RLG00000028095

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000559
Physical Location & Seq
Forward (+)
18628070 .. 18633653
5584 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028095

Sequence Viewer

Length: 963 bp
ATGGACCAGTTTCGTCTTCTTTGGCTGTTTGCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATTGGGTATTCTAATAATAAGGTCGGTGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCATTGCCTTCCAAAGCTGTACAACAAATTCTAAACCTTGCAGAAGGTGAAAGAAGTTACAGTGGGATTGGAAAGGATGATTCTGTAGGACTTGCCTCCAGGAGGTGTTTTAGATGTTATGGTGGGATTGGTGGCTCTACAGAAGAAGTCAAAGTGAAGCCAGGTTTAACTACATACTTCCAAGAGAAAGATCTTCAGCATTTGGGAAAAACGGTGACATTGCAATTCTTGAAACCCACAGATAACAACGCAACTCTTTTGCCTCGTCAAGTTGTAAAGTCCATACCCTTTTCAAGCAACAAGTTGCCAGAAATTCTAATATACTTTGGAGTGAAACCCATGTCAGCGGTTGCAGAAATAATGAAAAGCACAATCGAAGAGTGTGAGGCACCGGCAATTAAAGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATCGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAACAATAACGAAAACAAACAAGAATATAGCATTGACATTACTGGAGTCCAAAGTATAGGAGACAGCTCGGTTGTGTGCCATAAGGAGAGCTATGTGTATGGTGTGTTTTACTGCCACAAATTCAATAACACAAGGGCTTACATGGTTCCGTTGGTTGGTGCTGATGGAGTTGCAAAAGTTAAAGCATTCGTTGTTTGCCATACTGACACCACTAGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCGCTGTCTGTCATTTTCTAGCCACTACCGGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

321

Amino Acids

35.36

Weight (kDa)

8.48

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 105 - 319 5.4e-77 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 855
AciI CCGC 1 cut(s) 485
AcsI RAATTY 4 cut(s) 118, 165, 450, 758
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 3 cut(s) 159, 554, 611
AfiI CCNNNNNNNGG 3 cut(s) 240, 794, 855
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 5 cut(s) 370, 432, 597, 763, 881
AjnI CCWGG 4 cut(s) 101, 236, 298, 898
AluBI AGCT 6 cut(s) 125, 155, 601, 705, 729, 855
AluI AGCT 6 cut(s) 125, 155, 601, 705, 729, 855
Alw26I GTCTC 1 cut(s) 693
AoxI GGCC 2 cut(s) 633, 873
ApoI RAATTY 4 cut(s) 118, 165, 450, 758
AsiGI ACCGGT 1 cut(s) 938
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 101, 197, 364
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 8, 552
BccI CCATC 2 cut(s) 86, 797
BciT130I CCWGG 4 cut(s) 103, 238, 300, 900
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 2 cut(s) 852, 929
BfmI CTRYAG 2 cut(s) 222, 276
BglII AGATCT 1 cut(s) 328
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 4 cut(s) 103, 238, 300, 900
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 528, 786, 860, 954
BmrFI CCNGG 4 cut(s) 103, 238, 300, 900
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 8, 552
BpmI CTGGAG 2 cut(s) 220, 702
Bpu10I CCTNAGC 1 cut(s) 864
Bsa29I ATCGAT 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 630
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 794, 855
Bse118I RCCGGY 2 cut(s) 529, 938
Bse1I ACTGG 3 cut(s) 7, 119, 685
Bse3DI GCAATG 2 cut(s) 140, 356
BseBI CCWGG 4 cut(s) 103, 238, 300, 900
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 2 cut(s) 111, 220
BseLI CCNNNNNNNGG 3 cut(s) 240, 794, 855
BseMI GCAATG 2 cut(s) 140, 356
BseNI ACTGG 3 cut(s) 7, 119, 685
BshFI GGCC 2 cut(s) 635, 875
BshNI GGYRCC 1 cut(s) 526
BshTI ACCGGT 1 cut(s) 938
BshVI ATCGAT 1 cut(s) 582
BsiSI CCGG 2 cut(s) 530, 939
BslI CCNNNNNNNGG 3 cut(s) 240, 794, 855
BsmAI GTCTC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 2 cut(s) 635, 875
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 328, 579
BspACI CCGC 1 cut(s) 485
BspANI GGCC 2 cut(s) 635, 875
BspDI ATCGAT 1 cut(s) 582
BspLI GGNNCC 4 cut(s) 528, 786, 860, 954
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 140, 356
BsrFI RCCGGY 2 cut(s) 529, 938
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 3 cut(s) 7, 119, 685
BssAI RCCGGY 2 cut(s) 529, 938
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 2 cut(s) 328, 579
Bst2UI CCWGG 4 cut(s) 103, 238, 300, 900
Bst4CI ACNGT 3 cut(s) 200, 352, 592
Bst6I CTCTTC 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 864
BstENI CCTNNNNNAGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 111, 220
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 2 cut(s) 331, 582
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 2 cut(s) 328, 579
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 4 cut(s) 103, 238, 300, 900
BstSCI CCNGG 4 cut(s) 101, 236, 298, 898
BstSFI CTRYAG 2 cut(s) 222, 276
BstV2I GAAGAC 2 cut(s) 8, 552
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 2 cut(s) 635, 875
BsuTUI ATCGAT 1 cut(s) 582
BtsCI GGATG 2 cut(s) 111, 220
BtsIMutI CAGTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 2 cut(s) 529, 938
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 3 cut(s) 158, 553, 610
CspAI ACCGGT 1 cut(s) 938
CviAII CATG 2 cut(s) 478, 781
CviQI GTAC 3 cut(s) 158, 553, 610
DdeI CTNAG 1 cut(s) 864
DpnI GATC 2 cut(s) 330, 581
DpnII GATC 2 cut(s) 328, 579
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 4 cut(s) 101, 236, 298, 898
FaeI CATG 2 cut(s) 481, 784
FatI CATG 2 cut(s) 477, 780
FokI GGATG 2 cut(s) 118, 227
FspBI CTAG 2 cut(s) 852, 929
FspI TGCGCA 1 cut(s) 559
GlaI GCGC 1 cut(s) 559
GsuI CTGGAG 2 cut(s) 220, 702
HaeIII GGCC 2 cut(s) 635, 875
HapII CCGG 2 cut(s) 530, 939
HhaI GCGC 1 cut(s) 560
Hin1II CATG 2 cut(s) 481, 784
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 3 cut(s) 218, 572, 684
HpaII CCGG 2 cut(s) 530, 939
HphI GGTGA 3 cut(s) 101, 197, 364
Hpy188III TCNNGA 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 156, 176
HpyCH4III ACNGT 3 cut(s) 200, 352, 592
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 6 cut(s) 32, 179, 361, 491, 626, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 2 cut(s) 481, 784
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 2 cut(s) 328, 579
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 852, 929
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 194, 352
MalI GATC 2 cut(s) 330, 581
MboI GATC 2 cut(s) 328, 579
MboII GAAGA 5 cut(s) 8, 293, 323, 527, 557
MflI RGATCY 1 cut(s) 328
MluCI AATT 8 cut(s) 33, 63, 118, 165, 362, 450, 534, 758
MlyI GAGTC 1 cut(s) 693
MnlI CCTC 6 cut(s) 234, 244, 411, 517, 625, 896
MseI TTAA 3 cut(s) 305, 537, 819
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 2 cut(s) 530, 939
MspR9I CCNGG 4 cut(s) 103, 238, 300, 900
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 4 cut(s) 103, 238, 300, 900
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeII GATC 2 cut(s) 328, 579
NlaIII CATG 2 cut(s) 481, 784
NlaIV GGNNCC 4 cut(s) 528, 786, 860, 954
NmuCI GTSAC 1 cut(s) 352
NsbI TGCGCA 1 cut(s) 559
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 2 cut(s) 218, 572
PflMI CCANNNNNTGG 1 cut(s) 855
PfoI TCCNGGA 2 cut(s) 101, 236
PinAI ACCGGT 1 cut(s) 938
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 4 cut(s) 101, 236, 298, 898
PspGI CCWGG 4 cut(s) 101, 236, 298, 898
PspN4I GGNNCC 4 cut(s) 528, 786, 860, 954
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 3 cut(s) 159, 554, 611
RsaNI GTAC 3 cut(s) 158, 553, 610
SaqAI TTAA 3 cut(s) 305, 537, 819
Sau3AI GATC 2 cut(s) 328, 579
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 693
ScrFI CCNGG 4 cut(s) 103, 238, 300, 900
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 2 cut(s) 222, 276
SinI GGWCC 1 cut(s) 4
Sse9I AATT 8 cut(s) 33, 63, 118, 165, 362, 450, 534, 758
SsiI CCGC 1 cut(s) 485
SspMI CTAG 2 cut(s) 852, 929
StyD4I CCNGG 4 cut(s) 101, 236, 298, 898
TaaI ACNGT 3 cut(s) 200, 352, 592
TaiI ACGT 1 cut(s) 615
TaqI TCGA 2 cut(s) 513, 582
TasI AATT 8 cut(s) 33, 63, 118, 165, 362, 450, 534, 758
TatI WGTACW 2 cut(s) 157, 552
TfiI GAWTC 2 cut(s) 218, 572
Tru1I TTAA 3 cut(s) 305, 537, 819
Tru9I TTAA 3 cut(s) 305, 537, 819
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 515
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 855
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 238
XapI RAATTY 4 cut(s) 118, 165, 450, 758
XspI CTAG 2 cut(s) 852, 929
ZrmI AGTACT 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.