Rh6DG454900

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000559
Physical Location & Seq
Reverse (-)
62632755 .. 62635339
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG454900.1

Sequence Viewer

Length: 1209 bp
ATGCTGATGAGAGTTCCAATGTTGCAGTTCACACTGGTGGTAAGCCATGCTGCTCTATCACCTCAACTTTACTGGAATTCTGTCTTGCCAAACACACGGATGCCAAAAACTCTCAGTGAACTTCTGCAATCTGACTTCAGCGAAGAAAAGAGCACCTCAGTTGGGGTAGGGAAGGGTGGTGTGAACGTTAACGCAGGTAAAGGAAAGCCCGCAGGCACCAACGTCAATGTTGGGAAGGGTGGTGTTCATGTTAACACTGGAAAAGGAAAGCCTGGAGGAACCAATGTGAATGTCGGAAAGGGTGGTGTGAATGTGCACGCTCCAAAAGGAAAGCCAGGGGGTGGTACCAATGTCAACGTAGGGGGAAAAGGTGGTGTTGGAGTGCAGACTGGAAAGCCCGGCAAGGGAACCAACGTGGGTGTTGGCAAAGGAGGAGTGCATGTAAGCACAGGTCACAAGGGAAAACCTGTATATGTTGGCGTAACACCAGGCAAAAGCCCATTTGTATACAACTATGCTGCTACTGAGACTCAACTTCATGAAGATCCACAGATCGTACTTTTCTTCTTGGAGAAGGACATGCATCCTGGCACAAAGATGAACTTGCGCTTCACTAAAAGTTCAGACACAGCAACTTTCCTTCCACGCAAAACTGCAGAGTCGATCCCTTTCTCATCTAATAAACTGCCCGAAATTTTGGACCAGTTTTCAGTGAAACCAGAATCTGCAGAAGCAGACACAATTAAGCAAACCATTGAAGAGTGTGAGAAACCAGGTATTAGCGGAGAGGAAAAATATTGTGCAACCTCTTTGGAGTCAATGATTGACTTCAGCACTTCCAAGCTTGGAAGGAACATTCAGGCAGTCTCAACAGAGGTTGAAAAGGGAACCACCATGCAGAAGTACACAATATTGCCTGGAGTGAAGAAGCTGGCAGGCGACAAATCCATTGCATGCCATAAGCAGAACTATGTGTATGCTGTCTTCTACTGCCATGCAACAACAACCACAAGAGCTTATATAGTGCCGCTGGAAGGTGCTGATGGAGTGAACGCTAAGGCAGTAGCAGTCTGCCACACAGACACCTCAGAATGGAACCCAAAGCATTTGGCCTTCCAAGTTCTCAAAGTTAAGCCAGGAACCATTCCCATCTGCCATTTTCTTCCCAGTGATCATATTGTCTGGGTTCCAAACCAGAAATCCACATAA

Protein Analysis

402

Amino Acids

42.71

Weight (kDa)

9.34

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 187 - 397 5.3e-91 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 215, 344
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 507
AciI CCGC 3 cut(s) 210, 783, 1028
AclI AACGTT 1 cut(s) 186
AclWI GGATC 2 cut(s) 539, 658
AcsI RAATTY 2 cut(s) 76, 693
AcuI CTGAAG 2 cut(s) 121, 814
AfaI GTAC 3 cut(s) 346, 558, 905
AfiI CCNNNNNNNGG 5 cut(s) 162, 341, 404, 1034, 1092
AgsI TTSAA 2 cut(s) 758, 881
AjnI CCWGG 7 cut(s) 271, 334, 487, 586, 772, 916, 1135
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 3 cut(s) 844, 931, 1016
AluI AGCT 3 cut(s) 844, 931, 1016
Alw21I GWGCWC 2 cut(s) 155, 318
Alw26I GTCTC 2 cut(s) 521, 871
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 2 cut(s) 539, 658
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 1 cut(s) 1110
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 50, 518
ApoI RAATTY 2 cut(s) 76, 693
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BanI GGYRCC 2 cut(s) 215, 344
BarI GAAGNNNNNNTAC 2 cut(s) 968, 1000
BbsI GAAGAC 1 cut(s) 976
Bbv12I GWGCWC 2 cut(s) 155, 318
BbvI GCAGC 2 cut(s) 37, 505
BccI CCATC 2 cut(s) 1037, 1157
BciT130I CCWGG 7 cut(s) 273, 336, 489, 588, 774, 918, 1137
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 521, 871
BfmI CTRYAG 2 cut(s) 654, 726
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 51, 519, 1028
BlsI GCNGC 3 cut(s) 52, 520, 1029
Bme1390I CCNGG 8 cut(s) 273, 336, 399, 489, 588, 774, 918, 1137
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 8 cut(s) 217, 280, 346, 409, 889, 1097, 1141, 1188
BmrFI CCNGG 8 cut(s) 273, 336, 399, 489, 588, 774, 918, 1137
BmrI ACTGGG 1 cut(s) 1161
BmsI GCATC 2 cut(s) 90, 592
BmuI ACTGGG 1 cut(s) 1161
BpiI GAAGAC 1 cut(s) 976
BpmI CTGGAG 2 cut(s) 294, 939
Bpu10I CCTNAGC 1 cut(s) 1056
BpuMI CCSGG 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 341, 404, 1034, 1092
Bse1I ACTGG 6 cut(s) 39, 77, 262, 394, 703, 1167
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 7 cut(s) 273, 336, 489, 588, 774, 918, 1137
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 105, 583
BseLI CCNNNNNNNGG 5 cut(s) 162, 341, 404, 1034, 1092
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 4 cut(s) 127, 171, 516, 1101
BseNI ACTGG 6 cut(s) 39, 77, 262, 394, 703, 1167
BseRI GAGGAG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 37, 505
BsgI GTGCAG 1 cut(s) 404
BshFI GGCC 1 cut(s) 1112
BshNI GGYRCC 2 cut(s) 215, 344
BsiHKAI GWGCWC 2 cut(s) 155, 318
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 5 cut(s) 162, 341, 404, 1034, 1092
BsmAI GTCTC 2 cut(s) 521, 871
BsnI GGCC 1 cut(s) 1112
Bsp1286I GDGCHC 2 cut(s) 155, 318
Bsp143I GATC 4 cut(s) 544, 552, 663, 1171
BspACI CCGC 3 cut(s) 210, 783, 1028
BspANI GGCC 1 cut(s) 1112
BspCNI CTCAG 4 cut(s) 126, 170, 517, 1100
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 8 cut(s) 217, 280, 346, 409, 889, 1097, 1141, 1188
BspMAI CTGCAG 2 cut(s) 658, 730
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 2 cut(s) 539, 658
BspT107I GGYRCC 2 cut(s) 215, 344
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 6 cut(s) 39, 77, 262, 394, 703, 1167
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 4 cut(s) 544, 552, 663, 1171
BssNAI GTATAC 1 cut(s) 508
Bst1107I GTATAC 1 cut(s) 508
Bst2UI CCWGG 7 cut(s) 273, 336, 489, 588, 774, 918, 1137
Bst6I CTCTTC 1 cut(s) 753
BstC8I GCNNGC 6 cut(s) 210, 214, 318, 933, 937, 955
BstDEI CTNAG 5 cut(s) 113, 157, 525, 1056, 1087
BstF5I GGATG 2 cut(s) 105, 583
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 4 cut(s) 547, 555, 666, 1174
BstMAI GTCTC 2 cut(s) 521, 871
BstMBI GATC 4 cut(s) 544, 552, 663, 1171
BstNI CCWGG 7 cut(s) 273, 336, 489, 588, 774, 918, 1137
BstNSI RCATGY 3 cut(s) 443, 583, 957
BstSCI CCNGG 8 cut(s) 271, 334, 397, 487, 586, 772, 916, 1135
BstSFI CTRYAG 2 cut(s) 654, 726
BstSLI GKGCMC 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 37, 505
BstV2I GAAGAC 1 cut(s) 976
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZ17I GTATAC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 1112
BtsCI GGATG 2 cut(s) 105, 583
BtsIMutI CAGTG 5 cut(s) 32, 121, 255, 717, 1174
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 6 cut(s) 210, 214, 318, 933, 937, 955
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 609
Cfr13I GGNCC 1 cut(s) 700
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 3 cut(s) 345, 557, 904
CviAII CATG 8 cut(s) 47, 248, 440, 539, 580, 895, 954, 995
CviQI GTAC 3 cut(s) 345, 557, 904
DdeI CTNAG 5 cut(s) 113, 157, 525, 1056, 1087
DpnI GATC 4 cut(s) 546, 554, 665, 1173
DpnII GATC 4 cut(s) 544, 552, 663, 1171
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 2 cut(s) 121, 814
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 7 cut(s) 271, 334, 487, 586, 772, 916, 1135
EcoT22I ATGCAT 1 cut(s) 585
FaeI CATG 8 cut(s) 50, 251, 443, 542, 583, 898, 957, 998
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FatI CATG 8 cut(s) 46, 247, 439, 538, 579, 894, 953, 994
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 3 cut(s) 51, 519, 1028
FokI GGATG 2 cut(s) 112, 570
Fsp4HI GCNGC 3 cut(s) 51, 519, 1028
GlaI GCGC 1 cut(s) 608
GluI GCNGC 3 cut(s) 51, 519, 1028
GsuI CTGGAG 2 cut(s) 294, 939
HaeIII GGCC 1 cut(s) 1112
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 609
Hin1II CATG 8 cut(s) 50, 251, 443, 542, 583, 898, 957, 998
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 3 cut(s) 190, 253, 355
HindII GTYRAC 3 cut(s) 190, 253, 355
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 4 cut(s) 529, 659, 722, 815
HpaI GTTAAC 2 cut(s) 190, 253
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 133, 296, 625, 1090
Hpy188III TCNNGA 1 cut(s) 539
HpyAV CCTTC 7 cut(s) 166, 229, 568, 650, 843, 1028, 1123
HpyCH4IV ACGT 4 cut(s) 186, 222, 357, 414
HpyF3I CTNAG 5 cut(s) 113, 157, 525, 1056, 1087
HpySE526I ACGT 4 cut(s) 186, 222, 357, 414
Hsp92II CATG 8 cut(s) 50, 251, 443, 542, 583, 898, 957, 998
HspAI GCGC 1 cut(s) 607
KpnI GGTACC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 1171
KspAI GTTAAC 2 cut(s) 190, 253
Kzo9I GATC 4 cut(s) 544, 552, 663, 1171
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 2 cut(s) 37, 505
LweI GCATC 2 cut(s) 90, 592
MabI ACCWGGT 1 cut(s) 772
MaeII ACGT 4 cut(s) 186, 222, 357, 414
MaeIII GTNAC 2 cut(s) 452, 481
MalI GATC 4 cut(s) 546, 554, 665, 1173
MboI GATC 4 cut(s) 544, 552, 663, 1171
MboII GAAGA 7 cut(s) 155, 554, 556, 770, 937, 976, 1154
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 155, 318
MluCI AATT 3 cut(s) 76, 693, 741
MlyI GAGTC 3 cut(s) 523, 668, 824
MmeI TCCRAC 2 cut(s) 274, 358
MnlI CCTC 8 cut(s) 72, 166, 269, 425, 781, 817, 868, 1096
Mph1103I ATGCAT 1 cut(s) 585
MseI TTAA 4 cut(s) 189, 252, 744, 1131
MslI CAYNNNNRTG 3 cut(s) 35, 98, 596
MspA1I CMGCKG 1 cut(s) 1030
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 8 cut(s) 273, 336, 399, 489, 588, 774, 918, 1137
MvaI CCWGG 7 cut(s) 273, 336, 489, 588, 774, 918, 1137
NciI CCSGG 1 cut(s) 399
NdeII GATC 4 cut(s) 544, 552, 663, 1171
NlaIII CATG 8 cut(s) 50, 251, 443, 542, 583, 898, 957, 998
NlaIV GGNNCC 8 cut(s) 217, 280, 346, 409, 889, 1097, 1141, 1188
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 3 cut(s) 443, 583, 957
OliI CACNNNNGTG 1 cut(s) 35
PaeI GCATGC 1 cut(s) 957
PagI TCATGA 1 cut(s) 538
PfeI GAWTC 1 cut(s) 722
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 52, 520, 1029
PleI GAGTC 3 cut(s) 523, 667, 823
PpsI GAGTC 3 cut(s) 523, 667, 823
Psp1406I AACGTT 1 cut(s) 186
Psp6I CCWGG 7 cut(s) 271, 334, 487, 586, 772, 916, 1135
PspGI CCWGG 7 cut(s) 271, 334, 487, 586, 772, 916, 1135
PspN4I GGNNCC 8 cut(s) 217, 280, 346, 409, 889, 1097, 1141, 1188
PspPI GGNCC 1 cut(s) 700
PstI CTGCAG 2 cut(s) 658, 730
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 346, 558, 905
RsaNI GTAC 3 cut(s) 345, 557, 904
RseI CAYNNNNRTG 3 cut(s) 35, 98, 596
SaqAI TTAA 4 cut(s) 189, 252, 744, 1131
SatI GCNGC 3 cut(s) 51, 519, 1028
Sau3AI GATC 4 cut(s) 544, 552, 663, 1171
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 3 cut(s) 523, 668, 824
ScrFI CCNGG 8 cut(s) 273, 336, 399, 489, 588, 774, 918, 1137
SduI GDGCHC 2 cut(s) 155, 318
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 2 cut(s) 90, 592
SfcI CTRYAG 2 cut(s) 654, 726
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 3 cut(s) 35, 98, 596
SphI GCATGC 1 cut(s) 957
Sse9I AATT 3 cut(s) 76, 693, 741
SsiI CCGC 3 cut(s) 210, 783, 1028
SspI AATATT 2 cut(s) 797, 912
StyD4I CCNGG 8 cut(s) 271, 334, 397, 487, 586, 772, 916, 1135
TaiI ACGT 4 cut(s) 189, 225, 360, 417
TaqI TCGA 1 cut(s) 662
TasI AATT 3 cut(s) 76, 693, 741
TatI WGTACW 1 cut(s) 903
TauI GCSGC 1 cut(s) 1030
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 4 cut(s) 189, 252, 744, 1131
Tru9I TTAA 4 cut(s) 189, 252, 744, 1131
TscAI CASTG 5 cut(s) 39, 121, 262, 717, 1174
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 50, 518
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 4 cut(s) 236, 527, 555, 614
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 5 cut(s) 39, 121, 262, 717, 1174
Van91I CCANNNNNTGG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 2 cut(s) 76, 693
XceI RCATGY 3 cut(s) 443, 583, 957
XmiI GTMKAC 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.