Rh5BG347500

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000559
Physical Location & Seq
Reverse (-)
53163715 .. 53165543
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG347500.1

Sequence Viewer

Length: 849 bp
ATGCACCGTAAATGTCCAATATTAATGCTTTCTTTGTTGTTGACACGTACAGACAACTGGATCGAAGGGAAAAGTAGATACACTGGGTTCAGCAAGGACGATCTAAACATCAACACCTTGCTAGTTTCCGGATCTGCATTTCCAACTATTGGTAAAGATAGCTATGCCGAGGCCGCCTCCGGAAAAATCCAAGTGGAGCCAGATGTGACTACTTTCTTTTTAGAAAAGGATCTGCGACTGGGGAAGAAGATGACCCTGCACTTCCCCAAAACCACAGTTGCGGCCGAGTTCTTGCCTCGTAAAGTCGCCAAGTCCATACCCTTTTCGAAGAGCAAGCTGCCGCAGATTCTCAACCACTTTGCGGTGAAACCCAACTCCGTGGAAGCAGAAGTGATCAAACAGACGATCGAAGACTGCGAGGCGCCGAGCATCAAAGGGGAAGATAAGTACTGCGCCACGTCGTTGGAATCCTTGGTCGATTTTACCGTTTCGAAGCTCGGTAAATACGTGCAGGTGTATTCCACAGAGGTCGAAAACGAAAACAAACAGGAATATAAGATTGGAAAAGGAGCTGTGCAGCGAATTGGAGACAGGTCAGTGGTTTGTCACAAGCAGAAGTACGTGTATGCGGTTTTTTATTGCCATGAAATTCACTCAACTAGGGCTTACGTGGTTCCTTTGGTGGGTGCTGATGGAACTAAAGCTGAAGCAGTAGCTGTTTGCCACACTGATACAAGAACATGGAACAATAAGCATTTTGCTTTCCAGGCCCTCAAAATAAAGCCGGGAACACTTCCCATTTGTCACTTCTTGCCTAGTGGAAACCTTGTGTGGGTTCCAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

282

Amino Acids

31.54

Weight (kDa)

9.08

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 72 - 280 2.7e-85 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 149
AccIII TCCGGA 2 cut(s) 128, 179
AciI CCGC 5 cut(s) 174, 281, 341, 362, 629
AclWI GGATC 3 cut(s) 68, 139, 237
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 3 cut(s) 49, 449, 620
AfiI CCNNNNNNNGG 4 cut(s) 149, 361, 683, 832
AflIII ACRYGT 2 cut(s) 44, 621
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 1 cut(s) 765
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 6 cut(s) 162, 337, 496, 572, 704, 716
AluI AGCT 6 cut(s) 162, 337, 496, 572, 704, 716
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 3 cut(s) 68, 139, 237
AlwNI CAGNNNCTG 1 cut(s) 716
Aor13HI TCCGGA 2 cut(s) 128, 179
AoxI GGCC 3 cut(s) 171, 282, 768
ApeKI GCWGC 2 cut(s) 337, 577
ApoI RAATTY 1 cut(s) 648
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 2 cut(s) 424, 455
AspS9I GGNCC 1 cut(s) 769
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 1 cut(s) 376
AsuII TTCGAA 2 cut(s) 326, 491
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 324, 589
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 767
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 3 cut(s) 122, 660, 816
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 5 cut(s) 174, 282, 338, 341, 578
BlsI GCNGC 5 cut(s) 175, 283, 339, 342, 579
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 767, 786
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 769
BmiI GGNNCC 4 cut(s) 198, 423, 675, 837
BmrFI CCNGG 2 cut(s) 767, 786
BmrI ACTGGG 2 cut(s) 93, 248
BmsI GCATC 1 cut(s) 438
BmuI ACTGGG 2 cut(s) 93, 248
BpiI GAAGAC 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu14I TTCGAA 2 cut(s) 326, 491
BpuMI CCSGG 1 cut(s) 786
BsaAI YACGTR 4 cut(s) 47, 508, 622, 670
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 168, 378, 471
BsaWI WCCGGW 2 cut(s) 128, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 361, 683, 832
Bse1I ACTGG 3 cut(s) 62, 88, 243
BseAI TCCGGA 2 cut(s) 128, 179
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 3 cut(s) 168, 378, 471
BseLI CCNNNNNNNGG 4 cut(s) 149, 361, 683, 832
BseNI ACTGG 3 cut(s) 62, 88, 243
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 324, 589
BsgI GTGCAG 3 cut(s) 242, 530, 596
Bsh1285I CGRYCG 2 cut(s) 285, 408
BshFI GGCC 3 cut(s) 173, 284, 770
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 2 cut(s) 285, 408
BsiSI CCGG 3 cut(s) 129, 180, 785
BslI CCNNNNNNNGG 4 cut(s) 149, 361, 683, 832
BsmAI GTCTC 1 cut(s) 582
BsnI GGCC 3 cut(s) 173, 284, 770
Bsp119I TTCGAA 2 cut(s) 326, 491
Bsp13I TCCGGA 2 cut(s) 128, 179
Bsp143I GATC 6 cut(s) 60, 100, 131, 229, 393, 405
BspACI CCGC 5 cut(s) 174, 281, 341, 362, 629
BspANI GGCC 3 cut(s) 173, 284, 770
BspEI TCCGGA 2 cut(s) 128, 179
BspLI GGNNCC 4 cut(s) 198, 423, 675, 837
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 3 cut(s) 68, 139, 237
BspQI GCTCTTC 1 cut(s) 323
BspT104I TTCGAA 2 cut(s) 326, 491
BspT107I GGYRCC 1 cut(s) 421
BsrI ACTGG 3 cut(s) 62, 88, 243
BssECI CCNNGG 3 cut(s) 168, 378, 471
BssMI GATC 6 cut(s) 60, 100, 131, 229, 393, 405
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 8, 277, 487
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 422
BstBAI YACGTR 4 cut(s) 47, 508, 622, 670
BstBI TTCGAA 2 cut(s) 326, 491
BstC8I GCNNGC 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 424, 455
BstKTI GATC 6 cut(s) 63, 103, 134, 232, 396, 408
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 6 cut(s) 60, 100, 131, 229, 393, 405
BstMCI CGRYCG 2 cut(s) 285, 408
BstMWI GCNNNNNNNGC 2 cut(s) 173, 767
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 2 cut(s) 765, 784
BstV1I GCAGC 2 cut(s) 324, 589
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 2 cut(s) 131, 229
BstXI CCANNNNNNTGG 2 cut(s) 379, 463
BstYI RGATCY 2 cut(s) 131, 229
BstZI CGGCCG 1 cut(s) 282
BsuRI GGCC 3 cut(s) 173, 284, 770
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 459
BtsIMutI CAGTG 3 cut(s) 81, 603, 726
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 2 cut(s) 424, 455
Cfr13I GGNCC 1 cut(s) 769
Csp6I GTAC 3 cut(s) 48, 448, 619
CviAII CATG 2 cut(s) 644, 741
CviQI GTAC 3 cut(s) 48, 448, 619
DinI GGCGCC 1 cut(s) 423
DpnI GATC 6 cut(s) 62, 102, 133, 231, 395, 407
DpnII GATC 6 cut(s) 60, 100, 131, 229, 393, 405
EaeI YGGCCR 1 cut(s) 282
EagI CGGCCG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EclXI CGGCCG 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 471
Eco52I CGGCCG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 471
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 2 cut(s) 647, 744
FaiI YATR 6 cut(s) 165, 317, 555, 627, 645, 742
FatI CATG 2 cut(s) 643, 740
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 174, 282, 338, 341, 578
Fsp4HI GCNGC 5 cut(s) 174, 282, 338, 341, 578
FspBI CTAG 3 cut(s) 122, 660, 816
GlaI GCGC 2 cut(s) 423, 454
GluI GCNGC 5 cut(s) 174, 282, 338, 341, 578
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 3 cut(s) 173, 284, 770
HapII CCGG 3 cut(s) 129, 180, 785
HhaI GCGC 2 cut(s) 424, 455
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 647, 744
Hin6I GCGC 2 cut(s) 422, 453
HinP1I GCGC 2 cut(s) 422, 453
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 346, 467
HpaII CCGG 3 cut(s) 129, 180, 785
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 129, 180
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 8, 277, 487
HpyCH4IV ACGT 5 cut(s) 46, 458, 507, 621, 669
HpyCH4V TGCA 5 cut(s) 4, 137, 259, 511, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 767
HpySE526I ACGT 5 cut(s) 46, 458, 507, 621, 669
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 647, 744
HspAI GCGC 2 cut(s) 422, 453
KasI GGCGCC 1 cut(s) 421
Kpn2I TCCGGA 2 cut(s) 128, 179
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 6 cut(s) 60, 100, 131, 229, 393, 405
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 2 cut(s) 196, 569
Lsp1109I GCAGC 2 cut(s) 324, 589
LweI GCATC 1 cut(s) 438
MaeI CTAG 3 cut(s) 122, 660, 816
MaeII ACGT 5 cut(s) 46, 458, 507, 621, 669
MaeIII GTNAC 3 cut(s) 205, 605, 803
MalI GATC 6 cut(s) 62, 102, 133, 231, 395, 407
MboI GATC 6 cut(s) 60, 100, 131, 229, 393, 405
MboII GAAGA 5 cut(s) 256, 259, 340, 422, 452
MflI RGATCY 2 cut(s) 131, 229
MluCI AATT 2 cut(s) 582, 648
Mly113I GGCGCC 1 cut(s) 422
MmeI TCCRAC 2 cut(s) 167, 444
MnlI CCTC 6 cut(s) 163, 187, 306, 412, 520, 782
MroI TCCGGA 2 cut(s) 128, 179
MseI TTAA 1 cut(s) 23
MspI CCGG 3 cut(s) 129, 180, 785
MspR9I CCNGG 2 cut(s) 767, 786
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 2 cut(s) 173, 767
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 1 cut(s) 786
NdeII GATC 6 cut(s) 60, 100, 131, 229, 393, 405
NlaIII CATG 2 cut(s) 647, 744
NlaIV GGNNCC 4 cut(s) 198, 423, 675, 837
NmeAIII GCCGAG 3 cut(s) 193, 310, 450
NmuCI GTSAC 3 cut(s) 205, 605, 803
NspV TTCGAA 2 cut(s) 326, 491
PaqCI CACCTGC 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 3 cut(s) 414, 483, 504
PfeI GAWTC 2 cut(s) 346, 467
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 5 cut(s) 175, 283, 339, 342, 579
Ple19I CGATCG 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 425
Ppu21I YACGTR 4 cut(s) 47, 508, 622, 670
PshBI ATTAAT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 198, 423, 675, 837
PspPI GGNCC 1 cut(s) 769
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 2 cut(s) 131, 229
PvuI CGATCG 1 cut(s) 408
RsaI GTAC 3 cut(s) 49, 449, 620
RsaNI GTAC 3 cut(s) 48, 448, 619
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 5 cut(s) 174, 282, 338, 341, 578
Sau3AI GATC 6 cut(s) 60, 100, 131, 229, 393, 405
Sau96I GGNCC 1 cut(s) 769
ScaI AGTACT 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 767, 786
SfaNI GCATC 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 423
SfuI TTCGAA 2 cut(s) 326, 491
Sse9I AATT 2 cut(s) 582, 648
SsiI CCGC 5 cut(s) 174, 281, 341, 362, 629
SspDI GGCGCC 1 cut(s) 421
SspI AATATT 1 cut(s) 21
SspMI CTAG 3 cut(s) 122, 660, 816
StyD4I CCNGG 2 cut(s) 765, 784
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 8, 277, 487
TaiI ACGT 5 cut(s) 49, 461, 510, 624, 672
TaqI TCGA 6 cut(s) 63, 326, 408, 477, 491, 531
TasI AATT 2 cut(s) 582, 648
TatI WGTACW 1 cut(s) 447
TauI GCSGC 3 cut(s) 176, 284, 343
TfiI GAWTC 2 cut(s) 346, 467
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 3 cut(s) 88, 603, 733
TseFI GTSAC 3 cut(s) 205, 605, 803
TseI GCWGC 2 cut(s) 337, 577
Tsp45I GTSAC 3 cut(s) 205, 605, 803
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 3 cut(s) 88, 603, 733
Van91I CCANNNNNTGG 1 cut(s) 149
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 1 cut(s) 648
XspI CTAG 3 cut(s) 122, 660, 816
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.