RchiOBHm_Chr1g0356461

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000559
Physical Location & Seq
Reverse (-)
48937950 .. 48938722
773 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58182

Sequence Viewer

Length: 732 bp
ATGCTCATCAAAGGAACTGATATATTGTCACAAGGTCAAAGAAGTTACACTGGGATTGGAAAGGATGTTGTAAGTCTTACACATGTACCGTCAAAAATATTTATTTATTCTGCTGCCTCTCTAGAAGTCAAAGTGGAGCCAGGTTTAACTACATTCTTCCAAGGAAAAGATCTTCAGCATTTGGGGAAAACGGTGACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCGAGTTGCAGAGTCCATACCCTTTTCGAGTAGCAAGTTGCCAGAAATTCTAACCTACTTTGGAGTGAAACCCAAATCAGTGGTTGCAGAAATAATGAAAAGGACAATCGAAGAGTTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAATGAAAACAAACAAGACTATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGTGTGCCATAAGGAGAACTATGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAACAAGGGCTTACATGCTTCCGTTGGTGGGTGCTGATGGGGTTACAAAAGCCAAAGCAGTAGCTATTTGCCATACTGATACCACTAGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCAGTCTGTCATTTTCTGCCCACTACCGGTTTTTTGTGGGCTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

243

Amino Acids

27.01

Weight (kDa)

9.36

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 52 - 120 4.8e-13 BURP domain
BURP PF03181 122 - 241 9e-39 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 624
AcsI RAATTY 2 cut(s) 291, 521
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 87, 380
AfiI CCNNNNNNNGG 3 cut(s) 563, 624, 707
AflIII ACRYGT 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 3 cut(s) 211, 366, 650
AjnI CCWGG 2 cut(s) 139, 667
AluBI AGCT 3 cut(s) 370, 599, 624
AluI AGCT 3 cut(s) 370, 599, 624
Alw26I GTCTC 1 cut(s) 456
AoxI GGCC 2 cut(s) 402, 642
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 291, 521
AsiGI ACCGGT 1 cut(s) 707
AsuHPI GGTGA 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 566
BciT130I CCWGG 2 cut(s) 141, 669
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 2 cut(s) 122, 621
BfmI CTRYAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 141, 669
BmiI GGNNCC 2 cut(s) 138, 629
BmrFI CCNGG 2 cut(s) 141, 669
BmrI ACTGGG 2 cut(s) 60, 677
BmuI ACTGGG 2 cut(s) 60, 677
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 160, 399
BsaWI WCCGGW 1 cut(s) 707
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 624, 707
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 3 cut(s) 55, 448, 683
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 141, 669
BseDI CCNNGG 2 cut(s) 160, 399
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 3 cut(s) 563, 624, 707
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 3 cut(s) 55, 448, 683
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 404, 644
BshTI ACCGGT 1 cut(s) 707
BsiSI CCGG 1 cut(s) 708
BslI CCNNNNNNNGG 3 cut(s) 563, 624, 707
BsmAI GTCTC 1 cut(s) 456
BsnI GGCC 2 cut(s) 404, 644
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 2 cut(s) 404, 644
BspLI GGNNCC 2 cut(s) 138, 629
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 3 cut(s) 55, 448, 683
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 160, 399
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 141, 669
Bst4CI ACNGT 2 cut(s) 90, 193
Bst6I CTCTTC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 2 cut(s) 141, 669
BstNSI RCATGY 2 cut(s) 86, 553
BstSCI CCNGG 2 cut(s) 139, 667
BstSFI CTRYAG 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 2 cut(s) 325, 458
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 2 cut(s) 404, 644
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 48, 330
Cfr10I RCCGGY 1 cut(s) 707
Csp6I GTAC 2 cut(s) 86, 379
CspAI ACCGGT 1 cut(s) 707
CviAII CATG 2 cut(s) 83, 550
CviQI GTAC 2 cut(s) 86, 379
DdeI CTNAG 1 cut(s) 633
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 139, 667
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 86, 553
FatI CATG 2 cut(s) 82, 549
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 122, 621
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 404, 644
HapII CCGG 1 cut(s) 708
Hin1II CATG 2 cut(s) 86, 553
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 204, 257, 447
HpaII CCGG 1 cut(s) 708
HphI GGTGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 122, 208
Hpy99I CGWCG 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 90, 193
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 3 cut(s) 254, 332, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 2 cut(s) 86, 553
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 2 cut(s) 122, 621
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 5 cut(s) 27, 44, 193, 221, 577
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 148, 164, 368
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 291, 521
MlyI GAGTC 2 cut(s) 266, 456
MnlI CCTC 4 cut(s) 127, 252, 394, 665
MseI TTAA 1 cut(s) 146
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 2 cut(s) 141, 669
MvaI CCWGG 2 cut(s) 141, 669
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 86, 553
NlaIV GGNNCC 2 cut(s) 138, 629
NmuCI GTSAC 2 cut(s) 27, 193
NspI RCATGY 2 cut(s) 86, 553
PciI ACATGT 1 cut(s) 82
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 265, 455
PpsI GAGTC 2 cut(s) 265, 455
PscI ACATGT 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 139, 667
PspGI CCWGG 2 cut(s) 139, 667
PspN4I GGNNCC 2 cut(s) 138, 629
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 87, 380
RsaNI GTAC 2 cut(s) 86, 379
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 2 cut(s) 266, 456
ScrFI CCNGG 2 cut(s) 141, 669
SetI ASST 8 cut(s) 37, 145, 302, 372, 384, 470, 601, 626
SfcI CTRYAG 1 cut(s) 427
Sse9I AATT 2 cut(s) 291, 521
SspI AATATT 1 cut(s) 99
SspMI CTAG 2 cut(s) 122, 621
StyD4I CCNGG 2 cut(s) 139, 667
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 90, 193
TaiI ACGT 1 cut(s) 384
TaqI TCGA 4 cut(s) 247, 272, 354, 470
TasI AATT 2 cut(s) 291, 521
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 55, 330
TseFI GTSAC 2 cut(s) 27, 193
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 27, 193
TspDTI ATGAA 2 cut(s) 356, 426
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 55, 330
Van91I CCANNNNNTGG 1 cut(s) 624
XapI RAATTY 2 cut(s) 291, 521
XbaI TCTAGA 1 cut(s) 121
XceI RCATGY 2 cut(s) 86, 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XspI CTAG 2 cut(s) 122, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.