Rw1G023250

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000559
Physical Location & Seq
Reverse (-)
48987420 .. 48989324
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023250.1

Sequence Viewer

Length: 402 bp
ATGGCATGCACAGAGTACATGTCAAGAGAAGGTGAAAGGAGTTATGCGCGGGTTGGAAAGGATGCTGTAAATATTATACCACAAGCATGCTATCGTGTCGGTACAGTCTATGCTGCCTCTAAAGAAGAAATCAAAGTGGAGCCAGGTTTGACTACATACTTCCAAGGAAAAGATCTTCAGCATTTGGGAAAAACGGTGACAATGCGATTCTTGAAACCCATGAGTAACAAGGTAGCTCTTTTGCCTCGTCAAGTTGCAAAGTCCATACCCTTTTCAAGCAGCAAGTTGCCAGAAATTCTAACATACTTTGGAGTGAAACCCAAGTCACCGGTTGCAGAAATAATGAAAAGCACAATCAAAGAGTGCGAGGCACCGGCCATTAAAGGCGAAGACAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

9.34

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 53 - 133 4.7e-20 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 3 cut(s) 17, 103, 398
AflIII ACRYGT 1 cut(s) 18
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 2 cut(s) 214, 276
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 113, 279
ApoI RAATTY 1 cut(s) 294
AsiGI ACCGGT 1 cut(s) 328
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 3 cut(s) 44, 208, 318
BanI GGYRCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 100, 291
BciT130I CCWGG 1 cut(s) 144
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 114, 280
BlsI GCNGC 2 cut(s) 115, 281
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 141, 372
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 328
Bse118I RCCGGY 2 cut(s) 328, 373
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 100, 291
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 370
BshTI ACCGGT 1 cut(s) 328
BsiSI CCGG 2 cut(s) 329, 374
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 49
BspANI GGCC 1 cut(s) 377
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 141, 372
BspT107I GGYRCC 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 328, 373
BssAI RCCGGY 2 cut(s) 328, 373
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 106, 196
BstC8I GCNNGC 2 cut(s) 7, 88
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 3 cut(s) 9, 22, 90
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 100, 291
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 7, 88
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 2 cut(s) 328, 373
Csp6I GTAC 3 cut(s) 16, 102, 397
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 4 cut(s) 6, 19, 87, 220
CviJI RGCY 3 cut(s) 142, 236, 377
CviKI_1 RGCY 3 cut(s) 142, 236, 377
CviQI GTAC 3 cut(s) 16, 102, 397
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 9, 22, 90, 223
FatI CATG 4 cut(s) 5, 18, 86, 219
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 114, 280
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 114, 280
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 114, 280
HaeIII GGCC 1 cut(s) 377
HapII CCGG 2 cut(s) 329, 374
HhaI GCGC 1 cut(s) 49
Hin1II CATG 4 cut(s) 9, 22, 90, 223
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 207
HpaII CCGG 2 cut(s) 329, 374
HphI GGTGA 3 cut(s) 44, 208, 318
Hpy188III TCNNGA 2 cut(s) 24, 211
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 2 cut(s) 106, 196
HpyCH4V TGCA 3 cut(s) 9, 257, 335
Hsp92II CATG 4 cut(s) 9, 22, 90, 223
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 129, 156, 303, 342, 387
Lsp1109I GCAGC 2 cut(s) 100, 291
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 3 cut(s) 196, 224, 324
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 137, 167, 401
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 3 cut(s) 127, 255, 361
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 2 cut(s) 329, 374
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 49
NdeII GATC 1 cut(s) 172
NlaIII CATG 4 cut(s) 9, 22, 90, 223
NlaIV GGNNCC 2 cut(s) 141, 372
NmuCI GTSAC 2 cut(s) 196, 324
NspI RCATGY 3 cut(s) 9, 22, 90
PaeI GCATGC 2 cut(s) 9, 90
PciI ACATGT 1 cut(s) 18
PfeI GAWTC 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 2 cut(s) 115, 281
PscI ACATGT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 141, 372
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 3 cut(s) 17, 103, 398
RsaNI GTAC 3 cut(s) 16, 102, 397
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 114, 280
Sau3AI GATC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 34, 148, 234, 238
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 85
SphI GCATGC 2 cut(s) 9, 90
Sse9I AATT 1 cut(s) 294
SsiI CCGC 1 cut(s) 49
SspI AATATT 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 106, 196
TasI AATT 1 cut(s) 294
TatI WGTACW 2 cut(s) 15, 396
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseFI GTSAC 2 cut(s) 196, 324
TseI GCWGC 2 cut(s) 113, 279
Tsp45I GTSAC 2 cut(s) 196, 324
TspDTI ATGAA 1 cut(s) 359
XapI RAATTY 1 cut(s) 294
XceI RCATGY 3 cut(s) 9, 22, 90
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.