Prupe.1G477400_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39953588 .. 39955655
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G477400.1

Sequence Viewer

Length: 1260 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCGGTTGCACTGGCAAACAATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCAAACCTGAAATTTTCCCATTGCAGGGCAATAGAGTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGCCAATAGCTTTTACACTCAAACCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGGCAATAGCCATTATTCTCAAACAGGGTATGCAAAAGGTCCTCCTCCTCCTCCTAAAATTTTCCCATTTTCAGGTTACAGTCGAAAAAGGTATGGAGGAAGTCCTCCTCCTCCTTCTCCATTCGTTCAAAAAGACTATGGACAGAACGATAAACATTACGTTCAAAAAAACTATGGAAAAGTTCCTCCTCCACCTGACAATCAACTACTCCATTATAAAGACTTGGCTATTTTCTTCTTCGAGAAGGACATGCGCCCTGGCGCAACAATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTCTAAGAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCCTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCAACGGAGGTATTGGAAGAAGGAGCCACCAAGTACATGCACAACTATACAACAATGCCGGGACTGAAGAAGTTGGAAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTTTCTGCCATGCAATAAAACAAACAGCAGCTTATGTTCTCTCCCTGAAAGCCGATGATGGGATGAAGGTGAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGACCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACCACTCCCATCTGCCATTTCCTTTCCACTGATGCTATTGCCTGGGTTCCAAAACACAAGTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

420

Amino Acids

46.99

Weight (kDa)

8.73

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 231, 315, 585
AccII CGCG 1 cut(s) 687
AciI CCGC 1 cut(s) 47
AclI AACGTT 2 cut(s) 897, 1179
AclWI GGATC 1 cut(s) 697
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 6 cut(s) 186, 274, 358, 426, 658, 732
AcuI CTGAAG 1 cut(s) 995
AfaI GTAC 1 cut(s) 944
AfiI CCNNNNNNNGG 4 cut(s) 199, 200, 440, 1095
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 5 cut(s) 497, 533, 663, 739, 902
AjnI CCWGG 3 cut(s) 625, 811, 1232
AluBI AGCT 4 cut(s) 294, 809, 883, 1067
AluI AGCT 4 cut(s) 294, 809, 883, 1067
Alw21I GWGCWC 1 cut(s) 697
AlwI GGATC 1 cut(s) 697
AoxI GGCC 2 cut(s) 285, 814
ApeKI GCWGC 3 cut(s) 44, 68, 1064
ApoI RAATTY 6 cut(s) 186, 274, 358, 426, 658, 732
ArsI GACNNNNNNTTYG 1 cut(s) 1235
AspLEI GCGC 3 cut(s) 624, 632, 842
AspS9I GGNCC 2 cut(s) 407, 1147
AsuC2I CCSGG 2 cut(s) 969, 1188
AsuHPI GGTGA 2 cut(s) 1001, 1117
AsuII TTCGAA 1 cut(s) 878
AvaII GGWCC 2 cut(s) 407, 1147
BalI TGGCCA 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 55, 56, 1076
BccI CCATC 6 cut(s) 259, 343, 1088, 1127, 1134, 1208
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 3 cut(s) 627, 813, 1234
BcnI CCSGG 2 cut(s) 969, 1188
BfaI CTAG 3 cut(s) 41, 654, 1130
BfrI CTTAAG 1 cut(s) 818
BglII AGATCT 1 cut(s) 128
BisI GCNGC 3 cut(s) 45, 69, 1065
BlsI GCNGC 3 cut(s) 46, 70, 1066
Bme1390I CCNGG 5 cut(s) 627, 813, 969, 1188, 1234
Bme18I GGWCC 2 cut(s) 407, 1147
BmgT120I GGNCC 2 cut(s) 407, 1147
BmiI GGNNCC 5 cut(s) 934, 1148, 1149, 1192, 1239
BmrFI CCNGG 5 cut(s) 627, 813, 969, 1188, 1234
BmsI GCATC 3 cut(s) 111, 157, 1213
BpmI CTGGAG 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 969, 1188
Bsa29I ATCGAT 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 625, 1233
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 200, 440, 1095
Bse1I ACTGG 2 cut(s) 60, 98
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 3 cut(s) 627, 813, 1234
BseCI ATCGAT 1 cut(s) 701
BseDI CCNNGG 2 cut(s) 625, 1233
BseGI GGATG 2 cut(s) 148, 1104
BseLI CCNNNNNNNGG 4 cut(s) 199, 200, 440, 1095
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 49, 756
BseNI ACTGG 2 cut(s) 60, 98
BseXI GCAGC 3 cut(s) 55, 56, 1076
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 2 cut(s) 287, 816
BshVI ATCGAT 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 2 cut(s) 968, 1188
BslFI GGGAC 2 cut(s) 984, 1160
BslI CCNNNNNNNGG 4 cut(s) 199, 200, 440, 1095
BsmFI GGGAC 2 cut(s) 984, 1160
BsnI GGCC 2 cut(s) 287, 816
Bsp119I TTCGAA 1 cut(s) 878
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 2 cut(s) 128, 702
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 287, 816
BspCNI CTCAG 2 cut(s) 48, 757
BspDI ATCGAT 1 cut(s) 701
BspFNI CGCG 1 cut(s) 687
BspLI GGNNCC 5 cut(s) 934, 1148, 1149, 1192, 1239
BspPI GGATC 1 cut(s) 697
BspT104I TTCGAA 1 cut(s) 878
BspTI CTTAAG 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 2 cut(s) 625, 1233
BssMI GATC 2 cut(s) 128, 702
Bst2UI CCWGG 3 cut(s) 627, 813, 1234
Bst4CI ACNGT 1 cut(s) 449
Bst6I CTCTTC 1 cut(s) 792
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 2 cut(s) 50, 65
BstBI TTCGAA 1 cut(s) 878
BstDEI CTNAG 3 cut(s) 35, 717, 765
BstF5I GGATG 2 cut(s) 148, 1104
BstFNI CGCG 1 cut(s) 687
BstHHI GCGC 3 cut(s) 624, 632, 842
BstKTI GATC 2 cut(s) 131, 705
BstMBI GATC 2 cut(s) 128, 702
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 3 cut(s) 627, 813, 1234
BstNSI RCATGY 2 cut(s) 622, 949
BstSCI CCNGG 5 cut(s) 625, 811, 967, 1186, 1232
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 3 cut(s) 55, 56, 1076
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 701
BsuRI GGCC 2 cut(s) 287, 816
BsuTUI ATCGAT 1 cut(s) 701
BtsCI GGATG 2 cut(s) 148, 1104
BtsIMutI CAGTG 4 cut(s) 53, 142, 756, 1218
CfoI GCGC 3 cut(s) 624, 632, 842
Cfr13I GGNCC 2 cut(s) 407, 1147
ClaI ATCGAT 1 cut(s) 701
Csp6I GTAC 1 cut(s) 943
CviAII CATG 4 cut(s) 619, 946, 1046, 1257
CviQI GTAC 1 cut(s) 943
DdeI CTNAG 3 cut(s) 35, 717, 765
DpnI GATC 2 cut(s) 130, 704
DpnII GATC 2 cut(s) 128, 702
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 407, 1147
Eco57I CTGAAG 1 cut(s) 995
EcoO109I RGGNCCY 2 cut(s) 407, 1147
EcoRII CCWGG 3 cut(s) 625, 811, 1232
FaeI CATG 4 cut(s) 622, 949, 1049, 1260
FaqI GGGAC 2 cut(s) 984, 1160
FatI CATG 4 cut(s) 618, 945, 1045, 1256
Fnu4HI GCNGC 3 cut(s) 45, 69, 1065
FokI GGATG 2 cut(s) 135, 1111
Fsp4HI GCNGC 3 cut(s) 45, 69, 1065
FspBI CTAG 3 cut(s) 41, 654, 1130
GlaI GCGC 3 cut(s) 623, 631, 841
GluI GCNGC 3 cut(s) 45, 69, 1065
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 2 cut(s) 287, 816
HapII CCGG 2 cut(s) 968, 1188
HhaI GCGC 3 cut(s) 624, 632, 842
Hin1II CATG 4 cut(s) 622, 949, 1049, 1260
Hin6I GCGC 3 cut(s) 622, 630, 840
HinP1I GCGC 3 cut(s) 622, 630, 840
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 2 cut(s) 155, 854
HpaII CCGG 2 cut(s) 968, 1188
HphI GGTGA 2 cut(s) 1001, 1117
Hpy166II GTNNAC 2 cut(s) 140, 214
Hpy188I TCNGA 4 cut(s) 256, 340, 766, 1141
Hpy188III TCNNGA 3 cut(s) 152, 610, 1130
Hpy8I GTNNAC 2 cut(s) 140, 214
HpyAV CCTTC 7 cut(s) 492, 607, 718, 923, 980, 1096, 1174
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 5 cut(s) 238, 322, 528, 897, 1179
HpyCH4V TGCA 7 cut(s) 53, 148, 199, 401, 949, 1049, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 3 cut(s) 35, 717, 765
HpySE526I ACGT 5 cut(s) 238, 322, 528, 897, 1179
Hsp92II CATG 4 cut(s) 622, 949, 1049, 1260
HspAI GCGC 3 cut(s) 622, 630, 840
KflI GGGWCCC 1 cut(s) 1147
Kzo9I GATC 2 cut(s) 128, 702
LmnI GCTCC 2 cut(s) 814, 932
Lsp1109I GCAGC 3 cut(s) 55, 56, 1076
LweI GCATC 3 cut(s) 111, 157, 1213
MaeI CTAG 3 cut(s) 41, 654, 1130
MaeII ACGT 5 cut(s) 238, 322, 528, 897, 1179
MaeIII GTNAC 3 cut(s) 443, 989, 1114
MalI GATC 2 cut(s) 130, 704
MboI GATC 2 cut(s) 128, 702
MboII GAAGA 6 cut(s) 179, 595, 598, 809, 938, 988
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 697
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 8 cut(s) 186, 274, 358, 426, 647, 658, 732, 780
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 963
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 3 cut(s) 783, 819, 1182
MslI CAYNNNNRTG 2 cut(s) 119, 1141
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 2 cut(s) 968, 1188
MspR9I CCNGG 5 cut(s) 627, 813, 969, 1188, 1234
MvaI CCWGG 3 cut(s) 627, 813, 1234
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 2 cut(s) 969, 1188
NdeII GATC 2 cut(s) 128, 702
NlaIII CATG 4 cut(s) 622, 949, 1049, 1260
NlaIV GGNNCC 5 cut(s) 934, 1148, 1149, 1192, 1239
NmuCI GTSAC 1 cut(s) 989
NspI RCATGY 2 cut(s) 622, 949
NspV TTCGAA 1 cut(s) 878
PceI AGGCCT 1 cut(s) 816
PfeI GAWTC 1 cut(s) 854
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 3 cut(s) 46, 70, 1066
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 2 cut(s) 407, 1147
PsiI TTATAA 3 cut(s) 231, 315, 585
Psp1406I AACGTT 2 cut(s) 897, 1179
Psp5II RGGWCCY 2 cut(s) 407, 1147
Psp6I CCWGG 3 cut(s) 625, 811, 1232
PspGI CCWGG 3 cut(s) 625, 811, 1232
PspN4I GGNNCC 5 cut(s) 934, 1148, 1149, 1192, 1239
PspPI GGNCC 2 cut(s) 407, 1147
PspPPI RGGWCCY 2 cut(s) 407, 1147
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 1 cut(s) 944
RsaNI GTAC 1 cut(s) 943
RseI CAYNNNNRTG 2 cut(s) 119, 1141
SaqAI TTAA 3 cut(s) 783, 819, 1182
SatI GCNGC 3 cut(s) 45, 69, 1065
Sau3AI GATC 2 cut(s) 128, 702
Sau96I GGNCC 2 cut(s) 407, 1147
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 5 cut(s) 627, 813, 969, 1188, 1234
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 3 cut(s) 111, 157, 1213
SfuI TTCGAA 1 cut(s) 878
SinI GGWCC 2 cut(s) 407, 1147
SmiMI CAYNNNNRTG 2 cut(s) 119, 1141
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 8 cut(s) 186, 274, 358, 426, 647, 658, 732, 780
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 836
SspMI CTAG 3 cut(s) 41, 654, 1130
StuI AGGCCT 1 cut(s) 816
StyD4I CCNGG 5 cut(s) 625, 811, 967, 1186, 1232
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 5 cut(s) 241, 325, 531, 900, 1182
TaqI TCGA 5 cut(s) 451, 609, 701, 795, 878
TasI AATT 8 cut(s) 186, 274, 358, 426, 647, 658, 732, 780
TatI WGTACW 1 cut(s) 942
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 3 cut(s) 783, 819, 1182
Tru9I TTAA 3 cut(s) 783, 819, 1182
TscAI CASTG 4 cut(s) 60, 142, 756, 1225
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 3 cut(s) 44, 68, 1064
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 3 cut(s) 180, 653, 1115
TspGWI ACGGA 2 cut(s) 91, 929
TspRI CASTG 4 cut(s) 60, 142, 756, 1225
Tth111I GACNNNGTC 1 cut(s) 995
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 407, 1147
XapI RAATTY 6 cut(s) 186, 274, 358, 426, 658, 732
XbaI TCTAGA 1 cut(s) 1129
XceI RCATGY 2 cut(s) 622, 949
XspI CTAG 3 cut(s) 41, 654, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.