Rw7G036720

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000559
Physical Location & Seq
Forward (+)
55584914 .. 55587588
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036720.1

Sequence Viewer

Length: 942 bp
ATGGATCAGTTTCGTCTTCTTTGTCTGTTTTCAATTTTCCATGTGGCATCAGTAGTGGTGGGAATTGGTTATGCTAACAAGGTCGATGACGACAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCATTGCCTTCCAAAGCTGTACAAAAACTTCTAAACCCTGCAGGACAAAGAAGTTACACAGGGAATGGAAAGGATGATGTAGATCGTACACGATTGACTATCGGGAATTCTTTTCCTAACTCTGAAGAAGTCAACGTGGAGCCAGGTTTAACTACATTCTTCCAAGGAAAAGATCTTCAGGATTTGGGAAAAACTGTGACATTGCGATTCTTGAAACCCACAAGTAACAAGGCAACTCTTTTGCCTCGTCAACTTGCAAAGTCCATACCCTTTTCTAGTAGCAAGTTGCCAGAAATTCTAACCTACTTTGGAGTGAAACCCAAATCAGCTGTTGCAGAAATAATGAAAAGGACAATCGAAGAGTGTGAGGCACCGGCCATTAAAGGCGAAGATAAGTACTGCGCAACATCGCTAGAATCCTTGATTGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACTGAGGCCGAAAATGAAAAGAAACAAGACTATAGCATTGAGATTACTGGAGTCCAAAGTATTGGAGACAGGTCGATTGTGTGCCATAAGGAGAACTATGTTTATGGTGTGTTTTACTGCCACAAATTCTATGGCACAACAACAAGAGCTTACATGGTTCCATTGGTAGGTGCTGATGGGGTTACAACAGCCAAAGCAGTAGCTATTTGCCATACTGATACCAGTAGCTGGAACCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCCCAGTCTGTCATTTTCTGTCCACTACAAGTCTTTTGTGGGCTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

313

Amino Acids

34.69

Weight (kDa)

8.79

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 98 - 311 2.6e-76 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 834
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 4 cut(s) 115, 241, 429, 731
AcuI CTGAAG 2 cut(s) 279, 296
AfaI GTAC 4 cut(s) 156, 223, 533, 590
AfiI CCNNNNNNNGG 2 cut(s) 773, 834
AgsI TTSAA 4 cut(s) 33, 349, 576, 860
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 98, 277, 877
AluBI AGCT 7 cut(s) 122, 152, 464, 580, 755, 809, 834
AluI AGCT 7 cut(s) 122, 152, 464, 580, 755, 809, 834
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 834
AoxI GGCC 3 cut(s) 510, 612, 852
ApoI RAATTY 4 cut(s) 115, 241, 429, 731
AspLEI GCGC 1 cut(s) 539
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 934
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 8
BccI CCATC 1 cut(s) 776
BciT130I CCWGG 3 cut(s) 100, 279, 879
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 2 cut(s) 411, 548
BfmI CTRYAG 2 cut(s) 174, 637
BglII AGATCT 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 3 cut(s) 100, 279, 879
BmeRI GACNNNNNGTC 1 cut(s) 94
BmiI GGNNCC 5 cut(s) 276, 507, 765, 839, 933
BmrFI CCNGG 3 cut(s) 100, 279, 879
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 773, 834
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 4 cut(s) 116, 658, 828, 893
Bse3DI GCAATG 2 cut(s) 137, 335
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 3 cut(s) 100, 279, 879
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 108, 214
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 773, 834
BseMI GCAATG 2 cut(s) 137, 335
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 4 cut(s) 116, 658, 828, 893
BshFI GGCC 3 cut(s) 512, 614, 854
BshNI GGYRCC 1 cut(s) 505
BsiSI CCGG 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 773, 834
BsmAI GTCTC 1 cut(s) 666
BsnI GGCC 3 cut(s) 512, 614, 854
Bsp1286I GDGCHC 1 cut(s) 934
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 4, 217, 307
BspANI GGCC 3 cut(s) 512, 614, 854
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 5 cut(s) 276, 507, 765, 839, 933
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 505
BsrDI GCAATG 2 cut(s) 137, 335
BsrFI RCCGGY 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 4 cut(s) 116, 658, 828, 893
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 3 cut(s) 4, 217, 307
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 3 cut(s) 100, 279, 879
Bst4CI ACNGT 2 cut(s) 331, 571
Bst6I CTCTTC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 609, 843
BstF5I GGATG 2 cut(s) 108, 214
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 3 cut(s) 7, 220, 310
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 3 cut(s) 4, 217, 307
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 3 cut(s) 100, 279, 879
BstSCI CCNGG 3 cut(s) 98, 277, 877
BstSFI CTRYAG 2 cut(s) 174, 637
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 3 cut(s) 512, 614, 854
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 2 cut(s) 108, 214
CaiI CAGNNNCTG 1 cut(s) 834
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 508
Csp6I GTAC 4 cut(s) 155, 222, 532, 589
CviAII CATG 2 cut(s) 41, 760
CviQI GTAC 4 cut(s) 155, 222, 532, 589
DdeI CTNAG 2 cut(s) 609, 843
DpnI GATC 3 cut(s) 6, 219, 309
DpnII GATC 3 cut(s) 4, 217, 307
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 489
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 934
Eco57I CTGAAG 2 cut(s) 279, 296
EcoRI GAATTC 2 cut(s) 115, 241
EcoRII CCWGG 3 cut(s) 98, 277, 877
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 44, 763
FatI CATG 2 cut(s) 40, 759
FokI GGATG 2 cut(s) 115, 221
FriOI GRGCYC 1 cut(s) 934
FspBI CTAG 2 cut(s) 411, 548
FspI TGCGCA 1 cut(s) 538
GlaI GCGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 3 cut(s) 512, 614, 854
HapII CCGG 1 cut(s) 509
HhaI GCGC 1 cut(s) 539
Hin1II CATG 2 cut(s) 44, 763
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 2 cut(s) 268, 386
HindII GTYRAC 2 cut(s) 268, 386
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 342, 551, 657
HpaII CCGG 1 cut(s) 509
Hpy166II GTNNAC 4 cut(s) 224, 268, 386, 912
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 238, 314, 346
Hpy8I GTNNAC 4 cut(s) 224, 268, 386, 912
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 331, 571
HpyCH4IV ACGT 2 cut(s) 270, 591
HpyCH4V TGCA 4 cut(s) 176, 392, 470, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 2 cut(s) 609, 843
HpySE526I ACGT 2 cut(s) 270, 591
Hsp92II CATG 2 cut(s) 44, 763
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 3 cut(s) 4, 217, 307
LmnI GCTCC 2 cut(s) 274, 937
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 411, 548
MaeII ACGT 2 cut(s) 270, 591
MaeIII GTNAC 4 cut(s) 188, 331, 359, 787
MalI GATC 3 cut(s) 6, 219, 309
MboI GATC 3 cut(s) 4, 217, 307
MboII GAAGA 6 cut(s) 8, 272, 286, 302, 506, 536
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 6 cut(s) 33, 63, 115, 241, 429, 731
MlyI GAGTC 1 cut(s) 666
MnlI CCTC 4 cut(s) 390, 496, 604, 875
MseI TTAA 2 cut(s) 284, 516
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 3 cut(s) 100, 279, 879
MvaI CCWGG 3 cut(s) 100, 279, 879
MwoI GCNNNNNNNGC 1 cut(s) 611
NdeII GATC 3 cut(s) 4, 217, 307
NlaIII CATG 2 cut(s) 44, 763
NlaIV GGNNCC 5 cut(s) 276, 507, 765, 839, 933
NmuCI GTSAC 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 538
PfeI GAWTC 2 cut(s) 342, 551
PflMI CCANNNNNTGG 1 cut(s) 834
PfoI TCCNGGA 1 cut(s) 98
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 98, 277, 877
PspGI CCWGG 3 cut(s) 98, 277, 877
PspN4I GGNNCC 5 cut(s) 276, 507, 765, 839, 933
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 156, 223, 533, 590
RsaNI GTAC 4 cut(s) 155, 222, 532, 589
SaqAI TTAA 2 cut(s) 284, 516
Sau3AI GATC 3 cut(s) 4, 217, 307
SbfI CCTGCAGG 1 cut(s) 178
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 1 cut(s) 666
ScrFI CCNGG 3 cut(s) 100, 279, 879
SdaI CCTGCAGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 2 cut(s) 174, 637
Sse8387I CCTGCAGG 1 cut(s) 178
Sse9I AATT 6 cut(s) 33, 63, 115, 241, 429, 731
SspMI CTAG 2 cut(s) 411, 548
StyD4I CCNGG 3 cut(s) 98, 277, 877
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 331, 571
TaiI ACGT 2 cut(s) 273, 594
TaqI TCGA 3 cut(s) 84, 492, 680
TasI AATT 6 cut(s) 33, 63, 115, 241, 429, 731
TatI WGTACW 2 cut(s) 154, 531
TfiI GAWTC 2 cut(s) 342, 551
Tru1I TTAA 2 cut(s) 284, 516
Tru9I TTAA 2 cut(s) 284, 516
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 494, 636
Van91I CCANNNNNTGG 1 cut(s) 834
XapI RAATTY 4 cut(s) 115, 241, 429, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XspI CTAG 2 cut(s) 411, 548
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.