Rh6CG468100

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000559
Physical Location & Seq
Reverse (-)
63987675 .. 63989566
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG468100.1

Sequence Viewer

Length: 1221 bp
ATGGGGTTCCATCTCCCACACATCTTTGCTTTTCTCACTTTCACACTGGTGGTAAGCCATGCTGCTCTATCACCTCAACTTTACTGGAATTCCGTCTTGCCAAACACACCGATGCCAAAAACTCTCAGTGAACTTCTGCAATCTGACTTCAGCGAAGAAAAGAGCACCTCAGTTGGGGTAGGGAAGGGTGGTGTGAGCGTTAACGCAGGTAAAGGAAAGCCCGCAGGCACCAACGTCAATGTTGGGAAGGGTGGTGTTCATGTTAACACTGGAAAAGGAAAGCCTGGAGGAACCAATGTGAATGTCGGAAAGGGTGGTGTGAATGTGCACGCTCCAAAAGGAAAGCCAGGGGGTGGTACCAATGTCAACGTAGGGGGAAAAGGTGGTGTTGGAGTGCAGACTGGAAAGCCCGGCAAGGGAACCAACGTGGGTGTTGGCAAAGGAGGAGTGCATGTAAGCACAGGTCACAAGGGAAAACCTGTATATGTTGGCGTAACACCAGGCAAAAGCCCATTTTTATACAAGTATGCTGCTACTGAGACTCAACTTCATGAAGATCCACAGATCGTACTTTTCTTCTTGGAGAAGGACATGCATCCTGGCACAAAGATGAACTTGCACTTCACTAAAAGTTCAGACACAGCAACTTTCCTTCCACGCAAAACTGCAGAGTCGATCCCTTTCTCATCTAATAAACTGCCCGAAATTTTGGACCAGTTTTCAGTGAAACCAGAATCTGCAGAAGCAGACACAATTAAGCAAACCATTGAAGAGTGTGAGAAACCAGGTATTAGAGGAGAGGAAAAATATTGTGCAACCTCTTTGGAGTCAATGATTGACTTCAGCACTTCCAAGCTTGGAAGGAACATTCAGGCAGTCTCAACAGAGGTTGAAAAGGGAACCACCATGCAGAAGTACACAATATTGCCTGGAGTGAAGAAGCTGGCAGGCGACAAATCCATTGCATGCCATAAGCAGAACTATGTGTATGCTGTCTTCTACTGCCATGCAACAACAACCACAAGAGCTTATATAGTGCCGCTGGAAGGTGCTGATGGAGTGAACGCTAAGGCAGTAGCAGTCTGCCACACGGACACCTCAGAATGGAACCCAAAGCATTTGGCCTTCCAAGTTCTCAAAGTTAAGCCAGGAACCATTCCCATCTGCCATTTTCTTCCCAGTGATCATATTGTCTGGGTTCCAAACCAGAAATCCACATAA

Protein Analysis

406

Amino Acids

43.12

Weight (kDa)

9.28

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 191 - 401 2.4e-91 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 227, 356
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 2 cut(s) 222, 1040
AclWI GGATC 2 cut(s) 551, 670
AcsI RAATTY 2 cut(s) 88, 705
AcuI CTGAAG 2 cut(s) 133, 826
AfaI GTAC 3 cut(s) 358, 570, 917
AfiI CCNNNNNNNGG 5 cut(s) 174, 353, 416, 1046, 1104
AgsI TTSAA 2 cut(s) 770, 893
AjnI CCWGG 7 cut(s) 283, 346, 499, 598, 784, 928, 1147
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 3 cut(s) 856, 943, 1028
AluI AGCT 3 cut(s) 856, 943, 1028
Alw21I GWGCWC 2 cut(s) 167, 330
Alw26I GTCTC 2 cut(s) 533, 883
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 2 cut(s) 551, 670
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 1 cut(s) 1122
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 62, 530
ApoI RAATTY 2 cut(s) 88, 705
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 712
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 63
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 330
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BanI GGYRCC 2 cut(s) 227, 356
BarI GAAGNNNNNNTAC 2 cut(s) 980, 1012
BbsI GAAGAC 1 cut(s) 988
Bbv12I GWGCWC 2 cut(s) 167, 330
BbvI GCAGC 2 cut(s) 49, 517
BccI CCATC 3 cut(s) 18, 1049, 1169
BciT130I CCWGG 7 cut(s) 285, 348, 501, 600, 786, 930, 1149
BclI TGATCA 1 cut(s) 1183
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 533, 883
BfmI CTRYAG 2 cut(s) 666, 738
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 3 cut(s) 63, 531, 1040
BlsI GCNGC 3 cut(s) 64, 532, 1041
Bme1390I CCNGG 8 cut(s) 285, 348, 411, 501, 600, 786, 930, 1149
Bme18I GGWCC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 9 cut(s) 8, 229, 292, 358, 421, 901, 1109, 1153, 1200
BmrFI CCNGG 8 cut(s) 285, 348, 411, 501, 600, 786, 930, 1149
BmrI ACTGGG 1 cut(s) 1173
BmsI GCATC 2 cut(s) 102, 604
BmuI ACTGGG 1 cut(s) 1173
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 2 cut(s) 306, 951
Bpu10I CCTNAGC 1 cut(s) 1068
BpuMI CCSGG 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 353, 416, 1046, 1104
Bse1I ACTGG 6 cut(s) 51, 89, 274, 406, 715, 1179
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 7 cut(s) 285, 348, 501, 600, 786, 930, 1149
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 595
BseLI CCNNNNNNNGG 5 cut(s) 174, 353, 416, 1046, 1104
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 4 cut(s) 139, 183, 528, 1113
BseNI ACTGG 6 cut(s) 51, 89, 274, 406, 715, 1179
BseRI GAGGAG 2 cut(s) 459, 810
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 49, 517
BsgI GTGCAG 1 cut(s) 416
BshFI GGCC 1 cut(s) 1124
BshNI GGYRCC 2 cut(s) 227, 356
BsiHKAI GWGCWC 2 cut(s) 167, 330
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 5 cut(s) 174, 353, 416, 1046, 1104
BsmAI GTCTC 2 cut(s) 533, 883
BsnI GGCC 1 cut(s) 1124
Bsp1286I GDGCHC 2 cut(s) 167, 330
Bsp143I GATC 4 cut(s) 556, 564, 675, 1183
BspACI CCGC 2 cut(s) 222, 1040
BspANI GGCC 1 cut(s) 1124
BspCNI CTCAG 4 cut(s) 138, 182, 529, 1112
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 9 cut(s) 8, 229, 292, 358, 421, 901, 1109, 1153, 1200
BspMAI CTGCAG 2 cut(s) 670, 742
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 2 cut(s) 551, 670
BspT107I GGYRCC 2 cut(s) 227, 356
BsrDI GCAATG 1 cut(s) 960
BsrI ACTGG 6 cut(s) 51, 89, 274, 406, 715, 1179
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 4 cut(s) 556, 564, 675, 1183
Bst2UI CCWGG 7 cut(s) 285, 348, 501, 600, 786, 930, 1149
Bst6I CTCTTC 1 cut(s) 765
BstC8I GCNNGC 6 cut(s) 222, 226, 330, 945, 949, 967
BstDEI CTNAG 5 cut(s) 125, 169, 537, 1068, 1099
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 4 cut(s) 559, 567, 678, 1186
BstMAI GTCTC 2 cut(s) 533, 883
BstMBI GATC 4 cut(s) 556, 564, 675, 1183
BstNI CCWGG 7 cut(s) 285, 348, 501, 600, 786, 930, 1149
BstNSI RCATGY 3 cut(s) 455, 595, 969
BstSCI CCNGG 8 cut(s) 283, 346, 409, 499, 598, 784, 928, 1147
BstSFI CTRYAG 2 cut(s) 666, 738
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 49, 517
BstV2I GAAGAC 1 cut(s) 988
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 1 cut(s) 1124
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 5 cut(s) 44, 133, 267, 729, 1186
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 6 cut(s) 222, 226, 330, 945, 949, 967
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 712
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 3 cut(s) 357, 569, 916
CviAII CATG 8 cut(s) 59, 260, 452, 551, 592, 907, 966, 1007
CviQI GTAC 3 cut(s) 357, 569, 916
DdeI CTNAG 5 cut(s) 125, 169, 537, 1068, 1099
DpnI GATC 4 cut(s) 558, 566, 677, 1185
DpnII GATC 4 cut(s) 556, 564, 675, 1183
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 712
Eco57I CTGAAG 2 cut(s) 133, 826
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 7 cut(s) 283, 346, 499, 598, 784, 928, 1147
EcoT22I ATGCAT 1 cut(s) 597
FaeI CATG 8 cut(s) 62, 263, 455, 554, 595, 910, 969, 1010
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FatI CATG 8 cut(s) 58, 259, 451, 550, 591, 906, 965, 1006
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 1 cut(s) 1183
Fnu4HI GCNGC 3 cut(s) 63, 531, 1040
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 63, 531, 1040
GluI GCNGC 3 cut(s) 63, 531, 1040
GsuI CTGGAG 2 cut(s) 306, 951
HaeIII GGCC 1 cut(s) 1124
HapII CCGG 1 cut(s) 411
Hin1II CATG 8 cut(s) 62, 263, 455, 554, 595, 910, 969, 1010
HincII GTYRAC 3 cut(s) 202, 265, 367
HindII GTYRAC 3 cut(s) 202, 265, 367
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 4 cut(s) 541, 671, 734, 827
HpaI GTTAAC 2 cut(s) 202, 265
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 7 cut(s) 131, 202, 265, 328, 367, 918, 1063
Hpy188I TCNGA 4 cut(s) 145, 308, 637, 1102
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 7 cut(s) 131, 202, 265, 328, 367, 918, 1063
HpyAV CCTTC 7 cut(s) 178, 241, 580, 662, 855, 1040, 1135
HpyCH4IV ACGT 3 cut(s) 234, 369, 426
HpyF3I CTNAG 5 cut(s) 125, 169, 537, 1068, 1099
HpySE526I ACGT 3 cut(s) 234, 369, 426
Hsp92II CATG 8 cut(s) 62, 263, 455, 554, 595, 910, 969, 1010
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 1183
KspAI GTTAAC 2 cut(s) 202, 265
Kzo9I GATC 4 cut(s) 556, 564, 675, 1183
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 2 cut(s) 49, 517
LweI GCATC 2 cut(s) 102, 604
MabI ACCWGGT 1 cut(s) 784
MaeII ACGT 3 cut(s) 234, 369, 426
MaeIII GTNAC 2 cut(s) 464, 493
MalI GATC 4 cut(s) 558, 566, 677, 1185
MboI GATC 4 cut(s) 556, 564, 675, 1183
MboII GAAGA 7 cut(s) 167, 566, 568, 782, 949, 988, 1166
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 2 cut(s) 167, 330
MluCI AATT 3 cut(s) 88, 705, 753
MlyI GAGTC 3 cut(s) 535, 680, 836
MmeI TCCRAC 2 cut(s) 286, 370
MnlI CCTC 9 cut(s) 84, 178, 281, 437, 788, 793, 829, 880, 1108
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 4 cut(s) 201, 264, 756, 1143
MslI CAYNNNNRTG 3 cut(s) 47, 110, 608
MspA1I CMGCKG 1 cut(s) 1042
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 8 cut(s) 285, 348, 411, 501, 600, 786, 930, 1149
MvaI CCWGG 7 cut(s) 285, 348, 501, 600, 786, 930, 1149
NciI CCSGG 1 cut(s) 411
NdeII GATC 4 cut(s) 556, 564, 675, 1183
NlaIII CATG 8 cut(s) 62, 263, 455, 554, 595, 910, 969, 1010
NlaIV GGNNCC 9 cut(s) 8, 229, 292, 358, 421, 901, 1109, 1153, 1200
NmuCI GTSAC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 3 cut(s) 455, 595, 969
OliI CACNNNNGTG 1 cut(s) 47
PaeI GCATGC 1 cut(s) 969
PagI TCATGA 1 cut(s) 550
PfeI GAWTC 1 cut(s) 734
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 3 cut(s) 64, 532, 1041
PleI GAGTC 3 cut(s) 535, 679, 835
PpsI GAGTC 3 cut(s) 535, 679, 835
Psp6I CCWGG 7 cut(s) 283, 346, 499, 598, 784, 928, 1147
PspGI CCWGG 7 cut(s) 283, 346, 499, 598, 784, 928, 1147
PspN4I GGNNCC 9 cut(s) 8, 229, 292, 358, 421, 901, 1109, 1153, 1200
PspPI GGNCC 1 cut(s) 712
PstI CTGCAG 2 cut(s) 670, 742
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 358, 570, 917
RsaNI GTAC 3 cut(s) 357, 569, 916
RseI CAYNNNNRTG 3 cut(s) 47, 110, 608
SaqAI TTAA 4 cut(s) 201, 264, 756, 1143
SatI GCNGC 3 cut(s) 63, 531, 1040
Sau3AI GATC 4 cut(s) 556, 564, 675, 1183
Sau96I GGNCC 1 cut(s) 712
SchI GAGTC 3 cut(s) 535, 680, 836
ScrFI CCNGG 8 cut(s) 285, 348, 411, 501, 600, 786, 930, 1149
SduI GDGCHC 2 cut(s) 167, 330
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 2 cut(s) 102, 604
SfcI CTRYAG 2 cut(s) 666, 738
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 3 cut(s) 47, 110, 608
SphI GCATGC 1 cut(s) 969
Sse9I AATT 3 cut(s) 88, 705, 753
SsiI CCGC 2 cut(s) 222, 1040
SspI AATATT 2 cut(s) 809, 924
StyD4I CCNGG 8 cut(s) 283, 346, 409, 499, 598, 784, 928, 1147
TaiI ACGT 3 cut(s) 237, 372, 429
TaqI TCGA 1 cut(s) 674
TasI AATT 3 cut(s) 88, 705, 753
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 1042
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 4 cut(s) 201, 264, 756, 1143
Tru9I TTAA 4 cut(s) 201, 264, 756, 1143
TscAI CASTG 5 cut(s) 51, 133, 274, 729, 1186
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 62, 530
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 4 cut(s) 248, 539, 567, 626
TspGWI ACGGA 2 cut(s) 82, 1106
TspRI CASTG 5 cut(s) 51, 133, 274, 729, 1186
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 2 cut(s) 88, 705
XceI RCATGY 3 cut(s) 455, 595, 969
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.