Rh1CG246900

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000559
Physical Location & Seq
Reverse (-)
50892579 .. 50895522
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG246900.1

Sequence Viewer

Length: 876 bp
ATGAGGCCGCAAAGAAAGCCACAAACAACAGGCCATTCAATGGAAACAACCAACGTCGGTATACCAACGTCTGTGGTGGCATCAGTAGTGGTGGGAATTGGGTATGCTAATAAAGTTGATGATGACAATTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCAATGCCTTCCAAAGTTGTACAACAACTTCTAAACCCTGCAGGTCAAAGAAGTTACACTGGGATTGGAAAGGATGCTGTAAGTCTTACACATGTACCGTCAAAAATATTTATTTATTCTGCTGCCCCTCTAGAAGTCAAAGTGGAGCCAGGTTTAACTACATTCTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCGAGTTGCAGAGTCCATACCATTTTCGAGTAGCAAGTTGCCAGAAATTCTAACCTACTTTGGAGTGAAACCCAAATCAGCGGTTGCAGAAATAATGAAATGGACAATCGAAGAGTGTGAGGCACCGACCATTAAAGGCGAAGACAAGTACTGCGCAACATCGCTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAATGAAAACAAACAAGACTATAGAATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGTGTGCCATAAGGAGAACTACGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAACAAGGGCTTACATGGTTCTGTTGGTGGGTGCTGATGGGGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATACTGATACCACTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

291

Amino Acids

32.05

Weight (kDa)

8.9

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 111 - 290 3.7e-58 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 1 cut(s) 61
AciI CCGC 2 cut(s) 8, 503
AcsI RAATTY 3 cut(s) 148, 468, 770
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 4 cut(s) 189, 264, 572, 629
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 39, 388, 615
AjnI CCWGG 2 cut(s) 131, 316
AluBI AGCT 4 cut(s) 155, 619, 848, 873
AluI AGCT 4 cut(s) 155, 619, 848, 873
Alw26I GTCTC 1 cut(s) 705
AoxI GGCC 3 cut(s) 5, 31, 651
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 3 cut(s) 148, 468, 770
AspLEI GCGC 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BbsI GAAGAC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 815
BciT130I CCWGG 2 cut(s) 133, 318
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 3 cut(s) 299, 587, 870
BfmI CTRYAG 2 cut(s) 207, 676
BfuAI ACCTGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 346
BisI GCNGC 2 cut(s) 8, 291
BlsI GCNGC 2 cut(s) 9, 292
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 133, 318
BmiI GGNNCC 2 cut(s) 315, 546
BmrFI CCNGG 2 cut(s) 133, 318
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 89, 232
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 714
Bsa29I ATCGAT 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 337, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 149, 232, 697
Bse3DI GCAATG 1 cut(s) 374
BseBI CCWGG 2 cut(s) 133, 318
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 337, 648
BseGI GGATG 2 cut(s) 141, 247
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 149, 232, 697
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 3 cut(s) 7, 33, 653
BshNI GGYRCC 1 cut(s) 544
BshVI ATCGAT 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 705
BsnI GGCC 3 cut(s) 7, 33, 653
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 346, 597
BspACI CCGC 2 cut(s) 8, 503
BspANI GGCC 3 cut(s) 7, 33, 653
BspDI ATCGAT 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 315, 546
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 3 cut(s) 149, 232, 697
BssECI CCNNGG 2 cut(s) 337, 648
BssMI GATC 2 cut(s) 346, 597
BssNAI GTATAC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 337
Bst1107I GTATAC 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 133, 318
Bst4CI ACNGT 3 cut(s) 267, 370, 610
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 187
BstF5I GGATG 2 cut(s) 141, 247
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 2 cut(s) 349, 600
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 2 cut(s) 346, 597
BstMWI GCNNNNNNNGC 2 cut(s) 16, 650
BstNI CCWGG 2 cut(s) 133, 318
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 131, 316
BstSFI CTRYAG 2 cut(s) 207, 676
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 707
BstYI RGATCY 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 3 cut(s) 7, 33, 653
BsuTUI ATCGAT 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 141, 247
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 578
ClaI ATCGAT 1 cut(s) 600
Csp6I GTAC 4 cut(s) 188, 263, 571, 628
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 2 cut(s) 260, 799
CviQI GTAC 4 cut(s) 188, 263, 571, 628
DpnI GATC 2 cut(s) 348, 599
DpnII GATC 2 cut(s) 346, 597
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 131, 316
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 2 cut(s) 263, 802
FatI CATG 2 cut(s) 259, 798
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 8, 291
FokI GGATG 2 cut(s) 148, 254
Fsp4HI GCNGC 2 cut(s) 8, 291
FspBI CTAG 3 cut(s) 299, 587, 870
FspI TGCGCA 1 cut(s) 577
GlaI GCGC 1 cut(s) 577
GluI GCNGC 2 cut(s) 8, 291
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 3 cut(s) 7, 33, 653
HhaI GCGC 1 cut(s) 578
Hin1II CATG 2 cut(s) 263, 802
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 4 cut(s) 381, 434, 590, 696
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 299, 385
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 2 cut(s) 59, 426
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 3 cut(s) 267, 370, 610
HpyCH4IV ACGT 4 cut(s) 54, 68, 630, 744
HpyCH4V TGCA 4 cut(s) 209, 431, 509, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 650
HpySE526I ACGT 4 cut(s) 54, 68, 630, 744
Hsp92II CATG 2 cut(s) 263, 802
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 346, 597
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 89, 232
MaeI CTAG 3 cut(s) 299, 587, 870
MaeII ACGT 4 cut(s) 54, 68, 630, 744
MaeIII GTNAC 4 cut(s) 221, 370, 398, 826
MalI GATC 2 cut(s) 348, 599
MboI GATC 2 cut(s) 346, 597
MboII GAAGA 4 cut(s) 325, 341, 545, 575
MflI RGATCY 1 cut(s) 346
MluCI AATT 6 cut(s) 96, 127, 148, 468, 681, 770
MlyI GAGTC 2 cut(s) 443, 705
MnlI CCTC 4 cut(s) 306, 429, 535, 643
MseI TTAA 2 cut(s) 323, 555
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 2 cut(s) 133, 318
MvaI CCWGG 2 cut(s) 133, 318
MwoI GCNNNNNNNGC 2 cut(s) 16, 650
NdeII GATC 2 cut(s) 346, 597
NlaIII CATG 2 cut(s) 263, 802
NlaIV GGNNCC 2 cut(s) 315, 546
NmuCI GTSAC 1 cut(s) 370
NsbI TGCGCA 1 cut(s) 577
NspI RCATGY 1 cut(s) 263
PciI ACATGT 1 cut(s) 259
PfeI GAWTC 2 cut(s) 381, 590
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 2 cut(s) 9, 292
PleI GAGTC 2 cut(s) 442, 704
PpsI GAGTC 2 cut(s) 442, 704
PscI ACATGT 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 131, 316
PspGI CCWGG 2 cut(s) 131, 316
PspN4I GGNNCC 2 cut(s) 315, 546
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 4 cut(s) 189, 264, 572, 629
RsaNI GTAC 4 cut(s) 188, 263, 571, 628
SaqAI TTAA 2 cut(s) 323, 555
SatI GCNGC 2 cut(s) 8, 291
Sau3AI GATC 2 cut(s) 346, 597
SbfI CCTGCAGG 1 cut(s) 211
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 2 cut(s) 443, 705
ScrFI CCNGG 2 cut(s) 133, 318
SdaI CCTGCAGG 1 cut(s) 211
SfaNI GCATC 2 cut(s) 89, 232
SfcI CTRYAG 2 cut(s) 207, 676
Sse8387I CCTGCAGG 1 cut(s) 211
Sse9I AATT 6 cut(s) 96, 127, 148, 468, 681, 770
SsiI CCGC 2 cut(s) 8, 503
SspI AATATT 1 cut(s) 276
SspMI CTAG 3 cut(s) 299, 587, 870
StyD4I CCNGG 2 cut(s) 131, 316
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 267, 370, 610
TaiI ACGT 4 cut(s) 57, 71, 633, 747
TaqI TCGA 5 cut(s) 424, 449, 531, 600, 719
TasI AATT 6 cut(s) 96, 127, 148, 468, 681, 770
TatI WGTACW 2 cut(s) 187, 570
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 381, 590
Tru1I TTAA 2 cut(s) 323, 555
Tru9I TTAA 2 cut(s) 323, 555
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 533, 675
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 40
XapI RAATTY 3 cut(s) 148, 468, 770
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 3 cut(s) 299, 587, 870
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.