Prupe.1G475900_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39626286 .. 39627706
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475900.1

Sequence Viewer

Length: 807 bp
ATGAATGCTGTTGGGAATGGAAAGCCAATTGACCACAAGGGCAAACCTGAAAATACTGTACTACCACAGCTTGCACGACGCCCATTTTCTTACAAGAGTGATGATCGTCCCACTGACAATCAACTCCATTATAAAAACGTAGCTATTTTCTTCTTGGAGAAGGACATGCGCCCTGGCACAACAATGAGCTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGAGAAAGAGCTCAATCGATCCCCTTCTCCTCTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAGGCTCCAGGCATTAAGGGAGAGGAAATATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTCGAACAAGAAACGTTCAAGCAATCTCGACGGAGGTATTGGAAAAAGGTGCCACCATGTCCATGCACAAGCACACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGTCAAAGTCGTTTTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTACTGCCATGTAATAAAACCAACAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGTGAAAGTTAAAGCAGTAGCCATCTGCCATCTAGACACATCAGAATGGAACCCAAAGCATTTGGCCTTCCAAATCCTCAAAGTTAAGCCCGGAACAATTCCCATCTGCCATTTCCTTCCCACTGATCATATTGTCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

269

Amino Acids

30.05

Weight (kDa)

9.34

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AarI CACCTGC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 479
AclI AACGTT 1 cut(s) 444
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 2 cut(s) 205, 279
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 1 cut(s) 60
AgsI TTSAA 3 cut(s) 210, 286, 449
AjnI CCWGG 2 cut(s) 172, 358
AluBI AGCT 6 cut(s) 70, 143, 189, 242, 430, 614
AluI AGCT 6 cut(s) 70, 143, 189, 242, 430, 614
Alw21I GWGCWC 1 cut(s) 244
AlwI GGATC 1 cut(s) 244
AoxI GGCC 1 cut(s) 708
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 2 cut(s) 205, 279
AspLEI GCGC 2 cut(s) 171, 389
AsuC2I CCSGG 2 cut(s) 516, 735
AsuHPI GGTGA 1 cut(s) 658
AsuII TTCGAA 2 cut(s) 425, 433
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 244
BauI CACGAG 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 635, 674, 681, 755
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 2 cut(s) 174, 360
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 2 cut(s) 516, 735
BfaI CTAG 2 cut(s) 201, 677
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 4 cut(s) 174, 360, 516, 735
BmiI GGNNCC 4 cut(s) 357, 481, 695, 786
BmrFI CCNGG 4 cut(s) 174, 360, 516, 735
BpmI CTGGAG 1 cut(s) 342
Bpu14I TTCGAA 2 cut(s) 425, 433
BpuMI CCSGG 2 cut(s) 516, 735
Bsa29I ATCGAT 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 174, 360
BseCI ATCGAT 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 623
BshFI GGCC 1 cut(s) 710
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 515, 735
BslFI GGGAC 2 cut(s) 93, 531
BsmFI GGGAC 2 cut(s) 93, 531
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 710
Bsp119I TTCGAA 2 cut(s) 425, 433
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 103, 249, 769
BspANI GGCC 1 cut(s) 710
BspDI ATCGAT 1 cut(s) 248
BspLI GGNNCC 4 cut(s) 357, 481, 695, 786
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 244
BspT104I TTCGAA 2 cut(s) 425, 433
BspT107I GGYRCC 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 103, 249, 769
BssNI GRCGYC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 174, 360
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 79
BstBI TTCGAA 2 cut(s) 425, 433
BstC8I GCNNGC 1 cut(s) 72
BstHHI GCGC 2 cut(s) 171, 389
BstKTI GATC 3 cut(s) 106, 252, 772
BstMBI GATC 3 cut(s) 103, 249, 769
BstNI CCWGG 2 cut(s) 174, 360
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 4 cut(s) 172, 358, 514, 733
BstV1I GCAGC 1 cut(s) 623
Bsu15I ATCGAT 1 cut(s) 248
BsuRI GGCC 1 cut(s) 710
BsuTUI ATCGAT 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 651
BtsIMutI CAGTG 3 cut(s) 111, 303, 765
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 2 cut(s) 171, 389
ClaI ATCGAT 1 cut(s) 248
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 5 cut(s) 166, 487, 493, 593, 804
CviQI GTAC 1 cut(s) 59
DpnI GATC 3 cut(s) 105, 251, 771
DpnII GATC 3 cut(s) 103, 249, 769
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 172, 358
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 5 cut(s) 169, 490, 496, 596, 807
FaqI GGGAC 2 cut(s) 93, 531
FatI CATG 5 cut(s) 165, 486, 492, 592, 803
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 612
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 2 cut(s) 201, 677
GlaI GCGC 2 cut(s) 170, 388
GluI GCNGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 710
HapII CCGG 2 cut(s) 515, 735
HgaI GACGC 1 cut(s) 87
HhaI GCGC 2 cut(s) 171, 389
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 5 cut(s) 169, 490, 496, 596, 807
Hin6I GCGC 2 cut(s) 169, 387
HinP1I GCGC 2 cut(s) 169, 387
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 1 cut(s) 401
HpaII CCGG 2 cut(s) 515, 735
HphI GGTGA 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 688, 789
Hpy188III TCNNGA 2 cut(s) 457, 677
Hpy99I CGWCG 2 cut(s) 81, 463
HpyAV CCTTC 4 cut(s) 154, 265, 721, 770
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 138, 444
HpyCH4V TGCA 3 cut(s) 74, 496, 803
HpySE526I ACGT 2 cut(s) 138, 444
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 5 cut(s) 169, 490, 496, 596, 807
HspAI GCGC 2 cut(s) 169, 387
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 3 cut(s) 103, 249, 769
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 623
MaeI CTAG 2 cut(s) 201, 677
MaeII ACGT 2 cut(s) 138, 444
MalI GATC 3 cut(s) 105, 251, 771
MboI GATC 3 cut(s) 103, 249, 769
MboII GAAGA 3 cut(s) 142, 356, 535
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 6 cut(s) 27, 194, 205, 279, 327, 741
MnlI CCTC 5 cut(s) 271, 346, 367, 457, 731
MseI TTAA 4 cut(s) 330, 366, 654, 729
MslI CAYNNNNRTG 4 cut(s) 182, 491, 509, 688
MspI CCGG 2 cut(s) 515, 735
MspR9I CCNGG 4 cut(s) 174, 360, 516, 735
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 174, 360
NciI CCSGG 2 cut(s) 516, 735
NdeII GATC 3 cut(s) 103, 249, 769
NlaIII CATG 5 cut(s) 169, 490, 496, 596, 807
NlaIV GGNNCC 4 cut(s) 357, 481, 695, 786
NspI RCATGY 1 cut(s) 169
NspV TTCGAA 2 cut(s) 425, 433
PaqCI CACCTGC 1 cut(s) 524
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 613
PsiI TTATAA 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 244
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 172, 358
PspGI CCWGG 2 cut(s) 172, 358
PspN4I GGNNCC 4 cut(s) 357, 481, 695, 786
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 4 cut(s) 182, 491, 509, 688
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 4 cut(s) 330, 366, 654, 729
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 3 cut(s) 103, 249, 769
ScrFI CCNGG 4 cut(s) 174, 360, 516, 735
SduI GDGCHC 1 cut(s) 244
SfuI TTCGAA 2 cut(s) 425, 433
SmiMI CAYNNNNRTG 4 cut(s) 182, 491, 509, 688
Sse9I AATT 6 cut(s) 27, 194, 205, 279, 327, 741
SspMI CTAG 2 cut(s) 201, 677
SstI GAGCTC 1 cut(s) 244
StyD4I CCNGG 4 cut(s) 172, 358, 514, 733
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 141, 447
TaqI TCGA 5 cut(s) 248, 342, 425, 433, 458
TasI AATT 6 cut(s) 27, 194, 205, 279, 327, 741
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 4 cut(s) 330, 366, 654, 729
Tru9I TTAA 4 cut(s) 330, 366, 654, 729
TscAI CASTG 3 cut(s) 118, 303, 772
TseI GCWGC 1 cut(s) 611
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 118, 303, 772
XapI RAATTY 2 cut(s) 205, 279
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 169
XspI CTAG 2 cut(s) 201, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.