Rw5G031920

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000559
Physical Location & Seq
Reverse (-)
53406477 .. 53407988
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031920.1

Sequence Viewer

Length: 960 bp
ATGGAGTACTTTCGCCTCGTTTCCGTCTGCGCTTTTCTCTATGTCGCATTAGCACTGTTGGGAAGAAGCTATGCCTCTAATGATGTATCATGGGGTTCTTACTGGCAGTCAGCTTTCCCAAAAACTGCGATACCCAAAACCCTACAAGAACTTCTACATCCGGACAACTGGATCGAAGGGAAAAGTAGATACACTGGGTTCAGCAAGGACGATCTAAACTTCAACACCTTGCTAGTTTCCGGATCTGCATTTCCAACTATTGGTAAAGATAGCTATGCCGAGGCCGCCTCCGGAAAAATCCAAGTGGAGCCAGATGTGACTACTTTCTTTTTAGAAAAGGATCTGCGACTGGGGAAGAAGATGACCCTGCACTTCCCCAAAACCACAGTTGCCGCAGAGATCTTGCCTCGTAAAGTCGCCAAGTCCATACCCTTTTCGACGAGCAAGCTGCCGCAGATTCTCAACCACTTTGCGGTGAAACCCAACTCCGTGGAAGCAGAAGTGATCAAACAGACGATCGAAGACTGCGAGGCGCCGAGCATCAAAGGGGAAGACAAGTACTGCGCCACGTCGTTGGAATCCTTGGTCGATTTTACCGTTTCGAAGCTCGGTAAATACGTGCAGGTGTATTCCACAGAGGTCGCAAACGAAAACAAACAGGAATATAAGATTGGAAAAGGAGCTGTGCAGCGAATTGGAGACAGGTCAGTGGTTTGTCACAAGCAGAAGTACGTGTATGCGGTTTTTTATTGCCATGAAATTCACTCAACTAGGGCTTACGTGGTTCCTTTGGTGGGTGCTGATGGAACTAAAGCTGAAGCGGTAGCTGTTTGCCACACTGATACAAGAACATGGAACAATAAGCATTTTGCTTTCCAGGCCCTCAAAATAAAGCCGGGAACACTTCCTATTTGTCACTTCTTGCCTAGTGGAAACCTTGTGTGGGTTCCAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

319

Amino Acids

35.57

Weight (kDa)

8.88

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 109 - 317 9.9e-85 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 532
AccB7I CCANNNNNTGG 1 cut(s) 260
AccIII TCCGGA 3 cut(s) 160, 239, 290
AciI CCGC 6 cut(s) 285, 393, 452, 473, 740, 821
AclWI GGATC 3 cut(s) 179, 250, 348
AcsI RAATTY 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 533
AfaI GTAC 3 cut(s) 8, 560, 731
AfiI CCNNNNNNNGG 4 cut(s) 260, 472, 794, 943
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 1 cut(s) 223
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 1 cut(s) 876
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 8 cut(s) 69, 113, 273, 448, 607, 683, 815, 827
AluI AGCT 8 cut(s) 69, 113, 273, 448, 607, 683, 815, 827
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 3 cut(s) 179, 250, 348
Aor13HI TCCGGA 3 cut(s) 160, 239, 290
AoxI GGCC 2 cut(s) 282, 879
ApeKI GCWGC 2 cut(s) 448, 688
ApoI RAATTY 1 cut(s) 759
AspLEI GCGC 3 cut(s) 32, 535, 566
AspS9I GGNCC 1 cut(s) 880
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 532
BbsI GAAGAC 2 cut(s) 528, 558
BbvI GCAGC 2 cut(s) 435, 700
BccI CCATC 1 cut(s) 797
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 878
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 3 cut(s) 233, 771, 927
BfoI RGCGCY 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 399
BisI GCNGC 5 cut(s) 285, 393, 449, 452, 689
BlsI GCNGC 5 cut(s) 286, 394, 450, 453, 690
BmcAI AGTACT 2 cut(s) 8, 560
Bme1390I CCNGG 2 cut(s) 878, 897
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 880
BmiI GGNNCC 4 cut(s) 309, 534, 786, 948
BmrFI CCNGG 2 cut(s) 878, 897
BmrI ACTGGG 2 cut(s) 204, 359
BmsI GCATC 1 cut(s) 549
BmuI ACTGGG 2 cut(s) 204, 359
BpiI GAAGAC 2 cut(s) 528, 558
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 897
BsaAI YACGTR 3 cut(s) 619, 733, 781
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 3 cut(s) 279, 489, 582
BsaWI WCCGGW 3 cut(s) 160, 239, 290
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 472, 794, 943
Bse1I ACTGG 4 cut(s) 107, 173, 199, 354
BseAI TCCGGA 3 cut(s) 160, 239, 290
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 3 cut(s) 279, 489, 582
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 4 cut(s) 260, 472, 794, 943
BseNI ACTGG 4 cut(s) 107, 173, 199, 354
BseXI GCAGC 2 cut(s) 435, 700
BsgI GTGCAG 3 cut(s) 353, 641, 707
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 284, 881
BshNI GGYRCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 519
BsiSI CCGG 4 cut(s) 161, 240, 291, 896
BslI CCNNNNNNNGG 4 cut(s) 260, 472, 794, 943
BsmAI GTCTC 1 cut(s) 693
BsnI GGCC 2 cut(s) 284, 881
Bsp119I TTCGAA 1 cut(s) 602
Bsp13I TCCGGA 3 cut(s) 160, 239, 290
Bsp143I GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BspACI CCGC 6 cut(s) 285, 393, 452, 473, 740, 821
BspANI GGCC 2 cut(s) 284, 881
BspEI TCCGGA 3 cut(s) 160, 239, 290
BspLI GGNNCC 4 cut(s) 309, 534, 786, 948
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 179, 250, 348
BspT104I TTCGAA 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 532
BsrI ACTGG 4 cut(s) 107, 173, 199, 354
BssECI CCNNGG 3 cut(s) 279, 489, 582
BssMI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 3 cut(s) 57, 388, 598
BstACI GRCGYC 1 cut(s) 533
BstBAI YACGTR 3 cut(s) 619, 733, 781
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 446
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 3 cut(s) 32, 535, 566
BstKTI GATC 7 cut(s) 174, 214, 245, 343, 402, 507, 519
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 2 cut(s) 284, 878
BstNI CCWGG 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 876, 895
BstV1I GCAGC 2 cut(s) 435, 700
BstV2I GAAGAC 2 cut(s) 528, 558
BstX2I RGATCY 3 cut(s) 242, 340, 399
BstXI CCANNNNNNTGG 2 cut(s) 490, 574
BstYI RGATCY 3 cut(s) 242, 340, 399
BsuRI GGCC 2 cut(s) 284, 881
BtgI CCRYGG 1 cut(s) 489
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 4 cut(s) 53, 192, 714, 837
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 446
CfoI GCGC 3 cut(s) 32, 535, 566
Cfr13I GGNCC 1 cut(s) 880
Csp6I GTAC 3 cut(s) 7, 559, 730
CviAII CATG 3 cut(s) 90, 755, 852
CviQI GTAC 3 cut(s) 7, 559, 730
DinI GGCGCC 1 cut(s) 534
DpnI GATC 7 cut(s) 173, 213, 244, 342, 401, 506, 518
DpnII GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
Eco130I CCWWGG 1 cut(s) 582
Eco57I CTGAAG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 1 cut(s) 582
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 3 cut(s) 93, 758, 855
FaiI YATR 9 cut(s) 42, 72, 91, 276, 428, 666, 738, 756, 853
FatI CATG 3 cut(s) 89, 754, 851
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 285, 393, 449, 452, 689
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 285, 393, 449, 452, 689
FspBI CTAG 3 cut(s) 233, 771, 927
GlaI GCGC 3 cut(s) 31, 534, 565
GluI GCNGC 5 cut(s) 285, 393, 449, 452, 689
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 284, 881
HapII CCGG 4 cut(s) 161, 240, 291, 896
HhaI GCGC 3 cut(s) 32, 535, 566
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 3 cut(s) 93, 758, 855
Hin6I GCGC 3 cut(s) 30, 533, 564
HinP1I GCGC 3 cut(s) 30, 533, 564
HinfI GANTC 2 cut(s) 457, 578
HpaII CCGG 4 cut(s) 161, 240, 291, 896
HphI GGTGA 1 cut(s) 487
Hpy188III TCNNGA 3 cut(s) 161, 240, 291
Hpy99I CGWCG 2 cut(s) 442, 574
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 57, 388, 598
HpyCH4IV ACGT 4 cut(s) 569, 618, 732, 780
HpyCH4V TGCA 4 cut(s) 248, 370, 622, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 878
HpySE526I ACGT 4 cut(s) 569, 618, 732, 780
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 3 cut(s) 93, 758, 855
HspAI GCGC 3 cut(s) 30, 533, 564
KasI GGCGCC 1 cut(s) 532
Kpn2I TCCGGA 3 cut(s) 160, 239, 290
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
LmnI GCTCC 2 cut(s) 307, 680
Lsp1109I GCAGC 2 cut(s) 435, 700
LweI GCATC 1 cut(s) 549
MaeI CTAG 3 cut(s) 233, 771, 927
MaeII ACGT 4 cut(s) 569, 618, 732, 780
MaeIII GTNAC 3 cut(s) 316, 716, 914
MalI GATC 7 cut(s) 173, 213, 244, 342, 401, 506, 518
MboI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
MboII GAAGA 5 cut(s) 75, 367, 370, 533, 563
MflI RGATCY 3 cut(s) 242, 340, 399
MluCI AATT 2 cut(s) 693, 759
Mly113I GGCGCC 1 cut(s) 533
MmeI TCCRAC 2 cut(s) 278, 555
MnlI CCTC 8 cut(s) 26, 85, 274, 298, 417, 523, 631, 893
MroI TCCGGA 3 cut(s) 160, 239, 290
MspI CCGG 4 cut(s) 161, 240, 291, 896
MspR9I CCNGG 2 cut(s) 878, 897
MvaI CCWGG 1 cut(s) 878
MwoI GCNNNNNNNGC 2 cut(s) 284, 878
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 897
NdeII GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
NlaIII CATG 3 cut(s) 93, 758, 855
NlaIV GGNNCC 4 cut(s) 309, 534, 786, 948
NmeAIII GCCGAG 2 cut(s) 304, 561
NmuCI GTSAC 3 cut(s) 316, 716, 914
NspV TTCGAA 1 cut(s) 602
PaqCI CACCTGC 1 cut(s) 613
PcsI WCGNNNNNNNCGW 3 cut(s) 525, 594, 615
PfeI GAWTC 2 cut(s) 457, 578
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 5 cut(s) 286, 394, 450, 453, 690
Ple19I CGATCG 1 cut(s) 519
PluTI GGCGCC 1 cut(s) 536
Ppu21I YACGTR 3 cut(s) 619, 733, 781
Psp6I CCWGG 1 cut(s) 876
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 4 cut(s) 309, 534, 786, 948
PspPI GGNCC 1 cut(s) 880
PsuI RGATCY 3 cut(s) 242, 340, 399
PvuI CGATCG 1 cut(s) 519
RsaI GTAC 3 cut(s) 8, 560, 731
RsaNI GTAC 3 cut(s) 7, 559, 730
SatI GCNGC 5 cut(s) 285, 393, 449, 452, 689
Sau3AI GATC 7 cut(s) 171, 211, 242, 340, 399, 504, 516
Sau96I GGNCC 1 cut(s) 880
ScaI AGTACT 2 cut(s) 8, 560
ScrFI CCNGG 2 cut(s) 878, 897
SfaNI GCATC 1 cut(s) 549
SfoI GGCGCC 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 602
Sse9I AATT 2 cut(s) 693, 759
SsiI CCGC 6 cut(s) 285, 393, 452, 473, 740, 821
SspDI GGCGCC 1 cut(s) 532
SspMI CTAG 3 cut(s) 233, 771, 927
StyD4I CCNGG 2 cut(s) 876, 895
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 3 cut(s) 57, 388, 598
TaiI ACGT 4 cut(s) 572, 621, 735, 783
TaqI TCGA 5 cut(s) 174, 437, 519, 588, 602
TasI AATT 2 cut(s) 693, 759
TatI WGTACW 2 cut(s) 6, 558
TauI GCSGC 3 cut(s) 287, 395, 454
TfiI GAWTC 2 cut(s) 457, 578
TscAI CASTG 4 cut(s) 60, 199, 714, 844
TseFI GTSAC 3 cut(s) 316, 716, 914
TseI GCWGC 2 cut(s) 448, 688
Tsp45I GTSAC 3 cut(s) 316, 716, 914
TspDTI ATGAA 1 cut(s) 771
TspGWI ACGGA 2 cut(s) 13, 478
TspRI CASTG 4 cut(s) 60, 199, 714, 844
Van91I CCANNNNNTGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 759
XspI CTAG 3 cut(s) 233, 771, 927
ZrmI AGTACT 2 cut(s) 8, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.