Rorug01G0250000

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000559
Physical Location & Seq
Forward (+)
35845141 .. 35847572
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0250000.1

Sequence Viewer

Length: 1101 bp
ATGGCGAGTTTGCAGAGCTGCGGCAGCGTGTGCCTGAGAGAGTCGGCTCTCTTGCTTCCGCGTCGCAATGTTAACGATAGCTACAAGAGTAGGACTGTAAAATGGAGGAGTCCACGAGGAGCTGTGCTGCCGAATTTTCATCTTCCGATGCGTAGTTTCGAAATTAAAAACAGGACATCTACAGAGGAGATAAAGTCACTTAGATTGATAACAGCCATCAAAACGCCATATCTACCGGATGGCAGATTTGATCTTGAAGCGTATGATGCATTGGTTAATACGCAGATTGAACATGGGGCTGAAGGTGTGATTGTTGGTGGCACAACGGGTGAAGGTCAGTTGATGAGTTGGGACGAGCACATAATGCTCATAGGCCACACGATCAACTGTTATGGTGGATCAATTAAGGTAATAGGAAACACTGGCAGCAACTCCACAAGGGAAGCAGTTCATGCTACTGAACAAGGGTTTGCAGTTGGGATGCATGCTGCTCTGCACATCAATCCTTATTATGGAAAGACCTCCTTGGAGGGATTGGTTAAGCACTTCGAAAGTGTCTTATCTATGGGACCCACTATCATATACAATGTGCCATCACGAACTGGCCAAGATATCCCCCACCAGGTGATTAACACGTTGGCACAGAATGCCAACTTGGCGGGTGTCAAGGAGTGCGTTGGAAATGATCGGATTATAGAGCACATTGACAAGGGAATTGTGGTTTGGAGTGGGAATGATGATGAGTGCCATGATTCAAGGTGGAACCACGGAGCTACTGGAGTCATATCTGTTACTAGTAATTTGGTTCCGGGTTTAATGCGAGACCTCATGTTTGGGGGGAAGAACCCTTCCCTTAATGCAAAGCTCATGCCTCTGATTGAGTGGCTTTTTCAGGAGCCAAACCCCATTGGCCTAAATACAGCACTTGCCCAACTTGGTGTCGTGAGACCAGTCTTCAGGCTGCCATATGTACCTCTTCCTTATGAAAAGAGAGTAGAGTTTGTCAACCTGGTTAAGCATATTGGGCGGGAGCATTTTGTTGGAGAAAAGGGTGTTCAAGTTCTTGATGATGATGACTTCACTTATTTGGATCGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

366

Amino Acids

40.52

Weight (kDa)

6.39

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHDPS PF00701 67 - 340 7.4e-94 Dihydrodipicolinate synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 21, 59, 659, 1027
AclWI GGATC 2 cut(s) 406, 1098
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 321, 940
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 972
AfiI CCNNNNNNNGG 2 cut(s) 512, 622
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 4 cut(s) 257, 290, 756, 1058
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 621, 1008
AjuI GAANNNNNNNTTGG 4 cut(s) 638, 670, 706, 738
AluBI AGCT 5 cut(s) 18, 81, 122, 773, 865
AluI AGCT 5 cut(s) 18, 81, 122, 773, 865
Alw21I GWGCWC 2 cut(s) 360, 702
Alw26I GTCTC 2 cut(s) 816, 940
AlwI GGATC 2 cut(s) 406, 1098
AoxI GGCC 3 cut(s) 373, 604, 910
ApeKI GCWGC 6 cut(s) 18, 24, 127, 426, 488, 961
ApoI RAATTY 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 2 cut(s) 341, 637
AsuII TTCGAA 2 cut(s) 159, 549
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 606
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 946
Bbv12I GWGCWC 2 cut(s) 360, 702
BbvI GCAGC 6 cut(s) 5, 36, 114, 438, 475, 948
BccI CCATC 3 cut(s) 224, 233, 601
BciT130I CCWGG 2 cut(s) 623, 1010
BcnI CCSGG 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 816, 940
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 7 cut(s) 19, 22, 25, 128, 427, 489, 962
BlsI GCNGC 7 cut(s) 20, 23, 26, 129, 428, 490, 963
Bme1390I CCNGG 3 cut(s) 623, 810, 1010
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 5 cut(s) 570, 571, 764, 807, 897
BmrFI CCNGG 3 cut(s) 623, 810, 1010
BmsI GCATC 3 cut(s) 138, 256, 471
BpiI GAAGAC 1 cut(s) 946
BpmI CTGGAG 1 cut(s) 798
Bpu14I TTCGAA 2 cut(s) 159, 549
BpuMI CCSGG 1 cut(s) 810
Bsa29I ATCGAT 1 cut(s) 1093
BsaI GGTCTC 2 cut(s) 816, 940
BsaJI CCNNGG 2 cut(s) 525, 766
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 622
Bse1I ACTGG 4 cut(s) 427, 607, 781, 950
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 2 cut(s) 623, 1010
BseCI ATCGAT 1 cut(s) 1093
BseDI CCNNGG 2 cut(s) 525, 766
BseGI GGATG 2 cut(s) 244, 486
BseLI CCNNNNNNNGG 2 cut(s) 512, 622
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 4 cut(s) 427, 607, 781, 950
BseRI GAGGAG 3 cut(s) 121, 132, 200
BseXI GCAGC 6 cut(s) 5, 36, 114, 438, 475, 948
BsgI GTGCAG 1 cut(s) 479
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 375, 606, 912
BshVI ATCGAT 1 cut(s) 1093
BsiHKAI GWGCWC 2 cut(s) 360, 702
BsiSI CCGG 2 cut(s) 236, 809
BslFI GGGAC 2 cut(s) 365, 582
BslI CCNNNNNNNGG 2 cut(s) 512, 622
BsmAI GTCTC 2 cut(s) 816, 940
BsmFI GGGAC 2 cut(s) 365, 582
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 375, 606, 912
Bso31I GGTCTC 2 cut(s) 816, 940
Bsp119I TTCGAA 2 cut(s) 159, 549
Bsp1286I GDGCHC 2 cut(s) 360, 702
Bsp143I GATC 5 cut(s) 250, 381, 398, 685, 1090
BspACI CCGC 4 cut(s) 21, 59, 659, 1027
BspANI GGCC 3 cut(s) 375, 606, 912
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 1093
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 570, 571, 764, 807, 897
BspPI GGATC 2 cut(s) 406, 1098
BspT104I TTCGAA 2 cut(s) 159, 549
BspTNI GGTCTC 2 cut(s) 816, 940
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 4 cut(s) 427, 607, 781, 950
BssECI CCNNGG 2 cut(s) 525, 766
BssMI GATC 5 cut(s) 250, 381, 398, 685, 1090
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 623, 1010
Bst4CI ACNGT 2 cut(s) 97, 389
Bst6I CTCTTC 1 cut(s) 981
BstAPI GCANNNNNTGC 4 cut(s) 30, 364, 452, 647
BstBI TTCGAA 2 cut(s) 159, 549
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 35, 200
BstDSI CCRYGG 1 cut(s) 766
BstF5I GGATG 2 cut(s) 244, 486
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 5 cut(s) 253, 384, 401, 688, 1093
BstMAI GTCTC 2 cut(s) 816, 940
BstMBI GATC 5 cut(s) 250, 381, 398, 685, 1090
BstMWI GCNNNNNNNGC 8 cut(s) 24, 30, 266, 364, 452, 647, 656, 1024
BstNI CCWGG 2 cut(s) 623, 1010
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 3 cut(s) 621, 808, 1008
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 6 cut(s) 5, 36, 114, 438, 475, 948
BstV2I GAAGAC 1 cut(s) 946
Bsu15I ATCGAT 1 cut(s) 1093
BsuRI GGCC 3 cut(s) 375, 606, 912
BsuTUI ATCGAT 1 cut(s) 1093
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 2 cut(s) 244, 486
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 569
ClaI ATCGAT 1 cut(s) 1093
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 2 cut(s) 621, 1008
Csp6I GTAC 1 cut(s) 971
CviAII CATG 6 cut(s) 293, 452, 485, 749, 829, 868
CviQI GTAC 1 cut(s) 971
DdeI CTNAG 2 cut(s) 35, 200
DpnI GATC 5 cut(s) 252, 383, 400, 687, 1092
DpnII GATC 5 cut(s) 250, 381, 398, 685, 1090
DraIII CACNNNGTG 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 2 cut(s) 816, 940
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 321, 940
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 621, 1008
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 2 cut(s) 271, 486
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 6 cut(s) 296, 455, 488, 752, 832, 871
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 2 cut(s) 365, 582
FatI CATG 6 cut(s) 292, 451, 484, 748, 828, 867
FauI CCCGC 2 cut(s) 652, 1020
FauNDI CATATG 1 cut(s) 967
Fnu4HI GCNGC 7 cut(s) 19, 22, 25, 128, 427, 489, 962
FokI GGATG 2 cut(s) 251, 493
Fsp4HI GCNGC 7 cut(s) 19, 22, 25, 128, 427, 489, 962
FspBI CTAG 1 cut(s) 795
GluI GCNGC 7 cut(s) 19, 22, 25, 128, 427, 489, 962
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 3 cut(s) 375, 606, 912
HapII CCGG 2 cut(s) 236, 809
HgaI GACGC 1 cut(s) 50
Hin1II CATG 6 cut(s) 296, 455, 488, 752, 832, 871
HincII GTYRAC 2 cut(s) 73, 1006
HindII GTYRAC 2 cut(s) 73, 1006
HinfI GANTC 4 cut(s) 41, 109, 752, 780
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 236, 809
HphI GGTGA 2 cut(s) 341, 637
Hpy166II GTNNAC 3 cut(s) 73, 113, 1006
Hpy188I TCNGA 3 cut(s) 147, 690, 876
Hpy188III TCNNGA 5 cut(s) 254, 597, 893, 943, 1064
Hpy8I GTNNAC 3 cut(s) 73, 113, 1006
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 296, 326, 858
HpyCH4III ACNGT 2 cut(s) 97, 389
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 6 cut(s) 13, 269, 473, 484, 496, 860
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 30, 266, 364, 452, 647, 656, 1024
HpyF3I CTNAG 2 cut(s) 35, 200
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 6 cut(s) 296, 455, 488, 752, 832, 871
KflI GGGWCCC 1 cut(s) 569
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 250, 381, 398, 685, 1090
LmnI GCTCC 4 cut(s) 119, 770, 895, 1030
Lsp1109I GCAGC 6 cut(s) 5, 36, 114, 438, 475, 948
LweI GCATC 3 cut(s) 138, 256, 471
MabI ACCWGGT 2 cut(s) 621, 1008
MaeI CTAG 1 cut(s) 795
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 2 cut(s) 195, 790
MalI GATC 5 cut(s) 252, 383, 400, 687, 1092
MboI GATC 5 cut(s) 250, 381, 398, 685, 1090
MboII GAAGA 4 cut(s) 134, 853, 946, 968
MhlI GDGCHC 2 cut(s) 360, 702
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 5 cut(s) 133, 162, 402, 714, 799
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 3 cut(s) 50, 118, 789
MmeI TCCRAC 2 cut(s) 658, 1021
MnlI CCTC 8 cut(s) 99, 110, 178, 523, 532, 836, 882, 984
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 2 cut(s) 271, 486
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 1 cut(s) 606
MseI TTAA 9 cut(s) 72, 165, 276, 405, 540, 630, 815, 855, 1014
Msp20I TGGCCA 1 cut(s) 606
MspI CCGG 2 cut(s) 236, 809
MspR9I CCNGG 3 cut(s) 623, 810, 1010
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 2 cut(s) 623, 1010
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 8 cut(s) 24, 30, 266, 364, 452, 647, 656, 1024
NciI CCSGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 967
NdeII GATC 5 cut(s) 250, 381, 398, 685, 1090
NlaIII CATG 6 cut(s) 296, 455, 488, 752, 832, 871
NlaIV GGNNCC 5 cut(s) 570, 571, 764, 807, 897
NmuCI GTSAC 1 cut(s) 195
NsiI ATGCAT 2 cut(s) 271, 486
NspI RCATGY 1 cut(s) 488
NspV TTCGAA 2 cut(s) 159, 549
PaeI GCATGC 1 cut(s) 488
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 752
PkrI GCNGC 7 cut(s) 20, 23, 26, 129, 428, 490, 963
PleI GAGTC 3 cut(s) 49, 117, 788
PpsI GAGTC 3 cut(s) 49, 117, 788
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 621, 1008
PspGI CCWGG 2 cut(s) 621, 1008
PspN4I GGNNCC 5 cut(s) 570, 571, 764, 807, 897
PspPI GGNCC 1 cut(s) 569
PspPPI RGGWCCY 1 cut(s) 569
RsaI GTAC 1 cut(s) 972
RsaNI GTAC 1 cut(s) 971
SaqAI TTAA 9 cut(s) 72, 165, 276, 405, 540, 630, 815, 855, 1014
SatI GCNGC 7 cut(s) 19, 22, 25, 128, 427, 489, 962
Sau3AI GATC 5 cut(s) 250, 381, 398, 685, 1090
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 3 cut(s) 50, 118, 789
ScrFI CCNGG 3 cut(s) 623, 810, 1010
SduI GDGCHC 2 cut(s) 360, 702
SexAI ACCWGGT 2 cut(s) 621, 1008
SfaNI GCATC 3 cut(s) 138, 256, 471
SfcI CTRYAG 1 cut(s) 180
SfuI TTCGAA 2 cut(s) 159, 549
SinI GGWCC 1 cut(s) 569
SpeI ACTAGT 1 cut(s) 794
SphI GCATGC 1 cut(s) 488
Sse9I AATT 5 cut(s) 133, 162, 402, 714, 799
SsiI CCGC 4 cut(s) 21, 59, 659, 1027
SspMI CTAG 1 cut(s) 795
StyD4I CCNGG 3 cut(s) 621, 808, 1008
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 97, 389
TaiI ACGT 1 cut(s) 638
TaqI TCGA 3 cut(s) 159, 549, 1093
TasI AATT 5 cut(s) 133, 162, 402, 714, 799
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 9 cut(s) 72, 165, 276, 405, 540, 630, 815, 855, 1014
Tru9I TTAA 9 cut(s) 72, 165, 276, 405, 540, 630, 815, 855, 1014
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 6 cut(s) 18, 24, 127, 426, 488, 961
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 128, 440, 999
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 795
Zsp2I ATGCAT 2 cut(s) 271, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.