Rorug05G0572100

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000559
Physical Location & Seq
Reverse (-)
76530559 .. 76534024
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0572100.1

Sequence Viewer

Length: 3102 bp
ATGGCCTTGTGCCCCCAATCAGCCTCTCCATCTTTTCCTTCATCATCAGCTCCTCGATCAAAGCATGATGTGTTTCTCAGCTTTAGGGGTGAAGACACTCGCAAGGGTGTTGTATCCTATTTATACCATGAATTGCAAAACAGAGGAATACAAACATTAATGGATGACCAAGGGCTTGAGCAAGGGATGCCTATTTCTCCAAGTCTCGTAGCTGCAATAGAGGAATCGAGGTATGCAATCGTTCTTCTGTCTCCAAACTATGCTTCTTCTTCATGGTGTTTGGATGAACTTGTGAAGATTCTTCAATGCTCTGAAGCCAAGAAGACACCAGTTCTGCCAATTTTTTATTATGTGAATCCCTGTGATGTGCGACATCAACGGGGAAGTTTTGCAGAAGCCTTCACTAAGCATGAAGAGACGTATGTAGAGAATGTGAAGAAGTGGAGAGCTGCTTTAACACAAGTGGCCAATCTCTCTGGGTTGGATTCAAACAAATTTGGGTCTGACAGAGAACTTGTCCAACGCATTGTGGAACTTGTGCGCCGTGATGTAAGGCCTATTTCAATAATGTCGAGCAGCAATTTTGAAGCATTTGAATCAACAAGAAAAGCCATGAATGAGCTGATGGAGGCATTAGAAGATGATGAGGTCGCTGCCATTGGGGTCTATGGAATGGGAGGGGTTGGGAAGACAACCATGGTGAAACATGTCGGTGCACAATCCCAAAAAATGGGGCTTTTTGATCATCTCAGTATCTTATCAGAAGAAGATGCTTGGAACTTGTTTTTGAAGAAGGCAAGAAAGTCTTTTCAGAAGTCTACCGCTTTCTATGAAGTAGCCAGAAAGGTAGCTCGAGAATGTGCTGGTCTCCCAGTTGCGTTGATAGCAGTTGCGAGGGCACTTGGAGATAAAGATTTTGAAGCCTGGAAAGAAGCAGCTCGAAGACTCGAGATGTCTCAACGTGCCAACCCTGAACAGGACAAAGATGTGTTCAAGTGTATAAAGTTGAGCTATGATTACCTGGATGATAATGCCGATGTGTCCAGAAGTCAAGCCAAGTATTGCTTCTTGCTCTGCTGCCTATTCCCAGAAGATTATGATATCCAAATAGAAGACATTATGAAGTATGTCTTCGGAACAGGATTGTTTCGAGATGACTACAGCACAATAGAGAATTCCAGAGCCAACGCAAAATCAGTGATTGACCACCTTAAAGATTCTTGTTTGCTTTTGGACGGTTCAAAGGTCGGATGTATAAAGATGCACGATGTCATTCGAGATATTGCCGTGTCCATTGCATCAGATGGCCAACATTTTTTGGTGAAAACTCGTTGTGATTTAAAAGATTGGCCGATGGATGCGCATGAGGGCTACTCAGCAATCTCACTAATTGAGAGCAACATTTGCAAGCTTCCCAACAAGTTGGTATGTTCAAAACTTCAGATTTTATTGCTACAACAAAATGCTTGTATAATAAAGATCCCAAAAACCTTTTTTCAATGTCCCAATGATTTAAGGGTCTTAGATCTTAGCAATACTGGCATTTCATCACTGCCCCCATCATTCAGTCTCCTAACCACACTCCAAGCTTTGCAATTAGATAATTGCCGGTACCTTAGGGACATATCCATACTTAGAAAACTGAAAAAGCTCGAGATTCTTAGTATGAGAGACTGTTCTATTAAGAAATTTCCAAAAGAGATAGGAAATTTGACCAAATTAAGAATGCTGGACTTGACCAAAACTAGTTTTGAGACAGTTCCCTCTCAAGTGATAACAAGGTTGTATAGACTAGAAGAACTGTACATGAACTATAGTTTTGGCTACTGGGGTAGTAAAGTTAAGGGAGGCTTGTTGTGTTTTCTTGGTAAGAATGCTGACTTTGATGAGTTAACTGTCTTGTCACGTTTAAACACTTTGGAGGTTTCCGTATATGGTGTAGAATGTTTGCCTCAAAATGTTGAGCCCATTCCAAATTGGGTCAACTTTTATATACGTATCAGAAGATTCGGGTTCAGAAATTCCACTAGGGGAGATCACATTCCACATCCTTCTTCAAGAGCATTGATCATTGACACAACCATGAATAACTTACCCAATTGGTTCATCAGTGTGGTGACAGAAAAAACAGAGGATTTATGGTACAACTGCTGCAATGGCTTAACTAACCTTCTCGAGGAACACGACCGTGGGAGATTACATGGACTCAAGTATCTTTGTATAGAATCTGTATATGCAGAAGTGTTGTTCAACACAATAACATGGCCTAAGGGGTCAAATGAACCTGTGTTTGAGCACCTGGAAGAGTTGAAAATCTATTTCGGGCATTGCCTGGAGGAGCTTTGTGTTGGTGATTTACCACCTGACTCTGTACGTAATCTTAAGATATTGAATGTGCAATCTTGTTCTAGGTTGGTGAAACCACTTTTACCGTCAAAGTTGTTGCACAGATTACAGAGTCTGGAAAAACTAGTATGTTCTTATGTAGTTATGAATTATGTGTTTGGATTTGAAGGGGATGAACCACAACACGTTGTCTTTACAAAGTTGAGAATGATTTCACTGAGACAAATGTACCGGCTAATAAACATATGGAATGGTCCTGCTCCACCTGGAATCTTCCAGAGCCTCAAAATCTTTTACTTGAAGGATTGCCCAATACTGAAATATCTCTTCACATCTGAAGTAGCTCGATGTCTTTTGCAATTGGAAGACGTTTGGGTAGAGTGTTGTAGTAGATTGGACAGACTAATTGAAGCAACTGAGGAAACAGAGAGCAACAAGATTGTTCTTCCACAATTGAAAAACCTAGTTTTGAAACGTCTTCTAAAGCTCACAAGGTTCTCCAGTACCAGCAGCAGTACTATTATTATTGAAATCGAGTGCCCTTCATTGCAACACTTGTACGTGGATGAGTGCCCCTGGGTTACAATCTCTGCATCTGACTTCAGCAGCAGAAACCAAGTCCCCTGGTTTCCAATCTCTGCTTCTGGCATCAGCAGCAGAAACCAAGTCCAACTAAATGATCACCAACATATGGGCACACTACGGGGAAGGATCGACAATGAATCAAGGCTCTCACACTTTCCACTCTGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

1033

Amino Acids

117.69

Weight (kDa)

6.89

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 192 5.6e-51 TIR domain
TIR_2 PF13676 24 - 119 6.5e-16 TIR domain
NB-ARC PF00931 203 - 249 2.8e-06 NB-ARC domain
LRR_8 PF13855 479 - 537 6.5e-07 Leucine rich repeat
LRR_14 PF23598 531 - 647 6e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 767 - 911 3.6e-22 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1362
Acc65I GGTACC 1 cut(s) 1611
AccB1I GGYRCC 1 cut(s) 1611
AccB7I CCANNNNNTGG 2 cut(s) 730, 3037
AccI GTMKAC 1 cut(s) 818
AciI CCGC 1 cut(s) 822
AclWI GGATC 2 cut(s) 1474, 3065
AcoI YGGCCR 3 cut(s) 465, 1306, 1349
AcsI RAATTY 5 cut(s) 494, 1174, 1688, 1708, 2020
AcuI CTGAAG 4 cut(s) 333, 1424, 2703, 2932
AfaI GTAC 8 cut(s) 1613, 1805, 2144, 2373, 2576, 2851, 2863, 2906
AfiI CCNNNNNNNGG 4 cut(s) 730, 976, 2176, 3037
AflII CTTAAG 1 cut(s) 2381
AflIII ACRYGT 2 cut(s) 706, 2530
AhlI ACTAGT 2 cut(s) 1745, 2470
AjiI CACGTC 1 cut(s) 3099
AjnI CCWGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
AjuI GAANNNNNNNTTGG 6 cut(s) 247, 279, 1049, 1081, 2971, 3003
AleI CACNNNNGTG 1 cut(s) 2187
Alw21I GWGCWC 2 cut(s) 718, 2298
Alw26I GTCTC 9 cut(s) 209, 255, 410, 872, 960, 1574, 1665, 1748, 2560
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 2 cut(s) 1474, 3065
AlwNI CAGNNNCTG 1 cut(s) 2461
Ama87I CYCGRG 4 cut(s) 852, 947, 1652, 2174
AoxI GGCC 6 cut(s) 3, 465, 554, 1306, 1349, 2264
ApaLI GTGCAC 1 cut(s) 714
ApoI RAATTY 5 cut(s) 494, 1174, 1688, 1708, 2020
AseI ATTAAT 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 2557
Asp718I GGTACC 1 cut(s) 1611
AspLEI GCGC 2 cut(s) 543, 1363
AspS9I GGNCC 1 cut(s) 2600
AsuHPI GGTGA 7 cut(s) 101, 712, 1333, 2128, 2363, 2428, 3020
AvaI CYCGRG 4 cut(s) 852, 947, 1652, 2174
AvaII GGWCC 1 cut(s) 2600
AxyI CCTNAGG 2 cut(s) 1616, 2268
BaeGI GKGCMC 6 cut(s) 14, 718, 901, 2888, 2921, 3044
BaeI ACNNNNGTAYC 4 cut(s) 2195, 2228, 2558, 2591
BalI TGGCCA 2 cut(s) 467, 1308
BanI GGYRCC 1 cut(s) 1611
BanII GRGCYC 1 cut(s) 1968
BbsI GAAGAC 8 cut(s) 99, 329, 695, 949, 1119, 1123, 2718, 2816
Bbv12I GWGCWC 2 cut(s) 718, 2298
BccI CCATC 5 cut(s) 37, 619, 1298, 1348, 1567
BceAI ACGGC 2 cut(s) 528, 1271
BciT130I CCWGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 3 cut(s) 742, 2067, 3025
BcoDI GTCTC 9 cut(s) 209, 255, 410, 872, 960, 1574, 1665, 1748, 2560
BcuI ACTAGT 2 cut(s) 1745, 2470
BfaI CTAG 6 cut(s) 1746, 1793, 2028, 2409, 2471, 2810
BfmI CTRYAG 2 cut(s) 1159, 1813
BfrI CTTAAG 1 cut(s) 2381
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 1 cut(s) 1525
BmcAI AGTACT 1 cut(s) 2863
Bme1390I CCNGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
Bme18I GGWCC 1 cut(s) 2600
BmeT110I CYCGRG 4 cut(s) 852, 947, 1652, 2174
BmgBI CACGTC 1 cut(s) 3099
BmgT120I GGNCC 1 cut(s) 2600
BmiI GGNNCC 1 cut(s) 1613
BmrFI CCNGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
BmrI ACTGGG 2 cut(s) 866, 1837
BmsI GCATC 7 cut(s) 177, 760, 1251, 1307, 1348, 2948, 3003
BmuI ACTGGG 2 cut(s) 866, 1837
BpiI GAAGAC 8 cut(s) 99, 329, 695, 949, 1119, 1123, 2718, 2816
BplI GAGNNNNNCTC 2 cut(s) 1358, 1390
BpmI CTGGAG 2 cut(s) 2354, 2830
BpuEI CTTGAG 3 cut(s) 197, 1752, 2192
BsaAI YACGTR 3 cut(s) 1997, 2375, 2908
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 6 cut(s) 169, 696, 2188, 2921, 2922, 2969
Bsc4I CCNNNNNNNGG 4 cut(s) 730, 976, 2176, 3037
Bse118I RCCGGY 2 cut(s) 1608, 2577
Bse1I ACTGG 5 cut(s) 329, 872, 1543, 1832, 2847
Bse21I CCTNAGG 2 cut(s) 1616, 2268
Bse3DI GCAATG 4 cut(s) 1293, 2161, 2326, 2891
BseBI CCWGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
BseDI CCNNGG 6 cut(s) 169, 696, 2188, 2921, 2922, 2969
BseGI GGATG 9 cut(s) 169, 192, 289, 1030, 1256, 1363, 2047, 2524, 2917
BseLI CCNNNNNNNGG 4 cut(s) 730, 976, 2176, 3037
BseMI GCAATG 4 cut(s) 1293, 2161, 2326, 2891
BseMII CTCAG 5 cut(s) 91, 763, 1389, 2555, 2754
BseNI ACTGG 5 cut(s) 329, 872, 1543, 1832, 2847
BseRI GAGGAG 2 cut(s) 42, 2351
BseSI GKGCMC 6 cut(s) 14, 718, 901, 2888, 2921, 3044
Bsh1285I CGRYCG 1 cut(s) 2188
BshFI GGCC 6 cut(s) 5, 467, 556, 1308, 1351, 2266
BshNI GGYRCC 1 cut(s) 1611
BsiEI CGRYCG 1 cut(s) 2188
BsiHKAI GWGCWC 2 cut(s) 718, 2298
BsiHKCI CYCGRG 4 cut(s) 852, 947, 1652, 2174
BsiSI CCGG 2 cut(s) 1609, 2578
BslFI GGGAC 3 cut(s) 1488, 1634, 2951
BslI CCNNNNNNNGG 4 cut(s) 730, 976, 2176, 3037
BsmAI GTCTC 9 cut(s) 209, 255, 410, 872, 960, 1574, 1665, 1748, 2560
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 3 cut(s) 1488, 1634, 2951
BsmI GAATGC 2 cut(s) 1731, 1879
BsnI GGCC 6 cut(s) 5, 467, 556, 1308, 1351, 2266
Bso31I GGTCTC 1 cut(s) 872
BsoBI CYCGRG 4 cut(s) 852, 947, 1652, 2174
Bsp1286I GDGCHC 8 cut(s) 14, 718, 901, 1968, 2298, 2888, 2921, 3044
Bsp1407I TGTACA 1 cut(s) 1803
Bsp143I GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 1 cut(s) 822
BspANI GGCC 6 cut(s) 5, 467, 556, 1308, 1351, 2266
BspCNI CTCAG 5 cut(s) 90, 762, 1388, 2556, 2755
BspLI GGNNCC 1 cut(s) 1613
BspPI GGATC 2 cut(s) 1474, 3065
BspT107I GGYRCC 1 cut(s) 1611
BspTI CTTAAG 1 cut(s) 2381
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 4 cut(s) 1293, 2161, 2326, 2891
BsrFI RCCGGY 2 cut(s) 1608, 2577
BsrGI TGTACA 1 cut(s) 1803
BsrI ACTGG 5 cut(s) 329, 872, 1543, 1832, 2847
BssAI RCCGGY 2 cut(s) 1608, 2577
BssECI CCNNGG 6 cut(s) 169, 696, 2188, 2921, 2922, 2969
BssMI GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
BssT1I CCWWGG 2 cut(s) 169, 696
Bst2UI CCWGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
Bst4CI ACNGT 7 cut(s) 1238, 1676, 1759, 1803, 1897, 2189, 2433
Bst6I CTCTTC 3 cut(s) 408, 2298, 2678
BstAFI CTTAAG 1 cut(s) 2381
BstAPI GCANNNNNTGC 2 cut(s) 187, 1404
BstAUI TGTACA 1 cut(s) 1803
BstBAI YACGTR 3 cut(s) 1997, 2375, 2908
BstC8I GCNNGC 1 cut(s) 1409
BstDSI CCRYGG 2 cut(s) 696, 2188
BstENI CCTNNNNNAGG 1 cut(s) 2174
BstF5I GGATG 9 cut(s) 169, 192, 289, 1030, 1256, 1363, 2047, 2524, 2917
BstHHI GCGC 2 cut(s) 543, 1363
BstKTI GATC 8 cut(s) 59, 745, 1482, 1528, 2038, 2070, 3028, 3060
BstMAI GTCTC 9 cut(s) 209, 255, 410, 872, 960, 1574, 1665, 1748, 2560
BstMBI GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
BstMCI CGRYCG 1 cut(s) 2188
BstMWI GCNNNNNNNGC 6 cut(s) 187, 884, 1404, 1539, 2157, 3000
BstNI CCWGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
BstSFI CTRYAG 2 cut(s) 1159, 1813
BstSLI GKGCMC 6 cut(s) 14, 718, 901, 2888, 2921, 3044
BstSNI TACGTA 2 cut(s) 1997, 2375
BstV2I GAAGAC 8 cut(s) 99, 329, 695, 949, 1119, 1123, 2718, 2816
BstX2I RGATCY 2 cut(s) 1479, 1525
BstXI CCANNNNNNTGG 1 cut(s) 1423
BstYI RGATCY 2 cut(s) 1479, 1525
Bsu36I CCTNAGG 2 cut(s) 1616, 2268
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 6 cut(s) 5, 467, 556, 1308, 1351, 2266
BtgI CCRYGG 2 cut(s) 696, 2188
BtrI CACGTC 1 cut(s) 3099
BtsCI GGATG 9 cut(s) 169, 192, 289, 1030, 1256, 1363, 2047, 2524, 2917
BtsI GCAGTG 1 cut(s) 1550
BtsIMutI CAGTG 4 cut(s) 1203, 1550, 2116, 2561
Cac8I GCNNGC 1 cut(s) 1409
CaiI CAGNNNCTG 1 cut(s) 2461
CfoI GCGC 2 cut(s) 543, 1363
Cfr10I RCCGGY 2 cut(s) 1608, 2577
Cfr13I GGNCC 1 cut(s) 2600
Csp6I GTAC 8 cut(s) 1612, 1804, 2143, 2372, 2575, 2850, 2862, 2905
CviQI GTAC 8 cut(s) 1612, 1804, 2143, 2372, 2575, 2850, 2862, 2905
DpnI GATC 8 cut(s) 58, 744, 1481, 1527, 2037, 2069, 3027, 3059
DpnII GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
DraI TTTAAA 2 cut(s) 1341, 1911
EaeI YGGCCR 3 cut(s) 465, 1306, 1349
Eam1104I CTCTTC 3 cut(s) 408, 2298, 2678
EarI CTCTTC 3 cut(s) 408, 2298, 2678
Eco105I TACGTA 2 cut(s) 1997, 2375
Eco130I CCWWGG 2 cut(s) 169, 696
Eco147I AGGCCT 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 1968
Eco31I GGTCTC 1 cut(s) 872
Eco32I GATATC 1 cut(s) 1102
Eco47I GGWCC 1 cut(s) 2600
Eco57I CTGAAG 4 cut(s) 333, 1424, 2703, 2932
Eco81I CCTNAGG 2 cut(s) 1616, 2268
Eco88I CYCGRG 4 cut(s) 852, 947, 1652, 2174
EcoNI CCTNNNNNAGG 1 cut(s) 2174
EcoRI GAATTC 1 cut(s) 1174
EcoRII CCWGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 2 cut(s) 169, 696
EcoT38I GRGCYC 1 cut(s) 1968
ErhI CCWWGG 2 cut(s) 169, 696
Esp3I CGTCTC 1 cut(s) 410
FalI AAGNNNNNCTT 8 cut(s) 790, 822, 1049, 1081, 1115, 1147, 1835, 1867
FaqI GGGAC 3 cut(s) 1488, 1634, 2951
FauNDI CATATG 2 cut(s) 2591, 3036
FbaI TGATCA 3 cut(s) 742, 2067, 3025
FblI GTMKAC 1 cut(s) 818
FokI GGATG 9 cut(s) 176, 199, 296, 1037, 1263, 1370, 2034, 2531, 2924
FriOI GRGCYC 1 cut(s) 1968
FspAI RTGCGCAY 1 cut(s) 1362
FspBI CTAG 6 cut(s) 1746, 1793, 2028, 2409, 2471, 2810
FspI TGCGCA 1 cut(s) 1362
GlaI GCGC 2 cut(s) 542, 1362
GsuI CTGGAG 2 cut(s) 2354, 2830
HaeIII GGCC 6 cut(s) 5, 467, 556, 1308, 1351, 2266
HapII CCGG 2 cut(s) 1609, 2578
HhaI GCGC 2 cut(s) 543, 1363
Hin6I GCGC 2 cut(s) 541, 1361
HinP1I GCGC 2 cut(s) 541, 1361
HincII GTYRAC 2 cut(s) 1893, 1984
HindII GTYRAC 2 cut(s) 1893, 1984
HindIII AAGCTT 2 cut(s) 1409, 1587
HpaI GTTAAC 1 cut(s) 1893
HpaII CCGG 2 cut(s) 1609, 2578
HphI GGTGA 7 cut(s) 101, 712, 1333, 2128, 2363, 2428, 3020
Hpy166II GTNNAC 4 cut(s) 716, 819, 1893, 1984
Hpy8I GTNNAC 4 cut(s) 716, 819, 1893, 1984
HpyAV CCTTC 9 cut(s) 48, 409, 787, 2061, 2180, 2507, 2641, 2898, 3048
HpyCH4III ACNGT 7 cut(s) 1238, 1676, 1759, 1803, 1897, 2189, 2433
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 884, 1404, 1539, 2157, 3000
HspAI GCGC 2 cut(s) 541, 1361
KpnI GGTACC 1 cut(s) 1615
Ksp22I TGATCA 3 cut(s) 742, 2067, 3025
KspAI GTTAAC 1 cut(s) 1893
Kzo9I GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
LmnI GCTCC 3 cut(s) 55, 2338, 2611
LweI GCATC 7 cut(s) 177, 760, 1251, 1307, 1348, 2948, 3003
MaeI CTAG 6 cut(s) 1746, 1793, 2028, 2409, 2471, 2810
MaeIII GTNAC 3 cut(s) 1902, 2116, 2926
MalI GATC 8 cut(s) 58, 744, 1481, 1527, 2037, 2069, 3027, 3059
MboI GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
MfeI CAATTG 3 cut(s) 2098, 2705, 2798
MflI RGATCY 2 cut(s) 1479, 1525
MhlI GDGCHC 8 cut(s) 14, 718, 901, 1968, 2298, 2888, 2921, 3044
MlsI TGGCCA 2 cut(s) 467, 1308
MluNI TGGCCA 2 cut(s) 467, 1308
MlyI GAGTC 4 cut(s) 939, 2199, 2360, 2467
MmeI TCCRAC 4 cut(s) 462, 544, 1228, 3040
Mox20I TGGCCA 2 cut(s) 467, 1308
MroXI GAANNNNTTC 1 cut(s) 2557
MscI TGGCCA 2 cut(s) 467, 1308
MslI CAYNNNNRTG 4 cut(s) 711, 2081, 2111, 2187
Msp20I TGGCCA 2 cut(s) 467, 1308
MspCI CTTAAG 1 cut(s) 2381
MspI CCGG 2 cut(s) 1609, 2578
MspR9I CCNGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
MssI GTTTAAAC 1 cut(s) 1911
MunI CAATTG 3 cut(s) 2098, 2705, 2798
Mva1269I GAATGC 2 cut(s) 1731, 1879
MvaI CCWGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
MwoI GCNNNNNNNGC 6 cut(s) 187, 884, 1404, 1539, 2157, 3000
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 2 cut(s) 2591, 3036
NdeII GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
NlaIV GGNNCC 1 cut(s) 1613
NmuCI GTSAC 2 cut(s) 1902, 2116
NsbI TGCGCA 1 cut(s) 1362
NspI RCATGY 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 2187
PaeR7I CTCGAG 4 cut(s) 852, 947, 1652, 2174
PasI CCCWGGG 1 cut(s) 2922
PceI AGGCCT 1 cut(s) 556
PciI ACATGT 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 2181
PctI GAATGC 2 cut(s) 1731, 1879
PdmI GAANNNNTTC 1 cut(s) 2557
PflMI CCANNNNNTGG 2 cut(s) 730, 3037
PleI GAGTC 4 cut(s) 939, 2199, 2360, 2466
PmeI GTTTAAAC 1 cut(s) 1911
PpsI GAGTC 4 cut(s) 939, 2199, 2360, 2466
Ppu21I YACGTR 3 cut(s) 1997, 2375, 2908
PscI ACATGT 1 cut(s) 706
PshBI ATTAAT 1 cut(s) 158
Psp6I CCWGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
PspGI CCWGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
PspN4I GGNNCC 1 cut(s) 1613
PspPI GGNCC 1 cut(s) 2600
PstNI CAGNNNCTG 1 cut(s) 2461
PsuI RGATCY 2 cut(s) 1479, 1525
RsaI GTAC 8 cut(s) 1613, 1805, 2144, 2373, 2576, 2851, 2863, 2906
RsaNI GTAC 8 cut(s) 1612, 1804, 2143, 2372, 2575, 2850, 2862, 2905
RseI CAYNNNNRTG 4 cut(s) 711, 2081, 2111, 2187
Sau3AI GATC 8 cut(s) 56, 742, 1479, 1525, 2035, 2067, 3025, 3057
Sau96I GGNCC 1 cut(s) 2600
ScaI AGTACT 1 cut(s) 2863
SchI GAGTC 4 cut(s) 939, 2199, 2360, 2467
ScrFI CCNGG 7 cut(s) 925, 1022, 2300, 2333, 2613, 2923, 2971
SduI GDGCHC 8 cut(s) 14, 718, 901, 1968, 2298, 2888, 2921, 3044
SfaNI GCATC 7 cut(s) 177, 760, 1251, 1307, 1348, 2948, 3003
SfcI CTRYAG 2 cut(s) 1159, 1813
Sfr274I CTCGAG 4 cut(s) 852, 947, 1652, 2174
SinI GGWCC 1 cut(s) 2600
SlaI CTCGAG 4 cut(s) 852, 947, 1652, 2174
SmiMI CAYNNNNRTG 4 cut(s) 711, 2081, 2111, 2187
SmlI CTYRAG 8 cut(s) 176, 852, 947, 1652, 1767, 2174, 2207, 2381
SmoI CTYRAG 8 cut(s) 176, 852, 947, 1652, 1767, 2174, 2207, 2381
SnaBI TACGTA 2 cut(s) 1997, 2375
SpeI ACTAGT 2 cut(s) 1745, 2470
SseBI AGGCCT 1 cut(s) 556
SsiI CCGC 1 cut(s) 822
SspMI CTAG 6 cut(s) 1746, 1793, 2028, 2409, 2471, 2810
StuI AGGCCT 1 cut(s) 556
StyD4I CCNGG 7 cut(s) 923, 1020, 2298, 2331, 2611, 2921, 2969
StyI CCWWGG 2 cut(s) 169, 696
TaaI ACNGT 7 cut(s) 1238, 1676, 1759, 1803, 1897, 2189, 2433
TatI WGTACW 2 cut(s) 1803, 2861
TscAI CASTG 4 cut(s) 1203, 1557, 2116, 2568
TseFI GTSAC 2 cut(s) 1902, 2116
Tsp45I GTSAC 2 cut(s) 1902, 2116
TspGWI ACGGA 1 cut(s) 1918
TspRI CASTG 4 cut(s) 1203, 1557, 2116, 2568
Van91I CCANNNNNTGG 2 cut(s) 730, 3037
Vha464I CTTAAG 1 cut(s) 2381
VneI GTGCAC 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 2600
VspI ATTAAT 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 2174
XapI RAATTY 5 cut(s) 494, 1174, 1688, 1708, 2020
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 4 cut(s) 852, 947, 1652, 2174
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 2557
XspI CTAG 6 cut(s) 1746, 1793, 2028, 2409, 2471, 2810
ZrmI AGTACT 1 cut(s) 2863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.