Prupe.1G477200_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000559
Physical Location & Seq
Forward (+)
39916135 .. 39918327
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G477200.1

Sequence Viewer

Length: 1371 bp
ATGGGGTTTCATCTCCCACTCATCTTTGCTATTCTCAGTCTAGCAGCGGTTGCACTGGCAAACAATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGATCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCAAACCTGAAATTTTCCCATTGCAGGGCAATAGAGTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGCAGGGCAATAGAGTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGCCAATAGCTTTTACACTCAAACCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGCCAATAGCTTTTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATTTCCCATTGGGCAATAGCCATTACACTCAAAGCCATTATAAAAAACGTCCTCCTCCTCCATCTGACGAGGGCAAACCTGAAAATATCCCATTGGCACGTTCAGGTTACCAACGAAAAAATTATGGAGCAAGTCCTCCTCCATCTGACAGTCAACTAAAGCATTATAAAGACTTAGCTATTTTCTTCTTCGAGAAGGACATGCGCCCGGGCACAACTATGAAGTTCCAATTCCCTAGAAATTCAAACACGGCTACTTTCCTGCCACGCGAAAGTGCTCAATCGATCCCCTTCTCCTCTAAGAAACTACCAGAAATTTTCAACCATTTTTCAGTGAAGCCAACATCTGAGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCCTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTGGAACAAGAAACGTTGAAGCAATCTCAACGCAGGTATTGGAAGAAGGAGCCACCAAGTACATGCACAACTATACAACAATCCCGGGACTGAAGAAGTTGGTAGGTGACAAAGTCGTTGTGTGTCATAAGGAGAACTATCCCTATGCTGTGTTTCTCTGCCATGCAATAAAACAAACAGAAGCTTATGTTCTCTCCCTGAAAGCCGATGATGGGATGAAGGTGAAAGCAGTAACCATCTGCCATCTAGACACATCAGAATGGGACCCAGAGCATTTGTCCTTCCAAATCCTCAACGTTAAGCCCGGAACCACTCCCATCTGCCATTTCCTTTCCACTGATGCTATTGCCTGGGTTCCAAAACACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

457

Amino Acids

51.35

Weight (kDa)

8.89

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 6 cut(s) 231, 318, 402, 486, 570, 696
Acc36I ACCTGC 1 cut(s) 1018
AccII CGCG 1 cut(s) 798
AciI CCGC 1 cut(s) 47
AclI AACGTT 2 cut(s) 1008, 1290
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 2 cut(s) 372, 456
AcsI RAATTY 7 cut(s) 186, 274, 361, 445, 529, 769, 843
AcuI CTGAAG 1 cut(s) 1106
AfaI GTAC 1 cut(s) 1055
AfiI CCNNNNNNNGG 5 cut(s) 199, 200, 286, 287, 1206
AflII CTTAAG 1 cut(s) 929
AgsI TTSAA 3 cut(s) 774, 850, 1013
AjnI CCWGG 2 cut(s) 922, 1343
AluBI AGCT 6 cut(s) 381, 465, 707, 920, 994, 1178
AluI AGCT 6 cut(s) 381, 465, 707, 920, 994, 1178
Alw21I GWGCWC 1 cut(s) 808
AlwI GGATC 1 cut(s) 808
Ama87I CYCGRG 2 cut(s) 736, 1078
AoxI GGCC 3 cut(s) 372, 456, 925
ApeKI GCWGC 2 cut(s) 44, 68
ApoI RAATTY 7 cut(s) 186, 274, 361, 445, 529, 769, 843
AspLEI GCGC 2 cut(s) 735, 953
AspS9I GGNCC 1 cut(s) 1258
AsuC2I CCSGG 5 cut(s) 737, 738, 1079, 1080, 1299
AsuHPI GGTGA 2 cut(s) 1112, 1228
AsuII TTCGAA 1 cut(s) 989
AvaI CYCGRG 2 cut(s) 736, 1078
AvaII GGWCC 1 cut(s) 1258
BaeGI GKGCMC 1 cut(s) 743
BalI TGGCCA 2 cut(s) 374, 458
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 2 cut(s) 55, 56
BceAI ACGGC 1 cut(s) 795
BciT130I CCWGG 2 cut(s) 924, 1345
BcnI CCSGG 5 cut(s) 737, 738, 1079, 1080, 1299
BfaI CTAG 3 cut(s) 41, 765, 1241
BfrI CTTAAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 1018
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 45, 69
BlsI GCNGC 2 cut(s) 46, 70
Bme1390I CCNGG 7 cut(s) 737, 738, 924, 1079, 1080, 1299, 1345
Bme18I GGWCC 1 cut(s) 1258
BmeT110I CYCGRG 2 cut(s) 736, 1078
BmgT120I GGNCC 1 cut(s) 1258
BmiI GGNNCC 5 cut(s) 1045, 1259, 1260, 1303, 1350
BmrFI CCNGG 7 cut(s) 737, 738, 924, 1079, 1080, 1299, 1345
BmsI GCATC 3 cut(s) 111, 157, 1324
BpmI CTGGAG 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 989
BpuMI CCSGG 5 cut(s) 737, 738, 1079, 1080, 1299
Bsa29I ATCGAT 1 cut(s) 812
BsaJI CCNNGG 3 cut(s) 736, 1078, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 200, 286, 287, 1206
Bse1I ACTGG 2 cut(s) 60, 98
Bse3DI GCAATG 2 cut(s) 194, 281
BseBI CCWGG 2 cut(s) 924, 1345
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 3 cut(s) 736, 1078, 1344
BseGI GGATG 2 cut(s) 148, 1215
BseLI CCNNNNNNNGG 5 cut(s) 199, 200, 286, 287, 1206
BseMI GCAATG 2 cut(s) 194, 281
BseMII CTCAG 2 cut(s) 49, 867
BseNI ACTGG 2 cut(s) 60, 98
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 2 cut(s) 55, 56
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 374, 458, 927
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 736, 1078
BsiSI CCGG 3 cut(s) 737, 1079, 1299
BslFI GGGAC 2 cut(s) 1095, 1271
BslI CCNNNNNNNGG 5 cut(s) 199, 200, 286, 287, 1206
BsmFI GGGAC 2 cut(s) 1095, 1271
BsnI GGCC 3 cut(s) 374, 458, 927
BsoBI CYCGRG 2 cut(s) 736, 1078
Bsp119I TTCGAA 1 cut(s) 989
Bsp1286I GDGCHC 2 cut(s) 743, 808
Bsp143I GATC 2 cut(s) 128, 813
BspACI CCGC 1 cut(s) 47
BspANI GGCC 3 cut(s) 374, 458, 927
BspCNI CTCAG 2 cut(s) 48, 868
BspDI ATCGAT 1 cut(s) 812
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 5 cut(s) 1045, 1259, 1260, 1303, 1350
BspMI ACCTGC 1 cut(s) 1018
BspPI GGATC 1 cut(s) 808
BspT104I TTCGAA 1 cut(s) 989
BspTI CTTAAG 1 cut(s) 929
BsrDI GCAATG 2 cut(s) 194, 281
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 3 cut(s) 736, 1078, 1344
BssMI GATC 2 cut(s) 128, 813
Bst2UI CCWGG 2 cut(s) 924, 1345
Bst4CI ACNGT 1 cut(s) 680
Bst6I CTCTTC 1 cut(s) 903
BstAFI CTTAAG 1 cut(s) 929
BstAPI GCANNNNNTGC 2 cut(s) 50, 65
BstBI TTCGAA 1 cut(s) 989
BstDEI CTNAG 4 cut(s) 35, 703, 828, 876
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 148, 1215
BstFNI CGCG 1 cut(s) 798
BstHHI GCGC 2 cut(s) 735, 953
BstKTI GATC 2 cut(s) 131, 816
BstMBI GATC 2 cut(s) 128, 813
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 2 cut(s) 924, 1345
BstNSI RCATGY 2 cut(s) 733, 1060
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 7 cut(s) 735, 736, 922, 1077, 1078, 1297, 1343
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 55, 56
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 3 cut(s) 374, 458, 927
BsuTUI ATCGAT 1 cut(s) 812
BtsCI GGATG 2 cut(s) 148, 1215
BtsIMutI CAGTG 4 cut(s) 53, 142, 867, 1329
BveI ACCTGC 1 cut(s) 1018
CfoI GCGC 2 cut(s) 735, 953
Cfr13I GGNCC 1 cut(s) 1258
Cfr9I CCCGGG 2 cut(s) 736, 1078
ClaI ATCGAT 1 cut(s) 812
Csp6I GTAC 1 cut(s) 1054
CviAII CATG 4 cut(s) 730, 1057, 1157, 1368
CviQI GTAC 1 cut(s) 1054
DdeI CTNAG 4 cut(s) 35, 703, 828, 876
DpnI GATC 2 cut(s) 130, 815
DpnII GATC 2 cut(s) 128, 813
EaeI YGGCCR 2 cut(s) 372, 456
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco147I AGGCCT 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 1258
Eco57I CTGAAG 1 cut(s) 1106
Eco88I CYCGRG 2 cut(s) 736, 1078
Eco91I GGTNACC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 1258
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 922, 1343
FaeI CATG 4 cut(s) 733, 1060, 1160, 1371
FaqI GGGAC 2 cut(s) 1095, 1271
FatI CATG 4 cut(s) 729, 1056, 1156, 1367
Fnu4HI GCNGC 2 cut(s) 45, 69
FokI GGATG 2 cut(s) 135, 1222
Fsp4HI GCNGC 2 cut(s) 45, 69
FspBI CTAG 3 cut(s) 41, 765, 1241
GlaI GCGC 2 cut(s) 734, 952
GluI GCNGC 2 cut(s) 45, 69
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 3 cut(s) 374, 458, 927
HapII CCGG 3 cut(s) 737, 1079, 1299
HhaI GCGC 2 cut(s) 735, 953
Hin1II CATG 4 cut(s) 733, 1060, 1160, 1371
Hin6I GCGC 2 cut(s) 733, 951
HinP1I GCGC 2 cut(s) 733, 951
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HindIII AAGCTT 2 cut(s) 992, 1176
HinfI GANTC 2 cut(s) 155, 965
HpaII CCGG 3 cut(s) 737, 1079, 1299
HphI GGTGA 2 cut(s) 1112, 1228
Hpy166II GTNNAC 4 cut(s) 140, 214, 301, 683
Hpy188I TCNGA 8 cut(s) 256, 343, 427, 511, 595, 676, 877, 1252
Hpy188III TCNNGA 3 cut(s) 152, 721, 1241
Hpy8I GTNNAC 4 cut(s) 140, 214, 301, 683
HpyAV CCTTC 5 cut(s) 718, 829, 1034, 1207, 1285
HpyCH4III ACNGT 1 cut(s) 680
HpyCH4IV ACGT 8 cut(s) 238, 325, 409, 493, 577, 628, 1008, 1290
HpyCH4V TGCA 7 cut(s) 53, 148, 199, 286, 1060, 1160, 1367
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 4 cut(s) 35, 703, 828, 876
HpySE526I ACGT 8 cut(s) 238, 325, 409, 493, 577, 628, 1008, 1290
Hsp92II CATG 4 cut(s) 733, 1060, 1160, 1371
HspAI GCGC 2 cut(s) 733, 951
KflI GGGWCCC 1 cut(s) 1258
Kzo9I GATC 2 cut(s) 128, 813
LmnI GCTCC 3 cut(s) 656, 925, 1043
Lsp1109I GCAGC 2 cut(s) 55, 56
LweI GCATC 3 cut(s) 111, 157, 1324
MaeI CTAG 3 cut(s) 41, 765, 1241
MaeII ACGT 8 cut(s) 238, 325, 409, 493, 577, 628, 1008, 1290
MaeIII GTNAC 3 cut(s) 635, 1100, 1225
MalI GATC 2 cut(s) 130, 815
MboI GATC 2 cut(s) 128, 813
MboII GAAGA 6 cut(s) 179, 706, 709, 920, 1049, 1099
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 743, 808
MlsI TGGCCA 2 cut(s) 374, 458
MluNI TGGCCA 2 cut(s) 374, 458
MlyI GAGTC 1 cut(s) 149
Mox20I TGGCCA 2 cut(s) 374, 458
MscI TGGCCA 2 cut(s) 374, 458
MseI TTAA 3 cut(s) 894, 930, 1293
MslI CAYNNNNRTG 3 cut(s) 119, 746, 1252
Msp20I TGGCCA 2 cut(s) 374, 458
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 3 cut(s) 737, 1079, 1299
MspR9I CCNGG 7 cut(s) 737, 738, 924, 1079, 1080, 1299, 1345
MvaI CCWGG 2 cut(s) 924, 1345
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 5 cut(s) 737, 738, 1079, 1080, 1299
NdeII GATC 2 cut(s) 128, 813
NlaIII CATG 4 cut(s) 733, 1060, 1160, 1371
NlaIV GGNNCC 5 cut(s) 1045, 1259, 1260, 1303, 1350
NmuCI GTSAC 1 cut(s) 1100
NspI RCATGY 2 cut(s) 733, 1060
NspV TTCGAA 1 cut(s) 989
PceI AGGCCT 1 cut(s) 927
PfeI GAWTC 1 cut(s) 965
PflFI GACNNNGTC 1 cut(s) 1106
PkrI GCNGC 2 cut(s) 46, 70
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 1258
PsiI TTATAA 6 cut(s) 231, 318, 402, 486, 570, 696
Psp1406I AACGTT 2 cut(s) 1008, 1290
Psp5II RGGWCCY 1 cut(s) 1258
Psp6I CCWGG 2 cut(s) 922, 1343
PspEI GGTNACC 1 cut(s) 635
PspGI CCWGG 2 cut(s) 922, 1343
PspN4I GGNNCC 5 cut(s) 1045, 1259, 1260, 1303, 1350
PspPI GGNCC 1 cut(s) 1258
PspPPI RGGWCCY 1 cut(s) 1258
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 1106
RsaI GTAC 1 cut(s) 1055
RsaNI GTAC 1 cut(s) 1054
RseI CAYNNNNRTG 3 cut(s) 119, 746, 1252
SaqAI TTAA 3 cut(s) 894, 930, 1293
SatI GCNGC 2 cut(s) 45, 69
Sau3AI GATC 2 cut(s) 128, 813
Sau96I GGNCC 1 cut(s) 1258
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 7 cut(s) 737, 738, 924, 1079, 1080, 1299, 1345
SduI GDGCHC 2 cut(s) 743, 808
SfaNI GCATC 3 cut(s) 111, 157, 1324
SfuI TTCGAA 1 cut(s) 989
SinI GGWCC 1 cut(s) 1258
SmaI CCCGGG 2 cut(s) 738, 1080
SmiMI CAYNNNNRTG 3 cut(s) 119, 746, 1252
SmlI CTYRAG 1 cut(s) 929
SmoI CTYRAG 1 cut(s) 929
SrfI GCCCGGGC 1 cut(s) 738
SseBI AGGCCT 1 cut(s) 927
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 947
SspMI CTAG 3 cut(s) 41, 765, 1241
StuI AGGCCT 1 cut(s) 927
StyD4I CCNGG 7 cut(s) 735, 736, 922, 1077, 1078, 1297, 1343
TaaI ACNGT 1 cut(s) 680
TaiI ACGT 8 cut(s) 241, 328, 412, 496, 580, 631, 1011, 1293
TaqI TCGA 4 cut(s) 720, 812, 906, 989
TatI WGTACW 1 cut(s) 1053
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 3 cut(s) 894, 930, 1293
Tru9I TTAA 3 cut(s) 894, 930, 1293
TscAI CASTG 4 cut(s) 60, 142, 867, 1336
TseFI GTSAC 1 cut(s) 1100
TseI GCWGC 2 cut(s) 44, 68
Tsp45I GTSAC 1 cut(s) 1100
TspDTI ATGAA 3 cut(s) 180, 764, 1226
TspGWI ACGGA 1 cut(s) 91
TspMI CCCGGG 2 cut(s) 736, 1078
TspRI CASTG 4 cut(s) 60, 142, 867, 1336
Tth111I GACNNNGTC 1 cut(s) 1106
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 1258
XapI RAATTY 7 cut(s) 186, 274, 361, 445, 529, 769, 843
XbaI TCTAGA 1 cut(s) 1240
XceI RCATGY 2 cut(s) 733, 1060
XmaI CCCGGG 2 cut(s) 736, 1078
XspI CTAG 3 cut(s) 41, 765, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.