Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

38135927 .. 38136930

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G453600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGTTCTGCCTCTCACACATAATTGTTTTTCTCACCCTCACACTGTTGGCGAGGGCAAGCTATGCTGCTGCTGCCAGAGACCAAACGCAAAGAAGTTTCTTCTTGGAGAAGGAAATGCAACCCGGCACAACCATGAAATATAGCTTAGGTAGAAATATAAATGGGGAATGTTTCCTGCCCCGAAATATTGCTCAATCGATCCCCTTCTCTTCCGCAAAACTGCCAGAAGTTGTCAACAAATTTTCTATGGAGCCAACGTCCGTGGAAGCCGCTGTAATTCAGGAAACCATTCAAGATTGTGAAAGTGGAACCCTTAATGGAGAGGACAGATATTGCGCCACCTCCTTGGAGTCAATGGCTGACTTCGCCATGTCCAAGCTGGGAAGAAACGTTCAAGCATTCTCGACAGAGGTCGAAAAGGGAGCCACCCTGCAGAAGTACACAGTAAAGCCTGGCGTGAAGAAGGTGAACGATGGTGGCAATTTCATTTTGTGTCACAAGCTGACCGACGCGAATGCTGTCTTCTTTTGCCACACATTTGGACAAACTAGGGCTTATGTGGTGCCTCTAAAAGGTGCTGACAGGACGACCGCTAGCGCAGTAGCAATCTGCCACCTGGACACATCTGCATGGGACCCCAAGAATCATCCCTTACAAGAGGTCAAAGTTAAGCCAGGAACCGTCCCTGTGTGTCATTATCTTCCCCAGGGTCATATTGCTTGGGTTCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

246

Amino Acids

26.95

Weight (kDa)

8.09

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	1 cut(s)	515
AciI	CCGC	3 cut(s)	216, 273, 594
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	296, 398
AjnI	CCWGG	4 cut(s)	454, 618, 676, 708
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	4 cut(s)	63, 147, 382, 505
AluI	AGCT	4 cut(s)	63, 147, 382, 505
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	196
ApeKI	GCWGC	3 cut(s)	68, 71, 74
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	341, 602
AspS9I	GGNCC	1 cut(s)	637
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	28, 481
AsuNHI	GCTAGC	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	55, 58, 61
BccI	CCATC	1 cut(s)	470
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	4 cut(s)	456, 620, 678, 710
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	552, 597
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	4 cut(s)	69, 72, 75, 273
BlsI	GCNGC	4 cut(s)	70, 73, 76, 274
Bme1390I	CCNGG	5 cut(s)	126, 456, 620, 678, 710
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	8 cut(s)	255, 313, 427, 567, 638, 639, 682, 729
BmrFI	CCNGG	5 cut(s)	126, 456, 620, 678, 710
BmtI	GCTAGC	1 cut(s)	600
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	264, 348, 708, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
BseBI	CCWGG	4 cut(s)	456, 620, 678, 710
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	4 cut(s)	264, 348, 708, 709
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	55, 58, 61
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	594
BshNI	GGYRCC	1 cut(s)	565
BshVI	ATCGAT	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	650, 671
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	650, 671
BsmI	GAATGC	2 cut(s)	401, 523
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	216, 273, 594
BspDI	ATCGAT	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	8 cut(s)	255, 313, 427, 567, 638, 639, 682, 729
BspMAI	CTGCAG	1 cut(s)	438
BspOI	GCTAGC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	75
BssECI	CCNNGG	4 cut(s)	264, 348, 708, 709
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	456, 620, 678, 710
Bst4CI	ACNGT	3 cut(s)	48, 448, 685
Bst6I	CTCTTC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	61, 598
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	341, 602
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 368
BstNI	CCWGG	4 cut(s)	456, 620, 678, 710
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	5 cut(s)	124, 454, 618, 676, 708
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	55, 58, 61
BstV2I	GAAGAC	1 cut(s)	517
BstXI	CCANNNNNNTGG	2 cut(s)	349, 542
Bsu15I	ATCGAT	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	61, 598
CfoI	GCGC	2 cut(s)	341, 602
Cfr13I	GGNCC	1 cut(s)	637
ClaI	ATCGAT	1 cut(s)	200
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	3 cut(s)	136, 373, 633
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	4 cut(s)	454, 618, 676, 708
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	139, 376, 636
FaqI	GGGAC	2 cut(s)	650, 671
FatI	CATG	3 cut(s)	135, 372, 632
Fnu4HI	GCNGC	4 cut(s)	69, 72, 75, 273
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	69, 72, 75, 273
FspBI	CTAG	2 cut(s)	552, 597
GlaI	GCGC	2 cut(s)	340, 601
GluI	GCNGC	4 cut(s)	69, 72, 75, 273
GsaI	CCCAGC	1 cut(s)	386
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	2 cut(s)	341, 602
Hin1II	CATG	3 cut(s)	139, 376, 636
Hin6I	GCGC	2 cut(s)	339, 600
HinP1I	GCGC	2 cut(s)	339, 600
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	353, 646
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	28, 481
Hpy166II	GTNNAC	3 cut(s)	238, 444, 472
Hpy188III	TCNNGA	3 cut(s)	284, 296, 406
Hpy8I	GTNNAC	3 cut(s)	238, 444, 472
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	3 cut(s)	106, 217, 460
HpyCH4III	ACNGT	3 cut(s)	48, 448, 685
HpyCH4IV	ACGT	2 cut(s)	260, 393
HpyCH4V	TGCA	3 cut(s)	121, 436, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 368
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	260, 393
Hsp92II	CATG	3 cut(s)	139, 376, 636
HspAI	GCGC	2 cut(s)	339, 600
KflI	GGGWCCC	1 cut(s)	637
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	253, 425
Lsp1109I	GCAGC	3 cut(s)	55, 58, 61
MaeI	CTAG	2 cut(s)	552, 597
MaeII	ACGT	2 cut(s)	260, 393
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	6 cut(s)	94, 204, 399, 475, 517, 695
MluCI	AATT	4 cut(s)	24, 242, 279, 484
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	8 cut(s)	23, 48, 50, 319, 355, 406, 579, 655
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	318, 672
MslI	CAYNNNNRTG	2 cut(s)	134, 631
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	5 cut(s)	126, 456, 620, 678, 710
Mva1269I	GAATGC	2 cut(s)	401, 523
MvaI	CCWGG	4 cut(s)	456, 620, 678, 710
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 368
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	201
NheI	GCTAGC	1 cut(s)	596
NlaIII	CATG	3 cut(s)	139, 376, 636
NlaIV	GGNNCC	8 cut(s)	255, 313, 427, 567, 638, 639, 682, 729
NmuCI	GTSAC	1 cut(s)	497
PasI	CCCWGGG	1 cut(s)	709
PctI	GAATGC	2 cut(s)	401, 523
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	4 cut(s)	70, 73, 76, 274
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	4 cut(s)	454, 618, 676, 708
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	4 cut(s)	454, 618, 676, 708
PspN4I	GGNNCC	8 cut(s)	255, 313, 427, 567, 638, 639, 682, 729
PspPI	GGNCC	1 cut(s)	637
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	438
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	134, 631
SaqAI	TTAA	2 cut(s)	318, 672
SatI	GCNGC	4 cut(s)	69, 72, 75, 273
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	5 cut(s)	126, 456, 620, 678, 710
SfcI	CTRYAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	134, 631
Sse9I	AATT	4 cut(s)	24, 242, 279, 484
SsiI	CCGC	3 cut(s)	216, 273, 594
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	552, 597
StyD4I	CCNGG	5 cut(s)	124, 454, 618, 676, 708
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	48, 448, 685
TaiI	ACGT	2 cut(s)	263, 396
TaqI	TCGA	3 cut(s)	200, 407, 417
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	4 cut(s)	24, 242, 279, 484
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	2 cut(s)	318, 672
Tru9I	TTAA	2 cut(s)	318, 672
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	3 cut(s)	68, 71, 74
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	152, 478
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	552, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.