Prupe.1G475500_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39574376 .. 39575818
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475500.1

Sequence Viewer

Length: 891 bp
ATGTTGCAGCTAGCAGCGGTGGCACTGGCAAACCATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAAATGCCAAGAGCTATCAGTGAACTTCTGCATCCTGGGCAACCTGAAAATACTGTACTACCACAGCTTGCACGACGCCCATTTTCTTACAAGAGTGATGATCGTCCCACTGACAATCAACTCCATTATAAAAACGTAGCTATTTTCTTCTTGGAGAAGGACATGCGCCCTGGCACAACAATGAGCTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACCAGAAAGAGCTCAATCGATCCCCTTCTCCTCTAACAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAGGCTCCAGGCATTAAGGGAGAGGAAATATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAATTTTCGAACAAGAAACGTTCAAGCAATCTCGACAGAGGTATTGGAAAAAGGTGCCACCATGTCCATGCACAAGCATACAACAATGCCGGGACTGAAGAAGTTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTACTGCCATGTAATAAAACCAACAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGTGAAGATTAAAGCAGTAGCCATCTGCCATCTAGACACATCAGAATGGAACCCAAAGCATTTGGCCTTCCAAATCCTCAAAGTTAAGCCCGGAACAATTCCCATCTGCCATTTCCTTCCCACTGATCATAGTGTCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

297

Amino Acids

33.09

Weight (kDa)

8.92

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 563
AciI CCGC 1 cut(s) 17
AclI AACGTT 1 cut(s) 528
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 3 cut(s) 289, 363, 511
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 3 cut(s) 294, 370, 533
AjnI CCWGG 3 cut(s) 121, 256, 442
AluBI AGCT 7 cut(s) 10, 101, 154, 227, 273, 326, 698
AluI AGCT 7 cut(s) 10, 101, 154, 227, 273, 326, 698
Alw21I GWGCWC 1 cut(s) 328
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 792
ApeKI GCWGC 4 cut(s) 7, 14, 38, 695
ApoI RAATTY 3 cut(s) 289, 363, 511
AspLEI GCGC 2 cut(s) 255, 473
AsuC2I CCSGG 2 cut(s) 600, 819
AsuHPI GGTGA 2 cut(s) 632, 742
AsuII TTCGAA 2 cut(s) 509, 517
AsuNHI GCTAGC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 4 cut(s) 19, 25, 26, 707
BccI CCATC 4 cut(s) 719, 758, 765, 839
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 3 cut(s) 123, 258, 444
BclI TGATCA 1 cut(s) 853
BcnI CCSGG 2 cut(s) 600, 819
BfaI CTAG 3 cut(s) 11, 285, 761
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 4 cut(s) 8, 15, 39, 696
BlsI GCNGC 4 cut(s) 9, 16, 40, 697
Bme1390I CCNGG 5 cut(s) 123, 258, 444, 600, 819
BmiI GGNNCC 4 cut(s) 441, 565, 779, 870
BmrFI CCNGG 5 cut(s) 123, 258, 444, 600, 819
BmsI GCATC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 426
Bpu14I TTCGAA 2 cut(s) 509, 517
BpuMI CCSGG 2 cut(s) 600, 819
Bsa29I ATCGAT 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 122, 256
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse1I ACTGG 2 cut(s) 30, 68
BseBI CCWGG 3 cut(s) 123, 258, 444
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 122, 256
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 30, 68
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 4 cut(s) 19, 25, 26, 707
BshFI GGCC 1 cut(s) 794
BshNI GGYRCC 1 cut(s) 563
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 2 cut(s) 599, 819
BslFI GGGAC 2 cut(s) 177, 615
BsmFI GGGAC 2 cut(s) 177, 615
BsnI GGCC 1 cut(s) 794
Bsp119I TTCGAA 2 cut(s) 509, 517
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 3 cut(s) 187, 333, 853
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 794
BspDI ATCGAT 1 cut(s) 332
BspLI GGNNCC 4 cut(s) 441, 565, 779, 870
BspMI ACCTGC 1 cut(s) 608
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 328
BspT104I TTCGAA 2 cut(s) 509, 517
BspT107I GGYRCC 1 cut(s) 563
BsrI ACTGG 2 cut(s) 30, 68
BssECI CCNNGG 2 cut(s) 122, 256
BssMI GATC 3 cut(s) 187, 333, 853
BssNI GRCGYC 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 123, 258, 444
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 35
BstBI TTCGAA 2 cut(s) 509, 517
BstC8I GCNNGC 2 cut(s) 12, 156
BstF5I GGATG 1 cut(s) 118
BstHHI GCGC 2 cut(s) 255, 473
BstKTI GATC 3 cut(s) 190, 336, 856
BstMBI GATC 3 cut(s) 187, 333, 853
BstMWI GCNNNNNNNGC 4 cut(s) 20, 35, 47, 124
BstNI CCWGG 3 cut(s) 123, 258, 444
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 5 cut(s) 121, 256, 442, 598, 817
BstV1I GCAGC 4 cut(s) 19, 25, 26, 707
Bsu15I ATCGAT 1 cut(s) 332
BsuRI GGCC 1 cut(s) 794
BsuTUI ATCGAT 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 5 cut(s) 23, 112, 195, 387, 849
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 2 cut(s) 12, 156
CfoI GCGC 2 cut(s) 255, 473
ClaI ATCGAT 1 cut(s) 332
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 143
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 6 cut(s) 35, 250, 571, 577, 677, 888
CviQI GTAC 1 cut(s) 143
DpnI GATC 3 cut(s) 189, 335, 855
DpnII GATC 3 cut(s) 187, 333, 853
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 326
EcoRII CCWGG 3 cut(s) 121, 256, 442
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 6 cut(s) 38, 253, 574, 580, 680, 891
FaqI GGGAC 2 cut(s) 177, 615
FatI CATG 6 cut(s) 34, 249, 570, 576, 676, 887
FbaI TGATCA 1 cut(s) 853
Fnu4HI GCNGC 4 cut(s) 8, 15, 39, 696
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 4 cut(s) 8, 15, 39, 696
FspBI CTAG 3 cut(s) 11, 285, 761
GlaI GCGC 2 cut(s) 254, 472
GluI GCNGC 4 cut(s) 8, 15, 39, 696
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 794
HapII CCGG 2 cut(s) 599, 819
HgaI GACGC 1 cut(s) 171
HhaI GCGC 2 cut(s) 255, 473
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 6 cut(s) 38, 253, 574, 580, 680, 891
Hin6I GCGC 2 cut(s) 253, 471
HinP1I GCGC 2 cut(s) 253, 471
HinfI GANTC 1 cut(s) 485
HpaII CCGG 2 cut(s) 599, 819
HphI GGTGA 2 cut(s) 632, 742
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 772, 873
Hpy188III TCNNGA 2 cut(s) 541, 761
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 4 cut(s) 238, 349, 805, 854
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 222, 528
HpyCH4V TGCA 5 cut(s) 7, 118, 158, 580, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 35, 47, 124
HpySE526I ACGT 2 cut(s) 222, 528
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 6 cut(s) 38, 253, 574, 580, 680, 891
HspAI GCGC 2 cut(s) 253, 471
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 3 cut(s) 187, 333, 853
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 4 cut(s) 19, 25, 26, 707
LweI GCATC 1 cut(s) 127
MaeI CTAG 3 cut(s) 11, 285, 761
MaeII ACGT 2 cut(s) 222, 528
MaeIII GTNAC 1 cut(s) 620
MalI GATC 3 cut(s) 189, 335, 855
MboI GATC 3 cut(s) 187, 333, 853
MboII GAAGA 4 cut(s) 226, 440, 619, 745
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 6 cut(s) 278, 289, 363, 411, 511, 825
MnlI CCTC 6 cut(s) 63, 355, 430, 451, 541, 815
MseI TTAA 4 cut(s) 414, 450, 738, 813
MslI CAYNNNNRTG 4 cut(s) 89, 266, 575, 772
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 599, 819
MspR9I CCNGG 5 cut(s) 123, 258, 444, 600, 819
MvaI CCWGG 3 cut(s) 123, 258, 444
MwoI GCNNNNNNNGC 4 cut(s) 20, 35, 47, 124
NciI CCSGG 2 cut(s) 600, 819
NdeII GATC 3 cut(s) 187, 333, 853
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 6 cut(s) 38, 253, 574, 580, 680, 891
NlaIV GGNNCC 4 cut(s) 441, 565, 779, 870
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 2 cut(s) 509, 517
PaqCI CACCTGC 1 cut(s) 608
PfeI GAWTC 1 cut(s) 485
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 4 cut(s) 9, 16, 40, 697
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 328
Psp1406I AACGTT 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 121, 256, 442
PspGI CCWGG 3 cut(s) 121, 256, 442
PspN4I GGNNCC 4 cut(s) 441, 565, 779, 870
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 4 cut(s) 89, 266, 575, 772
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 4 cut(s) 414, 450, 738, 813
SatI GCNGC 4 cut(s) 8, 15, 39, 696
Sau3AI GATC 3 cut(s) 187, 333, 853
ScrFI CCNGG 5 cut(s) 123, 258, 444, 600, 819
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 127
SfuI TTCGAA 2 cut(s) 509, 517
SmiMI CAYNNNNRTG 4 cut(s) 89, 266, 575, 772
Sse9I AATT 6 cut(s) 278, 289, 363, 411, 511, 825
SsiI CCGC 1 cut(s) 17
SspMI CTAG 3 cut(s) 11, 285, 761
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 5 cut(s) 121, 256, 442, 598, 817
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 225, 531
TaqI TCGA 5 cut(s) 332, 426, 509, 517, 542
TasI AATT 6 cut(s) 278, 289, 363, 411, 511, 825
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 4 cut(s) 414, 450, 738, 813
Tru9I TTAA 4 cut(s) 414, 450, 738, 813
TscAI CASTG 5 cut(s) 30, 112, 202, 387, 856
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 4 cut(s) 7, 14, 38, 695
Tsp45I GTSAC 1 cut(s) 620
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 5 cut(s) 30, 112, 202, 387, 856
Tth111I GACNNNGTC 1 cut(s) 626
XapI RAATTY 3 cut(s) 289, 363, 511
XbaI TCTAGA 1 cut(s) 760
XceI RCATGY 1 cut(s) 253
XspI CTAG 3 cut(s) 11, 285, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.