Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Reverse (-)

49356467 .. 49357923

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTAGCCCCTGATCCTCATACCCTGGCCTCTGTTTTTGGCATGCTAGGTACCCTCGTCTCCTTCCTCGTCTTGCTAGCCCCACTACCGACATTTTATAGGATTTACAAGAGAAAATCAGCAGACGGGTTCCAATCTTTACCATATTCAGTGGCTTTGTTTAGTGCCATGTTAATGTTCTACTATGCTTACATCAAAGAAAATGCTTATTTGCTGTTGGGAATCAATTCCTTTGGCTCCATCATAGAAACTATATACCTTATAGTTTACATGATTTACGCACCATCAAATTCCAGGATTTTCACGGCAAAGCTGCTAGTCCTGTTTAACTTTTTGGCTTATGGGGTGATCGTAGGAGTTACATACCAAATCCCAAATCCTCTTCTGCGGCTTAAAGTCGTTGGATGGATAAATGTCGTCTTCTCTGTCTGTGTATTTGCTGCCCCTCTAAGTATTCTGAGACTGGTTATTAGAACAAAGAGTGTGGAATACATGTCATTCCCTCTATCGTTCTGCTTAACCATTTGTGCTGTCATGTGGTTCTTCTATGGCCTTTTGATCAAGGATTTATTTGTAGCGGCGCCAAATATCTTAGGGTTTACATTTGGGATGGCTCAGATGATTTTGTTCCTGGTTTACAAGAACACTAAGAGACGTCCCATCTTACCAGAATTCAAACTAAACGAGATGCCAAACAGAGTTGCTGCAGCAAATGATGAAATAATAGTAGCATGCGAAAGTACTACACAAACTGGGCTGAAAACAGGGGAAGGGGAGAATAAGACTAGTTGTGAAGCTGATGATGATCATGAGAATCAATCACAGACCACTGAGACCAGTACTGTTACTAATGATATTGAGACAAGTCCTGAATCAATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

294

Amino Acids

32.88

Weight (kDa)

6.16

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 96	1.2e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	1.4e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	658
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AciI	CCGC	2 cut(s)	388, 578
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	289, 671
AcyI	GRCGYC	2 cut(s)	581, 655
AfaI	GTAC	3 cut(s)	52, 742, 841
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	676
AhlI	ACTAGT	1 cut(s)	785
AjnI	CCWGG	3 cut(s)	24, 293, 630
AluBI	AGCT	2 cut(s)	313, 797
AluI	AGCT	2 cut(s)	313, 797
Alw26I	GTCTC	5 cut(s)	64, 454, 646, 827, 854
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	27, 550
ApeKI	GCWGC	4 cut(s)	313, 440, 704, 707
ApoI	RAATTY	2 cut(s)	289, 671
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 580
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	300, 427, 691, 719
BccI	CCATC	5 cut(s)	248, 292, 399, 604, 668
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	3 cut(s)	26, 295, 632
BclI	TGATCA	2 cut(s)	558, 805
BcoDI	GTCTC	5 cut(s)	64, 454, 646, 827, 854
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	4 cut(s)	47, 77, 317, 786
BfmI	CTRYAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	584
BisI	GCNGC	6 cut(s)	314, 389, 441, 579, 705, 708
BlsI	GCNGC	6 cut(s)	315, 390, 442, 580, 706, 709
BmcAI	AGTACT	2 cut(s)	742, 841
Bme1390I	CCNGG	3 cut(s)	26, 295, 632
BmiI	GGNNCC	4 cut(s)	52, 131, 238, 582
BmrFI	CCNGG	3 cut(s)	26, 295, 632
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	678
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	581, 655
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	24
Bse1I	ACTGG	3 cut(s)	468, 757, 837
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	26, 295, 632
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	410, 615
BseJI	GATNNNNATC	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	449, 629, 822
BseNI	ACTGG	3 cut(s)	468, 757, 837
BseXI	GCAGC	4 cut(s)	300, 427, 691, 719
BshFI	GGCC	2 cut(s)	29, 552
BshNI	GGYRCC	2 cut(s)	50, 580
BslFI	GGGAC	1 cut(s)	642
BsmAI	GTCTC	5 cut(s)	64, 454, 646, 827, 854
BsmBI	CGTCTC	2 cut(s)	64, 646
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	29, 552
Bso31I	GGTCTC	1 cut(s)	827
Bsp143I	GATC	4 cut(s)	13, 348, 558, 805
BspACI	CCGC	2 cut(s)	388, 578
BspANI	GGCC	2 cut(s)	29, 552
BspCNI	CTCAG	3 cut(s)	450, 628, 823
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	52, 131, 238, 582
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	50, 580
BspTNI	GGTCTC	1 cut(s)	827
BsrI	ACTGG	3 cut(s)	468, 757, 837
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	13, 348, 558, 805
BssNI	GRCGYC	2 cut(s)	581, 655
Bst2UI	CCWGG	3 cut(s)	26, 295, 632
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	2 cut(s)	581, 655
BstC8I	GCNNGC	3 cut(s)	44, 78, 733
BstDEI	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 831
BstF5I	GGATG	2 cut(s)	410, 615
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	16, 351, 561, 808
BstMAI	GTCTC	5 cut(s)	64, 454, 646, 827, 854
BstMBI	GATC	4 cut(s)	13, 348, 558, 805
BstNI	CCWGG	3 cut(s)	26, 295, 632
BstNSI	RCATGY	3 cut(s)	46, 496, 735
BstSCI	CCNGG	3 cut(s)	24, 293, 630
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	4 cut(s)	300, 427, 691, 719
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	29, 552
BtsCI	GGATG	2 cut(s)	410, 615
BtsIMutI	CAGTG	2 cut(s)	156, 828
Cac8I	GCNNGC	3 cut(s)	44, 78, 733
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	1 cut(s)	583
Csp6I	GTAC	3 cut(s)	51, 741, 840
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	7 cut(s)	43, 169, 271, 493, 535, 732, 809
CviQI	GTAC	3 cut(s)	51, 741, 840
DdeI	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 831
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	4 cut(s)	15, 350, 560, 807
DpnII	GATC	4 cut(s)	13, 348, 558, 805
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	24, 293, 630
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
Esp3I	CGTCTC	2 cut(s)	64, 646
FaeI	CATG	7 cut(s)	46, 172, 274, 496, 538, 735, 812
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	7 cut(s)	42, 168, 270, 492, 534, 731, 808
FbaI	TGATCA	2 cut(s)	558, 805
Fnu4HI	GCNGC	6 cut(s)	314, 389, 441, 579, 705, 708
FokI	GGATG	2 cut(s)	417, 622
Fsp4HI	GCNGC	6 cut(s)	314, 389, 441, 579, 705, 708
FspBI	CTAG	4 cut(s)	47, 77, 317, 786
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	6 cut(s)	314, 389, 441, 579, 705, 708
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	29, 552
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	2 cut(s)	581, 655
Hin1II	CATG	7 cut(s)	46, 172, 274, 496, 538, 735, 812
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	3 cut(s)	222, 814, 872
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	268, 600, 637
Hpy188I	TCNGA	2 cut(s)	459, 618
Hpy188III	TCNNGA	2 cut(s)	809, 869
Hpy8I	GTNNAC	3 cut(s)	268, 600, 637
HpyAV	CCTTC	2 cut(s)	73, 764
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	1 cut(s)	707
HpyF3I	CTNAG	6 cut(s)	449, 458, 592, 615, 648, 831
HpySE526I	ACGT	1 cut(s)	655
Hsp92I	GRCGYC	2 cut(s)	581, 655
Hsp92II	CATG	7 cut(s)	46, 172, 274, 496, 538, 735, 812
HspAI	GCGC	1 cut(s)	581
KasI	GGCGCC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	558, 805
Kzo9I	GATC	4 cut(s)	13, 348, 558, 805
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	4 cut(s)	300, 427, 691, 719
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	4 cut(s)	47, 77, 317, 786
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	2 cut(s)	358, 844
MalI	GATC	4 cut(s)	15, 350, 560, 807
MboI	GATC	4 cut(s)	13, 348, 558, 805
MboII	GAAGA	3 cut(s)	374, 412, 535
MfeI	CAATTG	1 cut(s)	876
MluCI	AATT	4 cut(s)	226, 289, 671, 876
Mly113I	GGCGCC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	27, 40, 65, 77, 390, 456, 513
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	4 cut(s)	173, 327, 393, 518
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	26, 295, 632
MunI	CAATTG	1 cut(s)	876
MvaI	CCWGG	3 cut(s)	26, 295, 632
NarI	GGCGCC	1 cut(s)	581
NdeII	GATC	4 cut(s)	13, 348, 558, 805
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	7 cut(s)	46, 172, 274, 496, 538, 735, 812
NlaIV	GGNNCC	4 cut(s)	52, 131, 238, 582
NspI	RCATGY	3 cut(s)	46, 496, 735
PaeI	GCATGC	2 cut(s)	46, 735
PagI	TCATGA	1 cut(s)	808
PciI	ACATGT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	222, 814, 872
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	315, 390, 442, 580, 706, 709
PluTI	GGCGCC	1 cut(s)	584
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	24, 293, 630
PspGI	CCWGG	3 cut(s)	24, 293, 630
PspN4I	GGNNCC	4 cut(s)	52, 131, 238, 582
PstI	CTGCAG	1 cut(s)	709
RsaI	GTAC	3 cut(s)	52, 742, 841
RsaNI	GTAC	3 cut(s)	51, 741, 840
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	173, 327, 393, 518
SatI	GCNGC	6 cut(s)	314, 389, 441, 579, 705, 708
Sau3AI	GATC	4 cut(s)	13, 348, 558, 805
ScaI	AGTACT	2 cut(s)	742, 841
ScrFI	CCNGG	3 cut(s)	26, 295, 632
SetI	ASST	5 cut(s)	52, 261, 315, 658, 799
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	1 cut(s)	705
SfoI	GGCGCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	785
SphI	GCATGC	2 cut(s)	46, 735
Sse9I	AATT	4 cut(s)	226, 289, 671, 876
SsiI	CCGC	2 cut(s)	388, 578
SspDI	GGCGCC	1 cut(s)	580
SspMI	CTAG	4 cut(s)	47, 77, 317, 786
StyD4I	CCNGG	3 cut(s)	24, 293, 630
TaaI	ACNGT	1 cut(s)	844
TaiI	ACGT	1 cut(s)	658
TasI	AATT	4 cut(s)	226, 289, 671, 876
TatI	WGTACW	2 cut(s)	740, 839
TauI	GCSGC	2 cut(s)	391, 581
TfiI	GAWTC	3 cut(s)	222, 814, 872
Tru1I	TTAA	4 cut(s)	173, 327, 393, 518
Tru9I	TTAA	4 cut(s)	173, 327, 393, 518
TscAI	CASTG	2 cut(s)	156, 835
TseI	GCWGC	4 cut(s)	313, 440, 704, 707
TspDTI	ATGAA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	156, 835
XapI	RAATTY	2 cut(s)	289, 671
XceI	RCATGY	3 cut(s)	46, 496, 735
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	4 cut(s)	47, 77, 317, 786
ZraI	GACGTC	1 cut(s)	656
ZrmI	AGTACT	2 cut(s)	742, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.