Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Reverse (-)

1210046 .. 1213465

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTCTTGAGAAGACTTAGAGACAGAACCGATAGAGTGGGGATTGAAATTCCGAAGGTTGAAGTTCGATACGAGAATTTGTCGATTGAAGGAGATGTGTATATTGGGAGCAGAGCACTGCCTACTCTGCTCAGTGCTACCTTAAACACTATTGAGGGTACCAGTTTCGACCTCATTGCAGGAGAAGAAAACCCAAGACTTGCTGGAGGCACAAATGTCGATCTTGTTGAAAAAGATGGGACGAAACCTGCATATGTTGGAGTAGCACAAGAACGATCCGCCTATGCTTACGGTAGTAATCATGCACATGCCACTCATGAGAATCATCAACTCCATAAAGATGACAACCCACAGGCAACTCTGTTCTTCTTGGACAAGGACATGCATCCTGGCACAACAATGAACTTGAACTTCACTAGAAATTCGAATGCGGCGAATTTCCTGCTGCGCAAAACCGCAGAGTCGATCCCTTTCTCGTCGAATGAATTACCTGAAATTTTCAACCAATTTTCAGTGAAATTGGAATCTGTGGAAGCCAATATAATTAAGCAAACAATTGAAGAGTGCGAAGCTCCAGGCATAGAAGGAGAGGAAAATTATTGTGCCACCTCGTTAGAGTCAATGATTGATTTCACCACTTCGAAGCTCGGAAGAAACATTCAGGCATTCTCGACGGAGGTGTTGGAGAAAGGAGGAACCATGTCCATAATTTCTGTGAAGAAGCTTGCAGGTGACAAAGCCGTTGTGTGCCATAAGCAGAACTATCCGTACGCAGTGTTTTACTGCCATGCAACAAAACCTACAAGAGCTTACGTGGTGCCCCTGAGAGGTTCTGATGGGGTGAAGGCTAAAGCAGTAGCAATCTGCCATGTGGACACATCAGAATGGGACCCACAACATTTGGCCTTCAAAGTGCTCAAGGTTAAGCCCGGGACCATTCCCATCTGCCACTTCCTTCCTAGTGATGATGTTGTTTGGGTTCCAACCCGCAAATCTACATTAGTAGTTGAACCCATCAGTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

343

Amino Acids

37.78

Weight (kDa)

5.91

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	719
Acc16I	TGCGCA	1 cut(s)	449
Acc36I	ACCTGC	2 cut(s)	256, 719
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	158, 817
AciI	CCGC	4 cut(s)	279, 431, 456, 988
AclWI	GGATC	2 cut(s)	270, 460
AcsI	RAATTY	5 cut(s)	48, 76, 421, 436, 495
AfaI	GTAC	2 cut(s)	160, 770
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	9 cut(s)	47, 62, 89, 230, 409, 502, 560, 910, 1010
AjnI	CCWGG	2 cut(s)	388, 574
AluBI	AGCT	4 cut(s)	572, 646, 724, 809
AluI	AGCT	4 cut(s)	572, 646, 724, 809
Alw21I	GWGCWC	2 cut(s)	118, 918
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	270, 460
Ama87I	CYCGRG	1 cut(s)	929
AoxI	GGCC	1 cut(s)	903
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	5 cut(s)	48, 76, 421, 436, 495
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	889, 933
AsuC2I	CCSGG	2 cut(s)	930, 931
AsuHPI	GGTGA	3 cut(s)	625, 743, 853
AsuII	TTCGAA	2 cut(s)	425, 641
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	889, 933
BaeGI	GKGCMC	1 cut(s)	822
BanI	GGYRCC	2 cut(s)	158, 817
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	118, 918
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	4 cut(s)	230, 830, 950, 1022
BceAI	ACGGC	1 cut(s)	725
BcgI	CGANNNNNNTGC	6 cut(s)	158, 192, 199, 233, 424, 458
BciT130I	CCWGG	2 cut(s)	390, 576
BcnI	CCSGG	2 cut(s)	930, 931
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	417, 960
BfuAI	ACCTGC	2 cut(s)	256, 719
BisI	GCNGC	2 cut(s)	432, 446
BlsI	GCNGC	2 cut(s)	433, 447
Bme1390I	CCNGG	4 cut(s)	390, 576, 930, 931
Bme18I	GGWCC	2 cut(s)	889, 933
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	889, 933
BmiI	GGNNCC	7 cut(s)	160, 697, 819, 890, 891, 934, 981
BmrFI	CCNGG	4 cut(s)	390, 576, 930, 931
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	225, 558
Bpu14I	TTCGAA	2 cut(s)	425, 641
BpuEI	CTTGAG	2 cut(s)	28, 902
BpuMI	CCSGG	2 cut(s)	930, 931
BsaAI	YACGTR	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	929
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	390, 576
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	145, 815
BseNI	ACTGG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	822
BseXI	GCAGC	1 cut(s)	432
BshFI	GGCC	1 cut(s)	905
BshNI	GGYRCC	2 cut(s)	158, 817
BsiHKAI	GWGCWC	2 cut(s)	118, 918
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	1 cut(s)	930
BsiWI	CGTACG	1 cut(s)	768
BslFI	GGGAC	3 cut(s)	253, 902, 946
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	3 cut(s)	253, 902, 946
BsmI	GAATGC	2 cut(s)	433, 665
BsnI	GGCC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	929
Bsp119I	TTCGAA	2 cut(s)	425, 641
Bsp1286I	GDGCHC	3 cut(s)	118, 822, 918
Bsp143I	GATC	3 cut(s)	220, 275, 465
BspACI	CCGC	4 cut(s)	279, 431, 456, 988
BspANI	GGCC	1 cut(s)	905
BspCNI	CTCAG	2 cut(s)	144, 816
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	7 cut(s)	160, 697, 819, 890, 891, 934, 981
BspMI	ACCTGC	2 cut(s)	256, 719
BspPI	GGATC	2 cut(s)	270, 460
BspT104I	TTCGAA	2 cut(s)	425, 641
BspT107I	GGYRCC	2 cut(s)	158, 817
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	3 cut(s)	220, 275, 465
Bst2UI	CCWGG	2 cut(s)	390, 576
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	814
BstBI	TTCGAA	2 cut(s)	425, 641
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	17, 131, 824
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	3 cut(s)	223, 278, 468
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	3 cut(s)	220, 275, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	390, 576
BstNSI	RCATGY	2 cut(s)	311, 385
BstSCI	CCNGG	4 cut(s)	388, 574, 928, 929
BstSLI	GKGCMC	1 cut(s)	822
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	905
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	2 cut(s)	116, 780
BtsIMutI	CAGTG	4 cut(s)	116, 139, 519, 780
BveI	ACCTGC	2 cut(s)	256, 719
Cac8I	GCNNGC	1 cut(s)	726
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	889, 933
Cfr9I	CCCGGG	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	159, 769
CspCI	CAANNNNNGTGG	2 cut(s)	882, 917
CviAII	CATG	7 cut(s)	302, 308, 317, 382, 700, 788, 869
CviJI	RGCY	9 cut(s)	536, 572, 646, 724, 740, 809, 848, 905, 928
CviKI_1	RGCY	9 cut(s)	536, 572, 646, 724, 740, 809, 848, 905, 928
CviQI	GTAC	2 cut(s)	159, 769
DdeI	CTNAG	3 cut(s)	17, 131, 824
DpnI	GATC	3 cut(s)	222, 277, 467
DpnII	GATC	3 cut(s)	220, 275, 465
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	889, 933
Eco88I	CYCGRG	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	889
EcoRII	CCWGG	2 cut(s)	388, 574
EcoT22I	ATGCAT	1 cut(s)	387
FaeI	CATG	7 cut(s)	305, 311, 320, 385, 703, 791, 872
FaqI	GGGAC	3 cut(s)	253, 902, 946
FatI	CATG	7 cut(s)	301, 307, 316, 381, 699, 787, 868
FauI	CCCGC	1 cut(s)	995
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	432, 446
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	432, 446
FspBI	CTAG	2 cut(s)	417, 960
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	2 cut(s)	432, 446
GsuI	CTGGAG	2 cut(s)	225, 558
HaeIII	GGCC	1 cut(s)	905
HapII	CCGG	1 cut(s)	930
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	7 cut(s)	305, 311, 320, 385, 703, 791, 872
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	4 cut(s)	322, 461, 524, 617
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	3 cut(s)	625, 743, 853
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	4 cut(s)	54, 650, 835, 883
Hpy188III	TCNNGA	3 cut(s)	7, 317, 670
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	2 cut(s)	481, 676
HpyAV	CCTTC	6 cut(s)	49, 83, 578, 838, 916, 965
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	6 cut(s)	179, 251, 305, 385, 728, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	3 cut(s)	17, 131, 824
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	7 cut(s)	305, 311, 320, 385, 703, 791, 872
HspAI	GCGC	1 cut(s)	448
KflI	GGGWCCC	1 cut(s)	889
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	220, 275, 465
LmnI	GCTCC	2 cut(s)	108, 577
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	417, 960
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	3 cut(s)	222, 277, 467
MboI	GATC	3 cut(s)	220, 275, 465
MboII	GAAGA	6 cut(s)	24, 197, 358, 572, 663, 730
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	3 cut(s)	118, 822, 918
MlyI	GAGTC	2 cut(s)	470, 626
MmeI	TCCRAC	3 cut(s)	238, 663, 1007
MnlI	CCTC	8 cut(s)	148, 182, 200, 583, 619, 670, 686, 821
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	3 cut(s)	143, 546, 924
MslI	CAYNNNNRTG	4 cut(s)	306, 339, 398, 883
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	4 cut(s)	390, 576, 930, 931
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	433, 665
MvaI	CCWGG	2 cut(s)	390, 576
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	2 cut(s)	930, 931
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	3 cut(s)	220, 275, 465
NlaIII	CATG	7 cut(s)	305, 311, 320, 385, 703, 791, 872
NlaIV	GGNNCC	7 cut(s)	160, 697, 819, 890, 891, 934, 981
NmuCI	GTSAC	1 cut(s)	731
NsbI	TGCGCA	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	2 cut(s)	311, 385
NspV	TTCGAA	2 cut(s)	425, 641
PagI	TCATGA	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	2 cut(s)	433, 665
PfeI	GAWTC	2 cut(s)	322, 524
Pfl23II	CGTACG	1 cut(s)	768
PkrI	GCNGC	2 cut(s)	433, 447
PleI	GAGTC	2 cut(s)	469, 625
PpsI	GAGTC	2 cut(s)	469, 625
Ppu21I	YACGTR	1 cut(s)	814
PpuMI	RGGWCCY	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	889
Psp6I	CCWGG	2 cut(s)	388, 574
PspGI	CCWGG	2 cut(s)	388, 574
PspLI	CGTACG	1 cut(s)	768
PspN4I	GGNNCC	7 cut(s)	160, 697, 819, 890, 891, 934, 981
PspPI	GGNCC	2 cut(s)	889, 933
PspPPI	RGGWCCY	1 cut(s)	889
PsrI	GAACNNNNNNTAC	2 cut(s)	752, 784
RsaI	GTAC	2 cut(s)	160, 770
RsaNI	GTAC	2 cut(s)	159, 769
RseI	CAYNNNNRTG	4 cut(s)	306, 339, 398, 883
SaqAI	TTAA	3 cut(s)	143, 546, 924
SatI	GCNGC	2 cut(s)	432, 446
Sau3AI	GATC	3 cut(s)	220, 275, 465
Sau96I	GGNCC	2 cut(s)	889, 933
SchI	GAGTC	2 cut(s)	470, 626
ScrFI	CCNGG	4 cut(s)	390, 576, 930, 931
SduI	GDGCHC	3 cut(s)	118, 822, 918
SfaNI	GCATC	1 cut(s)	394
SfuI	TTCGAA	2 cut(s)	425, 641
SinI	GGWCC	2 cut(s)	889, 933
SmaI	CCCGGG	1 cut(s)	931
SmiMI	CAYNNNNRTG	4 cut(s)	306, 339, 398, 883
SmlI	CTYRAG	2 cut(s)	7, 917
SmoI	CTYRAG	2 cut(s)	7, 917
SsiI	CCGC	4 cut(s)	279, 431, 456, 988
SspMI	CTAG	2 cut(s)	417, 960
StyD4I	CCNGG	4 cut(s)	388, 574, 928, 929
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	9 cut(s)	67, 83, 168, 219, 425, 464, 479, 641, 671
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	322, 524
Tru1I	TTAA	3 cut(s)	143, 546, 924
Tru9I	TTAA	3 cut(s)	143, 546, 924
TscAI	CASTG	4 cut(s)	123, 139, 519, 780
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	416, 498
TspGWI	ACGGA	2 cut(s)	689, 756
TspMI	CCCGGG	1 cut(s)	929
TspRI	CASTG	4 cut(s)	123, 139, 519, 780
VpaK11BI	GGWCC	2 cut(s)	889, 933
XapI	RAATTY	5 cut(s)	48, 76, 421, 436, 495
XceI	RCATGY	2 cut(s)	311, 385
XmaI	CCCGGG	1 cut(s)	929
XspI	CTAG	2 cut(s)	417, 960
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.