Prupe.1G465600_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Reverse (-)
38843108 .. 38847965
4858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G465600.1

Sequence Viewer

Length: 993 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCGGTGGCACTGGCAAACCATGCTGCTCAACCAGCAGCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGAACTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACAAATATCATGAATGCTGTTGGGAATGGAAAGCCAACGGACCACAACGGCAAACCTAAAATGAAGGCATTGTTTAGCGGATACACAATTCAAGTACAGTATGCAGGAGTTCCTAATTCTGACAATCAACTCCAATATTATAAAAACATGACTATTTTCTTCTTGGGGAAGGACATGCGCCTTGGCGCAACAATGAACTTCCAATTCACTAGAAATTCAAACACGGCTACTTTCCTGCCACGTGAAAGTGCTCAATCGATCCCCTTCTCCTCTAACAAACTATCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGAAAACAATCGAAGAGTGTGAAGCTCCAGGCATTAAGGGAGAGGAAAGATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCCAAGCTTAGAACAAGAAACGTTCAAGCAATCTCGACTGAGGTATTGGAAAAAGGAGCCACCATGTCCATGCACAAGTATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAGACAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGTGAAGGTTAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGAACCCAAAGCATTTGGCCTTCCAAATCCTCAAAGTTAAGCCCGGAACCATTCCCATCTGCCATTTCCTTTCCACAGATGCTATTGCCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

331

Amino Acids

36.55

Weight (kDa)

9.13

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AarI CACCTGC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 689
AciI CCGC 2 cut(s) 47, 255
AclI AACGTT 1 cut(s) 630
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 391, 465
AcuI CTGAAG 1 cut(s) 728
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 273
AgsI TTSAA 4 cut(s) 269, 396, 472, 635
AjnI CCWGG 2 cut(s) 544, 965
AluBI AGCT 4 cut(s) 83, 542, 616, 800
AluI AGCT 4 cut(s) 83, 542, 616, 800
Alw21I GWGCWC 2 cut(s) 179, 430
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 4 cut(s) 44, 68, 80, 797
ApoI RAATTY 2 cut(s) 391, 465
AspLEI GCGC 3 cut(s) 357, 365, 575
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 702, 921
AsuHPI GGTGA 2 cut(s) 734, 844
AvaII GGWCC 1 cut(s) 217
BbrPI CACGTG 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 179, 430
BbvI GCAGC 4 cut(s) 55, 56, 92, 809
BccI CCATC 4 cut(s) 821, 860, 867, 941
BceAI ACGGC 2 cut(s) 241, 417
BciT130I CCWGG 2 cut(s) 546, 967
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 2 cut(s) 702, 921
BfaI CTAG 3 cut(s) 41, 387, 863
BfuAI ACCTGC 1 cut(s) 710
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 4 cut(s) 45, 69, 81, 798
BlsI GCNGC 4 cut(s) 46, 70, 82, 799
Bme1390I CCNGG 4 cut(s) 546, 702, 921, 967
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 4 cut(s) 667, 881, 925, 972
BmrFI CCNGG 4 cut(s) 546, 702, 921, 967
BmsI GCATC 3 cut(s) 111, 157, 946
BpmI CTGGAG 1 cut(s) 528
BpuMI CCSGG 2 cut(s) 702, 921
Bsa29I ATCGAT 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 358, 966
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 2 cut(s) 60, 98
BseBI CCWGG 2 cut(s) 546, 967
BseCI ATCGAT 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 358, 966
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 49, 639
BseNI ACTGG 2 cut(s) 60, 98
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 4 cut(s) 55, 56, 92, 809
BshFI GGCC 1 cut(s) 896
BshVI ATCGAT 1 cut(s) 434
BsiHKAI GWGCWC 2 cut(s) 179, 430
BsiSI CCGG 2 cut(s) 701, 921
BslFI GGGAC 1 cut(s) 717
BsmFI GGGAC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 179, 430
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 2 cut(s) 47, 255
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 2 cut(s) 48, 640
BspDI ATCGAT 1 cut(s) 434
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 4 cut(s) 667, 881, 925, 972
BspMI ACCTGC 1 cut(s) 710
BspPI GGATC 1 cut(s) 430
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 2 cut(s) 358, 966
BssMI GATC 1 cut(s) 435
BssNAI GTATAC 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 358
Bst1107I GTATAC 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 546, 967
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 35, 617, 648
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 3 cut(s) 357, 365, 575
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 2 cut(s) 546, 967
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 4 cut(s) 544, 700, 919, 965
BstV1I GCAGC 4 cut(s) 55, 56, 92, 809
BstZ17I GTATAC 1 cut(s) 690
Bsu15I ATCGAT 1 cut(s) 434
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 896
BsuTUI ATCGAT 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 3 cut(s) 53, 142, 489
BveI ACCTGC 1 cut(s) 710
CciI TCATGA 1 cut(s) 186
CfoI GCGC 3 cut(s) 357, 365, 575
Cfr13I GGNCC 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 434
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 8 cut(s) 65, 187, 325, 352, 673, 679, 779, 990
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 3 cut(s) 35, 617, 648
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 728
Eco72I CACGTG 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 544, 965
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 8 cut(s) 68, 190, 328, 355, 676, 682, 782, 993
FaqI GGGAC 1 cut(s) 717
FatI CATG 8 cut(s) 64, 186, 324, 351, 672, 678, 778, 989
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 4 cut(s) 45, 69, 81, 798
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 45, 69, 81, 798
FspBI CTAG 3 cut(s) 41, 387, 863
GlaI GCGC 3 cut(s) 356, 364, 574
GluI GCNGC 4 cut(s) 45, 69, 81, 798
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 896
HapII CCGG 2 cut(s) 701, 921
HhaI GCGC 3 cut(s) 357, 365, 575
Hin1II CATG 8 cut(s) 68, 190, 328, 355, 676, 682, 782, 993
Hin6I GCGC 3 cut(s) 355, 363, 573
HinP1I GCGC 3 cut(s) 355, 363, 573
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 155, 587
HpaII CCGG 2 cut(s) 701, 921
HphI GGTGA 2 cut(s) 734, 844
Hpy166II GTNNAC 2 cut(s) 140, 690
Hpy188I TCNGA 4 cut(s) 298, 463, 874, 975
Hpy188III TCNNGA 4 cut(s) 152, 187, 643, 863
Hpy8I GTNNAC 2 cut(s) 140, 690
HpyAV CCTTC 5 cut(s) 235, 340, 451, 829, 907
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 418, 630
HpyCH4V TGCA 5 cut(s) 148, 281, 682, 782, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 3 cut(s) 35, 617, 648
HpySE526I ACGT 2 cut(s) 418, 630
Hsp92II CATG 8 cut(s) 68, 190, 328, 355, 676, 682, 782, 993
HspAI GCGC 3 cut(s) 355, 363, 573
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 547, 665
Lsp1109I GCAGC 4 cut(s) 55, 56, 92, 809
LweI GCATC 3 cut(s) 111, 157, 946
MaeI CTAG 3 cut(s) 41, 387, 863
MaeII ACGT 2 cut(s) 418, 630
MaeIII GTNAC 2 cut(s) 722, 847
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 4 cut(s) 179, 328, 542, 721
MhlI GDGCHC 2 cut(s) 179, 430
MluCI AATT 6 cut(s) 264, 292, 380, 391, 465, 513
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 4 cut(s) 457, 553, 643, 917
MseI TTAA 4 cut(s) 516, 552, 840, 915
MslI CAYNNNNRTG 3 cut(s) 119, 677, 874
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 701, 921
MspR9I CCNGG 4 cut(s) 546, 702, 921, 967
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 546, 967
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 2 cut(s) 702, 921
NdeII GATC 1 cut(s) 435
NlaIII CATG 8 cut(s) 68, 190, 328, 355, 676, 682, 782, 993
NlaIV GGNNCC 4 cut(s) 667, 881, 925, 972
NmuCI GTSAC 1 cut(s) 722
NspI RCATGY 1 cut(s) 355
PagI TCATGA 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 710
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 587
PflFI GACNNNGTC 1 cut(s) 728
PkrI GCNGC 4 cut(s) 46, 70, 82, 799
PleI GAGTC 1 cut(s) 149
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 419
PsiI TTATAA 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 630
Psp6I CCWGG 2 cut(s) 544, 965
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 2 cut(s) 544, 965
PspN4I GGNNCC 4 cut(s) 667, 881, 925, 972
PspPI GGNCC 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 3 cut(s) 119, 677, 874
SaqAI TTAA 4 cut(s) 516, 552, 840, 915
SatI GCNGC 4 cut(s) 45, 69, 81, 798
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 546, 702, 921, 967
SduI GDGCHC 2 cut(s) 179, 430
SfaNI GCATC 3 cut(s) 111, 157, 946
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 3 cut(s) 119, 677, 874
Sse9I AATT 6 cut(s) 264, 292, 380, 391, 465, 513
SsiI CCGC 2 cut(s) 47, 255
SspI AATATT 1 cut(s) 314
SspMI CTAG 3 cut(s) 41, 387, 863
StyD4I CCNGG 4 cut(s) 544, 700, 919, 965
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 2 cut(s) 421, 633
TaqI TCGA 3 cut(s) 434, 528, 644
TasI AATT 6 cut(s) 264, 292, 380, 391, 465, 513
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 4 cut(s) 516, 552, 840, 915
Tru9I TTAA 4 cut(s) 516, 552, 840, 915
TscAI CASTG 3 cut(s) 60, 142, 489
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 4 cut(s) 44, 68, 80, 797
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 4 cut(s) 180, 203, 254, 386
TspGWI ACGGA 2 cut(s) 91, 230
TspRI CASTG 3 cut(s) 60, 142, 489
Tth111I GACNNNGTC 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 2 cut(s) 391, 465
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 3 cut(s) 41, 387, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.