Prupe.1G475800_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39610452 .. 39612448
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475800.1

Sequence Viewer

Length: 1212 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTCTTCTCAGTCTAGCAGCAGTGGCACTGGCAAACCATGCTGCTCAACCAGCACCTCAACTTTACTGGAGCTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACAAATGACGTTGGCAAACCTGAAACTTTCCCATTGGGCAATCAACATTACTCCAGTCAAAAACATTATGGAGGCATACCTGAAACTTCCCCATTGGGCAATAAACATTACTCCAGTCAAAAACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATCAGCATTACTCCAGTCAAAGACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATAAACATTACTCCAGTCAAAAACATTATGGAAGAGGCAAACCTGAAACTTTCCCATTGGGCAATCAGCATTACTCCAGTCAAAAAAAGTATGGAAGAGGTGCTTCTCCATCCGACAATCAACAACTCCATTATAAAGACTTAGCTATTTTCTTCTTGGAGAAGGACATGCGCCCTGGCACAACAATGAAGTTCCAATTCCCTATAAATTCAAACACGGCTACTTTCTTGCCACGAGAAAGCGCTCAATCGATCCCCTTCTCCTCTAACAAACTGCCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGACCTTAAGGGAGAGGAAATATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATCCAAAACTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACATACAGCAGCTTATGCTCTCTCCCTGAAAGGCGATGATGGGGAGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGACCCAGAGCATATGTCCTTCCAAATCGTCAACGTTAAGCCCGGAACCATTCCCATCTGCCATTTCATTTCCACTGATGCTATTGCCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

404

Amino Acids

44.9

Weight (kDa)

8.34

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AarI CACCTGC 1 cut(s) 929
Acc36I ACCTGC 1 cut(s) 929
AclI AACGTT 2 cut(s) 849, 1131
AclWI GGATC 1 cut(s) 649
AcsI RAATTY 2 cut(s) 610, 684
AcuI CTGAAG 1 cut(s) 947
AfeI AGCGCT 1 cut(s) 646
AflII CTTAAG 1 cut(s) 770
AgsI TTSAA 3 cut(s) 615, 691, 854
AjnI CCWGG 2 cut(s) 577, 1184
AluBI AGCT 5 cut(s) 99, 548, 761, 835, 1019
AluI AGCT 5 cut(s) 99, 548, 761, 835, 1019
Alw21I GWGCWC 2 cut(s) 101, 179
AlwI GGATC 1 cut(s) 649
Aor51HI AGCGCT 1 cut(s) 646
ApeKI GCWGC 3 cut(s) 44, 68, 1016
ApoI RAATTY 2 cut(s) 610, 684
AspLEI GCGC 3 cut(s) 576, 647, 794
AspS9I GGNCC 1 cut(s) 1099
AsuC2I CCSGG 2 cut(s) 921, 1140
AsuHPI GGTGA 1 cut(s) 953
AsuII TTCGAA 1 cut(s) 830
AvaII GGWCC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 101
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 101, 179
BbvI GCAGC 3 cut(s) 55, 56, 1028
BccI CCATC 6 cut(s) 520, 905, 1040, 1079, 1086, 1160
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 579, 1186
BcnI CCSGG 2 cut(s) 921, 1140
BfaI CTAG 2 cut(s) 41, 1082
BfoI RGCGCY 1 cut(s) 648
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 929
BglII AGATCT 1 cut(s) 128
BisI GCNGC 3 cut(s) 45, 69, 1017
BlsI GCNGC 3 cut(s) 46, 70, 1018
Bme1390I CCNGG 4 cut(s) 579, 921, 1140, 1186
Bme18I GGWCC 1 cut(s) 1099
BmgT120I GGNCC 1 cut(s) 1099
BmiI GGNNCC 5 cut(s) 886, 1100, 1101, 1144, 1191
BmrFI CCNGG 4 cut(s) 579, 921, 1140, 1186
BmsI GCATC 3 cut(s) 111, 157, 1165
BpmI CTGGAG 7 cut(s) 115, 214, 274, 337, 400, 463, 747
Bpu14I TTCGAA 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 921, 1140
Bsa29I ATCGAT 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 577, 1185
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 7 cut(s) 60, 98, 231, 291, 354, 417, 480
BseBI CCWGG 2 cut(s) 579, 1186
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 2 cut(s) 577, 1185
BseGI GGATG 3 cut(s) 148, 512, 897
BseMII CTCAG 2 cut(s) 49, 708
BseNI ACTGG 7 cut(s) 60, 98, 231, 291, 354, 417, 480
BseRI GAGGAG 1 cut(s) 655
BseXI GCAGC 3 cut(s) 55, 56, 1028
BshVI ATCGAT 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 101, 179
BsiSI CCGG 2 cut(s) 920, 1140
BslFI GGGAC 2 cut(s) 936, 1112
BsmFI GGGAC 2 cut(s) 936, 1112
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 2 cut(s) 101, 179
Bsp143I GATC 2 cut(s) 128, 654
BspCNI CTCAG 2 cut(s) 48, 709
BspDI ATCGAT 1 cut(s) 653
BspLI GGNNCC 5 cut(s) 886, 1100, 1101, 1144, 1191
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 1 cut(s) 649
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 830
BspTI CTTAAG 1 cut(s) 770
BsrI ACTGG 7 cut(s) 60, 98, 231, 291, 354, 417, 480
BssECI CCNNGG 2 cut(s) 577, 1185
BssMI GATC 2 cut(s) 128, 654
BssSI CACGAG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 579, 1186
Bst6I CTCTTC 6 cut(s) 36, 304, 367, 430, 493, 744
BstAFI CTTAAG 1 cut(s) 770
BstAPI GCANNNNNTGC 2 cut(s) 65, 1022
BstBI TTCGAA 1 cut(s) 830
BstDEI CTNAG 3 cut(s) 35, 544, 717
BstF5I GGATG 3 cut(s) 148, 512, 897
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 3 cut(s) 576, 647, 794
BstKTI GATC 2 cut(s) 131, 657
BstMBI GATC 2 cut(s) 128, 654
BstMWI GCNNNNNNNGC 4 cut(s) 50, 65, 77, 1022
BstNI CCWGG 2 cut(s) 579, 1186
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 4 cut(s) 577, 919, 1138, 1184
BstV1I GCAGC 3 cut(s) 55, 56, 1028
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 653
BtgZI GCGATG 1 cut(s) 1056
BtsCI GGATG 3 cut(s) 148, 512, 897
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 5 cut(s) 53, 54, 142, 708, 1170
BveI ACCTGC 1 cut(s) 929
CfoI GCGC 3 cut(s) 576, 647, 794
Cfr13I GGNCC 1 cut(s) 1099
ClaI ATCGAT 1 cut(s) 653
CviAII CATG 5 cut(s) 65, 571, 892, 998, 1209
DdeI CTNAG 3 cut(s) 35, 544, 717
DpnI GATC 2 cut(s) 130, 656
DpnII GATC 2 cut(s) 128, 654
Eam1104I CTCTTC 6 cut(s) 36, 304, 367, 430, 493, 744
EarI CTCTTC 6 cut(s) 36, 304, 367, 430, 493, 744
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 1099
Eco47III AGCGCT 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 947
EcoICRI GAGCTC 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 1099
EcoRII CCWGG 2 cut(s) 577, 1184
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 5 cut(s) 68, 574, 895, 1001, 1212
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 2 cut(s) 936, 1112
FatI CATG 5 cut(s) 64, 570, 891, 997, 1208
FauNDI CATATG 1 cut(s) 1110
Fnu4HI GCNGC 3 cut(s) 45, 69, 1017
FokI GGATG 3 cut(s) 135, 499, 884
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 45, 69, 1017
FspBI CTAG 2 cut(s) 41, 1082
GlaI GCGC 3 cut(s) 575, 646, 793
GluI GCNGC 3 cut(s) 45, 69, 1017
GsuI CTGGAG 7 cut(s) 115, 214, 274, 337, 400, 463, 747
HaeII RGCGCY 1 cut(s) 648
HapII CCGG 2 cut(s) 920, 1140
HhaI GCGC 3 cut(s) 576, 647, 794
Hin1II CATG 5 cut(s) 68, 574, 895, 1001, 1212
Hin6I GCGC 3 cut(s) 574, 645, 792
HinP1I GCGC 3 cut(s) 574, 645, 792
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 2 cut(s) 155, 806
HpaII CCGG 2 cut(s) 920, 1140
HphI GGTGA 1 cut(s) 953
Hpy166II GTNNAC 2 cut(s) 140, 1129
Hpy188I TCNGA 4 cut(s) 517, 718, 1093, 1194
Hpy188III TCNNGA 4 cut(s) 152, 764, 862, 1082
Hpy8I GTNNAC 2 cut(s) 140, 1129
Hpy99I CGWCG 1 cut(s) 868
HpyAV CCTTC 4 cut(s) 559, 670, 1048, 1126
HpyCH4IV ACGT 3 cut(s) 186, 849, 1131
HpyCH4V TGCA 3 cut(s) 148, 1001, 1208
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 65, 77, 1022
HpyF3I CTNAG 3 cut(s) 35, 544, 717
HpySE526I ACGT 3 cut(s) 186, 849, 1131
Hsp92II CATG 5 cut(s) 68, 574, 895, 1001, 1212
HspAI GCGC 3 cut(s) 574, 645, 792
KflI GGGWCCC 1 cut(s) 1099
Kzo9I GATC 2 cut(s) 128, 654
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 4 cut(s) 96, 104, 766, 884
Lsp1109I GCAGC 3 cut(s) 55, 56, 1028
LweI GCATC 3 cut(s) 111, 157, 1165
MaeI CTAG 2 cut(s) 41, 1082
MaeII ACGT 3 cut(s) 186, 849, 1131
MaeIII GTNAC 2 cut(s) 941, 1066
MalI GATC 2 cut(s) 130, 656
MboI GATC 2 cut(s) 128, 654
MboII GAAGA 9 cut(s) 23, 179, 321, 384, 447, 510, 547, 761, 940
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 101, 179
MluCI AATT 4 cut(s) 599, 610, 684, 732
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 540
MseI TTAA 4 cut(s) 735, 771, 1059, 1134
MslI CAYNNNNRTG 3 cut(s) 119, 587, 1093
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 2 cut(s) 920, 1140
MspR9I CCNGG 4 cut(s) 579, 921, 1140, 1186
MvaI CCWGG 2 cut(s) 579, 1186
MwoI GCNNNNNNNGC 4 cut(s) 50, 65, 77, 1022
NciI CCSGG 2 cut(s) 921, 1140
NdeI CATATG 1 cut(s) 1110
NdeII GATC 2 cut(s) 128, 654
NlaIII CATG 5 cut(s) 68, 574, 895, 1001, 1212
NlaIV GGNNCC 5 cut(s) 886, 1100, 1101, 1144, 1191
NmuCI GTSAC 1 cut(s) 941
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 1 cut(s) 830
PaqCI CACCTGC 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 806
PflFI GACNNNGTC 1 cut(s) 947
PkrI GCNGC 3 cut(s) 46, 70, 1018
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 1099
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 101
Psp1406I AACGTT 2 cut(s) 849, 1131
Psp5II RGGWCCY 1 cut(s) 1099
Psp6I CCWGG 2 cut(s) 577, 1184
PspGI CCWGG 2 cut(s) 577, 1184
PspN4I GGNNCC 5 cut(s) 886, 1100, 1101, 1144, 1191
PspPI GGNCC 1 cut(s) 1099
PspPPI RGGWCCY 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 947
RseI CAYNNNNRTG 3 cut(s) 119, 587, 1093
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 735, 771, 1059, 1134
SatI GCNGC 3 cut(s) 45, 69, 1017
Sau3AI GATC 2 cut(s) 128, 654
Sau96I GGNCC 1 cut(s) 1099
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 579, 921, 1140, 1186
SduI GDGCHC 2 cut(s) 101, 179
SfaNI GCATC 3 cut(s) 111, 157, 1165
SfuI TTCGAA 1 cut(s) 830
SinI GGWCC 1 cut(s) 1099
SmiMI CAYNNNNRTG 3 cut(s) 119, 587, 1093
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 4 cut(s) 599, 610, 684, 732
SspMI CTAG 2 cut(s) 41, 1082
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 4 cut(s) 577, 919, 1138, 1184
TaiI ACGT 3 cut(s) 189, 852, 1134
TaqI TCGA 4 cut(s) 653, 747, 830, 863
TasI AATT 4 cut(s) 599, 610, 684, 732
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 4 cut(s) 735, 771, 1059, 1134
Tru9I TTAA 4 cut(s) 735, 771, 1059, 1134
TscAI CASTG 5 cut(s) 54, 60, 142, 708, 1177
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 3 cut(s) 44, 68, 1016
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 3 cut(s) 180, 605, 1153
TspGWI ACGGA 2 cut(s) 91, 881
TspRI CASTG 5 cut(s) 54, 60, 142, 708, 1177
Tth111I GACNNNGTC 1 cut(s) 947
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 1 cut(s) 1099
XapI RAATTY 2 cut(s) 610, 684
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 1 cut(s) 574
XspI CTAG 2 cut(s) 41, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.