Rh1CG246400

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000559
Physical Location & Seq
Reverse (-)
50825690 .. 50837963
12274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG246400.1

Sequence Viewer

Length: 489 bp
ATGATGAAGTTCAGATCTGAGACGCCCCTTTTTCTGGAGTTTGTTTCTACTCCATTCCATGAAAGGCCAAGAGAAGTATATGCTGTGTGCTACTCTGAACTGATATATTGGTCAGACGGTGAAAGGAGTTATGCGCGGGTTGGAAAGGATGCTGTAAATATTAGACCACAAGCATGCTATCGTGTCGGTACAGTCTATGCTGCCTCTAAAGAAGAAATCAAAGTGGAGCCAGGTTTGACTACATACTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACAATGCGATTCTTGAAACCCATGAGTAACAAGGTAGCTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTGGAGTGAAACCCAAGTCACCGGTTGCAGAAATAATGAAAAGCACAATCAAAGAGTGCGAGGCACCGGCCATTAAAGGCGAAGACAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

162

Amino Acids

18.44

Weight (kDa)

9.28

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 82 - 162 7.9e-20 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 457
AccII CGCG 1 cut(s) 136
AciI CCGC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 190, 485
AfiI CCNNNNNNNGG 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 2 cut(s) 301, 363
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 2 cut(s) 65, 462
ApeKI GCWGC 2 cut(s) 200, 366
ApoI RAATTY 1 cut(s) 381
AsiGI ACCGGT 1 cut(s) 415
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 131, 295, 405
BanI GGYRCC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 187, 378
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 14
BglII AGATCT 2 cut(s) 14, 259
BisI GCNGC 2 cut(s) 201, 367
BlsI GCNGC 2 cut(s) 202, 368
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 228, 459
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 415, 460
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 187, 378
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 67, 464
BshNI GGYRCC 1 cut(s) 457
BshTI ACCGGT 1 cut(s) 415
BsiSI CCGG 2 cut(s) 416, 461
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 67, 464
Bsp143I GATC 2 cut(s) 14, 259
BspACI CCGC 1 cut(s) 136
BspANI GGCC 2 cut(s) 67, 464
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 228, 459
BspT107I GGYRCC 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 415, 460
BssAI RCCGGY 2 cut(s) 415, 460
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 14, 259
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 119, 193, 283
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 136
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 2 cut(s) 17, 262
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 14, 259
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 187, 378
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 14, 259
BstYI RGATCY 2 cut(s) 14, 259
BsuRI GGCC 2 cut(s) 67, 464
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 136
Cfr10I RCCGGY 2 cut(s) 415, 460
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 189, 484
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 3 cut(s) 59, 174, 307
CviJI RGCY 4 cut(s) 67, 229, 323, 464
CviKI_1 RGCY 4 cut(s) 67, 229, 323, 464
CviQI GTAC 2 cut(s) 189, 484
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 16, 261
DpnII GATC 2 cut(s) 14, 259
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 62, 177, 310
FatI CATG 3 cut(s) 58, 173, 306
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 201, 367
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 201, 367
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 201, 367
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 67, 464
HapII CCGG 2 cut(s) 416, 461
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 62, 177, 310
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 1 cut(s) 294
HpaII CCGG 2 cut(s) 416, 461
HphI GGTGA 3 cut(s) 131, 295, 405
Hpy188I TCNGA 4 cut(s) 14, 19, 97, 115
Hpy188III TCNNGA 2 cut(s) 35, 298
HpyCH4III ACNGT 3 cut(s) 119, 193, 283
HpyCH4V TGCA 2 cut(s) 344, 422
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 62, 177, 310
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 2 cut(s) 14, 259
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 20, 216, 243, 390, 429, 474
Lsp1109I GCAGC 2 cut(s) 187, 378
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 3 cut(s) 283, 311, 411
MalI GATC 2 cut(s) 16, 261
MboI GATC 2 cut(s) 14, 259
MboII GAAGA 3 cut(s) 224, 254, 488
MflI RGATCY 2 cut(s) 14, 259
MluCI AATT 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 214, 342, 448
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 172
MspI CCGG 2 cut(s) 416, 461
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 136
NdeII GATC 2 cut(s) 14, 259
NlaIII CATG 3 cut(s) 62, 177, 310
NlaIV GGNNCC 2 cut(s) 228, 459
NmuCI GTSAC 2 cut(s) 283, 411
NspI RCATGY 1 cut(s) 177
PaeI GCATGC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 415
PkrI GCNGC 2 cut(s) 202, 368
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 228, 459
PsuI RGATCY 2 cut(s) 14, 259
RsaI GTAC 2 cut(s) 190, 485
RsaNI GTAC 2 cut(s) 189, 484
RseI CAYNNNNRTG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 201, 367
Sau3AI GATC 2 cut(s) 14, 259
ScaI AGTACT 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 231
SetI ASST 3 cut(s) 235, 321, 325
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 172
SphI GCATGC 1 cut(s) 177
Sse9I AATT 1 cut(s) 381
SsiI CCGC 1 cut(s) 136
SspI AATATT 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 119, 193, 283
TasI AATT 1 cut(s) 381
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 2 cut(s) 283, 411
TseI GCWGC 2 cut(s) 200, 366
Tsp45I GTSAC 2 cut(s) 283, 411
TspDTI ATGAA 3 cut(s) 20, 75, 446
XapI RAATTY 1 cut(s) 381
XceI RCATGY 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.