Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Reverse (-)

26297019 .. 26297420

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1203300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATCGAGTTTGCCACCTCCACGCTGGGATCAAGAAATGTTCTTGCAATCGCAACGGAGGTGGAACAAGGAGCTGCCCCGATGCAGAAGTTCACAATAACCGCAAATGGAATGAAGAGGCTGGCAGCCAGCAACATCACGGTGTGTCATAAGATGAATTATGTGCATGTCGTCTTCTACTGCCATTCAATTGAAAAAACGACGACTTGTGTGGTGCCTCTGCAAGGAGCTGACGGGTCGAAAGCCAAAGCCGTAGCAGCCTGCCATCAAGACACATCTCAATGGAACCCAAATCATTATGCCTTCAAAGAGAACAACGTTGAGCGAGGAACCGTTCCCCCCATCTGCCATTTTCTTAAAGCTGAGGATGTTGCTTGGCTTACAAACCAAAAACCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

134

Amino Acids

14.59

Weight (kDa)

8.3

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	1 - 127	1.4e-41	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	102
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	189, 194, 307
AluBI	AGCT	3 cut(s)	74, 230, 362
AluI	AGCT	3 cut(s)	74, 230, 362
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	74, 125, 257
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	61, 137, 269
BccI	CCATC	2 cut(s)	273, 350
BceAI	ACGGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	75, 126, 258
BlsI	GCNGC	3 cut(s)	76, 127, 259
BmiI	GGNNCC	3 cut(s)	216, 287, 331
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	61, 137, 269
BseYI	CCCAGC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	3, 29
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	216, 287, 331
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	214
BssMI	GATC	2 cut(s)	3, 29
Bst4CI	ACNGT	2 cut(s)	142, 334
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	123, 130, 262
BstDEI	CTNAG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	6, 32
BstMBI	GATC	2 cut(s)	3, 29
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	61, 137, 269
BstV2I	GAAGAC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	123, 130, 262
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	9 cut(s)	74, 121, 128, 230, 245, 251, 260, 362, 379
CviKI_1	RGCY	9 cut(s)	74, 121, 128, 230, 245, 251, 260, 362, 379
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	5, 31
DpnII	GATC	2 cut(s)	3, 29
DraIII	CACNNNGTG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	150, 162, 168, 300
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	75, 126, 258
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	3 cut(s)	75, 126, 258
GluI	GCNGC	3 cut(s)	75, 126, 258
GsaI	CCCAGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	33, 269
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	142, 334
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	4 cut(s)	47, 85, 166, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	3, 29
LmnI	GCTCC	2 cut(s)	71, 227
LpnPI	CCDG	4 cut(s)	11, 107, 142, 274
Lsp1109I	GCAGC	3 cut(s)	61, 137, 269
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	318
MalI	GATC	2 cut(s)	5, 31
MboI	GATC	2 cut(s)	3, 29
MboII	GAAGA	2 cut(s)	127, 166
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	2 cut(s)	157, 189
MnlI	CCTC	6 cut(s)	28, 52, 111, 228, 320, 358
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	140, 280
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	3, 29
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	216, 287, 331
NspI	RCATGY	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	76, 127, 259
Psp1406I	AACGTT	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	216, 287, 331
RseI	CAYNNNNRTG	2 cut(s)	140, 280
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	75, 126, 258
Sau3AI	GATC	2 cut(s)	3, 29
SetI	ASST	6 cut(s)	20, 63, 76, 232, 321, 364
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	2 cut(s)	140, 280
Sse9I	AATT	2 cut(s)	157, 189
SsiI	CCGC	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	142, 334
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	6, 239
TasI	AATT	2 cut(s)	157, 189
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	3 cut(s)	74, 125, 257
TspDTI	ATGAA	2 cut(s)	128, 170
TspGWI	ACGGA	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	222
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.