MD08G1119800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000559
Physical Location & Seq
Forward (+)
10991614 .. 10993428
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1119800.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGGGTTCATTCTATCCAGAATCTTTGCTTTTTTTACTAGCTCAATGTTCGGTTACAATTCGGATGAAAGCTCAATGTTCGGTTACAATTCGGATGAAAGCTCAATGTTTGGTTACAAGGAAGATGTAGGTGAAATAGTAAACACTTATAAAGATGCCTCTGAAAATCTAACAATTGAGGACCCAACGCGTGTACTTTTCTTCTTGGAGACGGACATTCATCCAGGCAAAACAATGAATTATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

4.22

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccII CGCG 1 cut(s) 190
AfaI GTAC 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 188
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 3 cut(s) 42, 72, 102
AluI AGCT 3 cut(s) 42, 72, 102
Alw26I GTCTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 225
BseGI GGATG 3 cut(s) 70, 100, 220
Bsh1236I CGCG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 70, 100, 220
BstFNI CGCG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstUI CGCG 1 cut(s) 190
BtsCI GGATG 3 cut(s) 70, 100, 220
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 194
CviJI RGCY 3 cut(s) 42, 72, 102
CviKI_1 RGCY 3 cut(s) 42, 72, 102
CviQI GTAC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 203
FaiI YATR 1 cut(s) 150
FokI GGATG 3 cut(s) 77, 107, 207
FspBI CTAG 1 cut(s) 39
HinfI GANTC 1 cut(s) 21
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 142, 194
Hpy188I TCNGA 3 cut(s) 64, 94, 163
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 142, 194
LpnPI CCDG 3 cut(s) 31, 210, 237
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 53, 83, 113
MboII GAAGA 2 cut(s) 134, 193
MfeI CAATTG 1 cut(s) 174
MluCI AATT 4 cut(s) 58, 88, 174, 238
MluI ACGCGT 1 cut(s) 188
MnlI CCTC 2 cut(s) 169, 172
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 181
PsiI TTATAA 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 225
SetI ASST 4 cut(s) 44, 74, 104, 133
SfaNI GCATC 1 cut(s) 145
SgeI CNNG 8 cut(s) 30, 51, 130, 201, 203, 217, 236, 237
SinI GGWCC 1 cut(s) 181
Sse9I AATT 4 cut(s) 58, 88, 174, 238
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 223
TasI AATT 4 cut(s) 58, 88, 174, 238
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 81, 111, 209
TspGWI ACGGA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 181
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.