Rh5CG374800

Dehydration-responsive protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
48384813 .. 48397366
12554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG374800.1

Sequence Viewer

Length: 330 bp
ATGGTCGCATTAGCACTGTTGGGAAGAAGCTATGCCTCTAATGATGTATCATGGGGTTCTTACTGGCAGTCAGCTTTCCCAAAAACTGCGATACCCAAAACCCTACAAGAACTTCTACATCCGGACAACTGGATCGAAGGGAAAAGTAGATACACTGGGTTCAGCAAGGACGATCTAAACATCAACACCTTGCTAGTTTCCGGATCTGCATTTCCAACTATTGGTAAAGATAGCTATAACGAGGCCGCCTCCGGAAAAATCCAAGTGGAGCCAAATGGTACCGGTATGGACTTTGTGAAAACACTAGATGGAACAATGATTAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

11.89

Weight (kDa)

5.25

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 221
AccIII TCCGGA 3 cut(s) 121, 200, 251
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 140, 211
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 221
AgeI ACCGGT 1 cut(s) 281
AluBI AGCT 3 cut(s) 30, 74, 234
AluI AGCT 3 cut(s) 30, 74, 234
AlwI GGATC 2 cut(s) 140, 211
Aor13HI TCCGGA 3 cut(s) 121, 200, 251
AoxI GGCC 1 cut(s) 243
AsiGI ACCGGT 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 278
BccI CCATC 1 cut(s) 302
BfaI CTAG 2 cut(s) 194, 305
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 270, 280
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaWI WCCGGW 4 cut(s) 121, 200, 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 68, 134, 160
BseAI TCCGGA 3 cut(s) 121, 200, 251
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 68, 134, 160
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 281
BsiSI CCGG 4 cut(s) 122, 201, 252, 282
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 245
Bsp13I TCCGGA 3 cut(s) 121, 200, 251
Bsp143I GATC 3 cut(s) 132, 172, 203
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 245
BspEI TCCGGA 3 cut(s) 121, 200, 251
BspLI GGNNCC 2 cut(s) 270, 280
BspPI GGATC 2 cut(s) 140, 211
BspT107I GGYRCC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 3 cut(s) 68, 134, 160
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 3 cut(s) 132, 172, 203
Bst4CI ACNGT 1 cut(s) 18
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 3 cut(s) 135, 175, 206
BstMBI GATC 3 cut(s) 132, 172, 203
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 14, 153
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 1 cut(s) 279
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 30, 74, 234, 245, 271
CviKI_1 RGCY 5 cut(s) 30, 74, 234, 245, 271
CviQI GTAC 1 cut(s) 279
DpnI GATC 3 cut(s) 134, 174, 205
DpnII GATC 3 cut(s) 132, 172, 203
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 33, 52, 237, 287
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 194, 305
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 245
HapII CCGG 4 cut(s) 122, 201, 252, 282
Hin1II CATG 1 cut(s) 54
HpaII CCGG 4 cut(s) 122, 201, 252, 282
Hpy188III TCNNGA 3 cut(s) 122, 201, 252
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 209
Hsp92II CATG 1 cut(s) 54
Kpn2I TCCGGA 3 cut(s) 121, 200, 251
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 132, 172, 203
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 7 cut(s) 49, 115, 135, 141, 214, 265, 295
MaeI CTAG 2 cut(s) 194, 305
MalI GATC 3 cut(s) 134, 174, 205
MboI GATC 3 cut(s) 132, 172, 203
MboII GAAGA 1 cut(s) 36
MflI RGATCY 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 3 cut(s) 46, 235, 259
MroI TCCGGA 3 cut(s) 121, 200, 251
MseI TTAA 1 cut(s) 321
MspI CCGG 4 cut(s) 122, 201, 252, 282
NdeII GATC 3 cut(s) 132, 172, 203
NlaIII CATG 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 270, 280
PflMI CCANNNNNTGG 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 270, 280
PsuI RGATCY 1 cut(s) 203
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 132, 172, 203
SetI ASST 4 cut(s) 32, 76, 191, 236
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 194, 305
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 21, 160
TspRI CASTG 2 cut(s) 21, 160
Van91I CCANNNNNTGG 1 cut(s) 221
XspI CTAG 2 cut(s) 194, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.