(s) 91, 710
TspRI CASTG 4 cut(s) 142, 537, 775, 1006
Tth111I GACNNNGTC 1 cut(s) 776
Vha464I CTTAAG 1 cut(s) 599
XapI RAATTY 2 cut(s) 439, 513
XbaI TCTAGA 2 cut(s) 434, 910
XceI RCATGY 1 cut(s) 403
XspI CTAG 3 cut(s) 41, 435, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.