Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Forward (+)

38140944 .. 38142420

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G453700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGATCTGTTTCTCACACATAATTGCTTTTCTCACCCTCACACTGGTGGCGAGGGCAAGCTATGCTGCTGCTGCTAGAGATACCACCTCAACTTTACCACCTCAACTTCACTACTGGAACTCTGTCTTCCCAGGCACAACAATGCCAAAAGCTCTCAGTGAACTCGTCCAACCTGACTCAGTCGAGCCACCCAAGAACTTTGTCGGTTACAACCAGCACGGTGTCGAGGACAGAACTCTCTCCGTCTACACCCAAGACGACGATACGCACCTCAAAGACCCAACCCAAAGAATTTTCTTCTTGGAGAAGGAAATAAAACCTGGCACAACCATGAAATATAGCTTGGGTAGAAATATAGCAGGGGAAACTTTCCTGCCCCGTAAAACTGCAGAATCGATCCCCTTCTCATCCGCCAAACTACCAGAAATTCTCAACAAATTTGCTATGAAGCCGGGGTCTGTGGAAGCCACTGTAATTCAGGAAACCATTCAAGATTGTGAAAGTGAAGTCCTTAGAGGAGAAGACAGATACTGCGCCACCTCCTTGGAGTCAATGGTTGACTTCGCCATGTCCAAGCTGGGAAGAAACGTTCAAGCAATCTCGACAGAGGTCGAAAAGGGAGCCACCCTGCAGAACTACACAGTAAAGCCAGGCGTGAAGAACGTGAACGAAGGTGGCAATTTCATTTTGTGTCACAAGCTGACCTACGCGTATGCTGTCTTCTTTTGCCACACATTTGGACAAACTAGGGCTTATGCGGTGCCTCTGCAAGGTGCTGACGGAACGACCGCTAACGCAGTAGCAATCTGCCACCTGGACACATCTGCATGGAACCCCAAGAATCATCCCTTACAAGAGGTCAAAGTTAAGCCAGGAACCGTTCCGGTCTGCCATTATCTTCCCCAGGGTCATATTGCTTGGGTTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

312

Amino Acids

34.34

Weight (kDa)

6.36

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	713
AciI	CCGC	3 cut(s)	414, 761, 792
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	3 cut(s)	294, 429, 440
AfiI	CCNNNNNNNGG	2 cut(s)	46, 773
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	2 cut(s)	494, 596
AjnI	CCWGG	6 cut(s)	133, 322, 652, 816, 874, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AleI	CACNNNNGTG	1 cut(s)	47
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	5 cut(s)	63, 155, 345, 580, 703
AluI	AGCT	5 cut(s)	63, 155, 345, 580, 703
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	68, 71, 74
ApoI	RAATTY	3 cut(s)	294, 429, 440
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	539
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	763
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbsI	GAAGAC	3 cut(s)	121, 531, 715
BbvI	GCAGC	3 cut(s)	55, 58, 61
BciT130I	CCWGG	6 cut(s)	135, 324, 654, 818, 876, 908
BcnI	CCSGG	1 cut(s)	456
BfaI	CTAG	3 cut(s)	78, 750, 934
BfmI	CTRYAG	2 cut(s)	390, 632
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	69, 72, 75
BlsI	GCNGC	3 cut(s)	70, 73, 76
Bme1390I	CCNGG	7 cut(s)	135, 324, 456, 654, 818, 876, 908
BmiI	GGNNCC	5 cut(s)	625, 765, 836, 880, 927
BmrFI	CCNGG	7 cut(s)	135, 324, 456, 654, 818, 876, 908
BoxI	GACNNNNGTC	1 cut(s)	611
BpiI	GAAGAC	3 cut(s)	121, 531, 715
BpuMI	CCSGG	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	398
BsaJI	CCNNGG	5 cut(s)	133, 455, 546, 906, 907
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 773
Bse1I	ACTGG	2 cut(s)	51, 122
BseBI	CCWGG	6 cut(s)	135, 324, 654, 818, 876, 908
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	5 cut(s)	133, 455, 546, 906, 907
BseGI	GGATG	2 cut(s)	410, 847
BseLI	CCNNNNNNNGG	2 cut(s)	46, 773
BseMII	CTCAG	2 cut(s)	172, 195
BseNI	ACTGG	2 cut(s)	51, 122
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	55, 58, 61
BseYI	CCCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	713
Bsh1285I	CGRYCG	1 cut(s)	792
BshNI	GGYRCC	1 cut(s)	763
BshVI	ATCGAT	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	455, 887
BslI	CCNNNNNNNGG	2 cut(s)	46, 773
Bsp143I	GATC	2 cut(s)	6, 399
BspACI	CCGC	3 cut(s)	414, 761, 792
BspCNI	CTCAG	2 cut(s)	171, 194
BspDI	ATCGAT	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	5 cut(s)	625, 765, 836, 880, 927
BspMAI	CTGCAG	2 cut(s)	394, 636
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	51, 122
BssECI	CCNNGG	5 cut(s)	133, 455, 546, 906, 907
BssMI	GATC	2 cut(s)	6, 399
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	6 cut(s)	135, 324, 654, 818, 876, 908
Bst4CI	ACNGT	4 cut(s)	224, 475, 646, 883
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	3 cut(s)	158, 181, 515
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	410, 847
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	2 cut(s)	9, 402
BstMBI	GATC	2 cut(s)	6, 399
BstMCI	CGRYCG	1 cut(s)	792
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstNI	CCWGG	6 cut(s)	135, 324, 654, 818, 876, 908
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSCI	CCNGG	7 cut(s)	133, 322, 454, 652, 816, 874, 906
BstSFI	CTRYAG	2 cut(s)	390, 632
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	55, 58, 61
BstV2I	GAAGAC	3 cut(s)	121, 531, 715
BstX2I	RGATCY	1 cut(s)	6
BstXI	CCANNNNNNTGG	2 cut(s)	547, 740
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	410, 847
BtsIMutI	CAGTG	3 cut(s)	44, 166, 471
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	534
CfoI	GCGC	1 cut(s)	539
ClaI	ATCGAT	1 cut(s)	398
CviAII	CATG	3 cut(s)	334, 571, 831
DdeI	CTNAG	3 cut(s)	158, 181, 515
DpnI	GATC	2 cut(s)	8, 401
DpnII	GATC	2 cut(s)	6, 399
EciI	GGCGGA	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	546
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoRII	CCWGG	6 cut(s)	133, 322, 652, 816, 874, 906
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	3 cut(s)	337, 574, 834
FatI	CATG	3 cut(s)	333, 570, 830
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	69, 72, 75
FokI	GGATG	2 cut(s)	397, 834
Fsp4HI	GCNGC	3 cut(s)	69, 72, 75
FspBI	CTAG	3 cut(s)	78, 750, 934
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	3 cut(s)	69, 72, 75
GsaI	CCCAGC	1 cut(s)	584
HapII	CCGG	2 cut(s)	455, 887
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	337, 574, 834
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	4 cut(s)	179, 395, 551, 844
HpaII	CCGG	2 cut(s)	455, 887
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	4 cut(s)	164, 250, 562, 670
Hpy188III	TCNNGA	3 cut(s)	482, 494, 604
Hpy8I	GTNNAC	4 cut(s)	164, 250, 562, 670
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	304, 415, 668
HpyCH4III	ACNGT	4 cut(s)	224, 475, 646, 883
HpyCH4IV	ACGT	2 cut(s)	591, 666
HpyCH4V	TGCA	4 cut(s)	392, 634, 772, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	3 cut(s)	158, 181, 515
HpySE526I	ACGT	2 cut(s)	591, 666
Hsp92II	CATG	3 cut(s)	337, 574, 834
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	6, 399
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	3 cut(s)	55, 58, 61
MaeI	CTAG	3 cut(s)	78, 750, 934
MaeII	ACGT	2 cut(s)	591, 666
MaeIII	GTNAC	2 cut(s)	209, 695
MalI	GATC	2 cut(s)	8, 401
MboI	GATC	2 cut(s)	6, 399
MboII	GAAGA	7 cut(s)	121, 292, 536, 597, 673, 715, 893
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	6 cut(s)	24, 294, 429, 440, 477, 682
MluI	ACGCGT	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	173, 560
MmeI	TCCRAC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	870
MslI	CAYNNNNRTG	4 cut(s)	47, 143, 332, 829
MspI	CCGG	2 cut(s)	455, 887
MspR9I	CCNGG	7 cut(s)	135, 324, 456, 654, 818, 876, 908
MvaI	CCWGG	6 cut(s)	135, 324, 654, 818, 876, 908
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	2 cut(s)	6, 399
NlaIII	CATG	3 cut(s)	337, 574, 834
NlaIV	GGNNCC	5 cut(s)	625, 765, 836, 880, 927
NmuCI	GTSAC	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	47
PasI	CCCWGGG	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	395, 844
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	70, 73, 76
PleI	GAGTC	2 cut(s)	173, 559
PpsI	GAGTC	2 cut(s)	173, 559
PshAI	GACNNNNGTC	1 cut(s)	611
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	6 cut(s)	133, 322, 652, 816, 874, 906
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	6 cut(s)	133, 322, 652, 816, 874, 906
PspN4I	GGNNCC	5 cut(s)	625, 765, 836, 880, 927
PstI	CTGCAG	2 cut(s)	394, 636
PstNI	CAGNNNCTG	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	182
RseI	CAYNNNNRTG	4 cut(s)	47, 143, 332, 829
SaqAI	TTAA	1 cut(s)	870
SatI	GCNGC	3 cut(s)	69, 72, 75
Sau3AI	GATC	2 cut(s)	6, 399
SchI	GAGTC	2 cut(s)	173, 560
ScrFI	CCNGG	7 cut(s)	135, 324, 456, 654, 818, 876, 908
SfcI	CTRYAG	2 cut(s)	390, 632
SmiMI	CAYNNNNRTG	4 cut(s)	47, 143, 332, 829
Sse9I	AATT	6 cut(s)	24, 294, 429, 440, 477, 682
SsiI	CCGC	3 cut(s)	414, 761, 792
SspMI	CTAG	3 cut(s)	78, 750, 934
StyD4I	CCNGG	7 cut(s)	133, 322, 454, 652, 816, 874, 906
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	4 cut(s)	224, 475, 646, 883
TaiI	ACGT	2 cut(s)	594, 669
TaqI	TCGA	5 cut(s)	186, 228, 398, 605, 615
TasI	AATT	6 cut(s)	24, 294, 429, 440, 477, 682
TfiI	GAWTC	2 cut(s)	395, 844
Tru1I	TTAA	1 cut(s)	870
Tru9I	TTAA	1 cut(s)	870
TscAI	CASTG	3 cut(s)	51, 166, 478
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	68, 71, 74
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	350, 464, 676
TspGWI	ACGGA	2 cut(s)	235, 798
TspRI	CASTG	3 cut(s)	51, 166, 478
Tth111I	GACNNNGTC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	3 cut(s)	294, 429, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	3 cut(s)	78, 750, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.