Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000559

Physical Location & Seq

Genomic Coordinates Reverse (-)

2093495 .. 2097173

Gene Structure 3679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1018200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCATTTCATCTCCCATTCTTCTTCTCTCTTCTCAATATGGCAGTGGTGGTGGCACTGGCAAGCCAAGATGCTCATCCACCGTTACCTCATGAACTCTACTGGAACTCGGTCTTGCCAAACACACAAATGCCAAAAGCTATCAGTCAACTTCTCCAACCTGACTTCATGATTAAAGAAGATATGAGAATCGCTGTCGAACTAGGGAAGGGTTCTTGTTTCGACCTCATTGCAGGAGAAGAAAACCCTAGACCTGCTGGAGGCACAAATGTCGATCTTGTTGGAAAAGATGGAACGAAACCTGCATATGTTGGAGTAGCACAAGAACGAGTCCCATTTCTTTACCGTTATCATGCACATGCCACTCATGAGAATCATCAACTCCATAAAGATGACAACCCACAGGCAACTCTATTCTTCTTGGACAAGGGCATGCGTCCTGGGACAACAATGAACTTGAACTTCACTAGAAATTCGAATACGGCGAATTTCCTACTGCGCAAAACAGCAGAGTTGATCCCCTTCTCGTCGAACGAATTACCTGAAATTTTCAACCAATTTTCAGTGAAATCGGAATCTGTGGAAGCCAATATAATTAAGCAAACTATTGAAGAGTGCGAAGCTCCAGGCATAAGAGGAGAGGAAAAATATTGTGCCACCTCGTTAGAATCAATGATTGATTTCACCACTTCGAAGCTCGGAAGAAACGTTCAGGCATTCTCGACGGAGGTGTTGGAGAAAGGAGGAACCATGTCCATAATTTCTGTAAAGAAGCTTGCAGGTCACGAAGCCGTTGTGTGCCATAAGCAGAACTATCCGTACGCAGTGTTTTACTGCCATGCAACAAAACCTACAAGAGCTTACGTGGTGCCCCTGAGAGGTTCTGATGGGGTGAAAGCTAAAGCAGTAGCAATCTGCCATGTGGACACATCAGCATGGGACCCACAGAATTTGGCCTTCCAAGTGCTCAAGGTTAAGCCCGGAACCATTCCCATCTGCCACTTCCTTCCTAGTGATCATGTTGTTTGGGTTCCAACCCCCAAATCTACATTAGTAGTTGAACCCATCAGTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BURP

Protein Analysis

360

Amino Acids

39.74

Weight (kDa)

6.53

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	138 - 345	1.3e-82	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25610
fragaria_vesca	FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica	MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica	Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis	pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis	RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata	RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora	Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii	Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa	Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha	Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana	Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	500
Acc36I	ACCTGC	3 cut(s)	262, 310, 770
AccB1I	GGYRCC	1 cut(s)	868
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	4 cut(s)	472, 487, 546, 949
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	2 cut(s)	260, 878
AgsI	TTSAA	4 cut(s)	460, 553, 611, 1061
AjnI	CCWGG	2 cut(s)	439, 625
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	6 cut(s)	140, 623, 697, 775, 860, 899
AluI	AGCT	6 cut(s)	140, 623, 697, 775, 860, 899
Alw21I	GWGCWC	1 cut(s)	969
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	1 cut(s)	954
ApoI	RAATTY	4 cut(s)	472, 487, 546, 949
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	940
AsuC2I	CCSGG	1 cut(s)	981
AsuHPI	GGTGA	2 cut(s)	676, 904
AsuII	TTCGAA	2 cut(s)	476, 692
AvaII	GGWCC	1 cut(s)	940
BaeGI	GKGCMC	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	868
Bbv12I	GWGCWC	1 cut(s)	969
BccI	CCATC	4 cut(s)	284, 881, 1001, 1073
BceAI	ACGGC	2 cut(s)	498, 776
BcgI	CGANNNNNNTGC	4 cut(s)	212, 246, 253, 287
BciT130I	CCWGG	2 cut(s)	441, 627
BclI	TGATCA	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	981
BfaI	CTAG	4 cut(s)	203, 249, 468, 1011
BfuAI	ACCTGC	3 cut(s)	262, 310, 770
Bme1390I	CCNGG	3 cut(s)	441, 627, 981
Bme18I	GGWCC	1 cut(s)	940
BmgT120I	GGNCC	1 cut(s)	940
BmiI	GGNNCC	6 cut(s)	748, 870, 941, 942, 985, 1032
BmrFI	CCNGG	3 cut(s)	441, 627, 981
BmsI	GCATC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	279, 609
Bpu14I	TTCGAA	2 cut(s)	476, 692
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	981
BsaAI	YACGTR	1 cut(s)	865
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 878
Bse1I	ACTGG	2 cut(s)	63, 107
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	441, 627
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	260, 878
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	2 cut(s)	63, 107
BseRI	GAGGAG	1 cut(s)	651
BseSI	GKGCMC	1 cut(s)	873
BshFI	GGCC	1 cut(s)	956
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	969
BsiSI	CCGG	1 cut(s)	981
BsiWI	CGTACG	1 cut(s)	819
BslFI	GGGAC	3 cut(s)	317, 457, 953
BslI	CCNNNNNNNGG	2 cut(s)	260, 878
BsmFI	GGGAC	3 cut(s)	317, 457, 953
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	956
Bsp119I	TTCGAA	2 cut(s)	476, 692
Bsp1286I	GDGCHC	2 cut(s)	873, 969
Bsp143I	GATC	3 cut(s)	274, 516, 1015
BspANI	GGCC	1 cut(s)	956
BspCNI	CTCAG	1 cut(s)	867
BspHI	TCATGA	3 cut(s)	91, 168, 367
BspLI	GGNNCC	6 cut(s)	748, 870, 941, 942, 985, 1032
BspMI	ACCTGC	3 cut(s)	262, 310, 770
BspPI	GGATC	1 cut(s)	511
BspT104I	TTCGAA	2 cut(s)	476, 692
BspT107I	GGYRCC	1 cut(s)	868
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	63, 107
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	3 cut(s)	274, 516, 1015
Bst2UI	CCWGG	2 cut(s)	441, 627
Bst4CI	ACNGT	2 cut(s)	84, 347
Bst6I	CTCTTC	2 cut(s)	36, 606
BstBAI	YACGTR	1 cut(s)	865
BstBI	TTCGAA	2 cut(s)	476, 692
BstC8I	GCNNGC	3 cut(s)	64, 434, 777
BstDEI	CTNAG	1 cut(s)	875
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	3 cut(s)	277, 519, 1018
BstMBI	GATC	3 cut(s)	274, 516, 1015
BstNI	CCWGG	2 cut(s)	441, 627
BstNSI	RCATGY	2 cut(s)	362, 436
BstSCI	CCNGG	3 cut(s)	439, 625, 979
BstSLI	GKGCMC	1 cut(s)	873
BsuRI	GGCC	1 cut(s)	956
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	2 cut(s)	51, 831
BtsIMutI	CAGTG	4 cut(s)	51, 56, 570, 831
BveI	ACCTGC	3 cut(s)	262, 310, 770
Cac8I	GCNNGC	3 cut(s)	64, 434, 777
CciI	TCATGA	3 cut(s)	91, 168, 367
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	940
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	820
CspCI	CAANNNNNGTGG	2 cut(s)	933, 968
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	1 cut(s)	875
DpnI	GATC	3 cut(s)	276, 518, 1017
DpnII	GATC	3 cut(s)	274, 516, 1015
Eam1104I	CTCTTC	2 cut(s)	36, 606
EarI	CTCTTC	2 cut(s)	36, 606
Eco47I	GGWCC	1 cut(s)	940
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	439, 625
FaqI	GGGAC	3 cut(s)	317, 457, 953
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	1015
FokI	GGATG	1 cut(s)	63
FspBI	CTAG	4 cut(s)	203, 249, 468, 1011
FspI	TGCGCA	1 cut(s)	500
GlaI	GCGC	1 cut(s)	500
GsuI	CTGGAG	2 cut(s)	279, 609
HaeIII	GGCC	1 cut(s)	956
HapII	CCGG	1 cut(s)	981
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	501
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	5 cut(s)	189, 330, 373, 575, 668
HpaII	CCGG	1 cut(s)	981
HphI	GGTGA	2 cut(s)	676, 904
Hpy166II	GTNNAC	2 cut(s)	149, 925
Hpy188I	TCNGA	3 cut(s)	574, 701, 886
Hpy188III	TCNNGA	5 cut(s)	92, 169, 368, 721, 785
Hpy8I	GTNNAC	2 cut(s)	149, 925
Hpy99I	CGWCG	2 cut(s)	532, 727
HpyAV	CCTTC	4 cut(s)	202, 532, 967, 1016
HpyCH4III	ACNGT	2 cut(s)	84, 347
HpyCH4IV	ACGT	2 cut(s)	708, 864
HpyCH4V	TGCA	5 cut(s)	233, 305, 356, 779, 842
HpyF3I	CTNAG	1 cut(s)	875
HpySE526I	ACGT	2 cut(s)	708, 864
HspAI	GCGC	1 cut(s)	499
KflI	GGGWCCC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	3 cut(s)	274, 516, 1015
LmnI	GCTCC	1 cut(s)	628
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	4 cut(s)	203, 249, 468, 1011
MaeII	ACGT	2 cut(s)	708, 864
MaeIII	GTNAC	2 cut(s)	84, 782
MalI	GATC	3 cut(s)	276, 518, 1017
MboI	GATC	3 cut(s)	274, 516, 1015
MboII	GAAGA	8 cut(s)	13, 16, 23, 191, 251, 409, 623, 714
MhlI	GDGCHC	2 cut(s)	873, 969
MluCI	AATT	8 cut(s)	472, 487, 536, 546, 557, 594, 759, 949
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	5 cut(s)	181, 262, 292, 714, 1058
MnlI	CCTC	9 cut(s)	99, 236, 254, 629, 634, 670, 721, 737, 872
MseI	TTAA	3 cut(s)	174, 597, 975
MslI	CAYNNNNRTG	4 cut(s)	128, 357, 390, 934
MspI	CCGG	1 cut(s)	981
MspR9I	CCNGG	3 cut(s)	441, 627, 981
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	2 cut(s)	441, 627
NciI	CCSGG	1 cut(s)	981
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	274, 516, 1015
NlaIV	GGNNCC	6 cut(s)	748, 870, 941, 942, 985, 1032
NmuCI	GTSAC	1 cut(s)	782
NsbI	TGCGCA	1 cut(s)	500
NspI	RCATGY	2 cut(s)	362, 436
NspV	TTCGAA	2 cut(s)	476, 692
PaeI	GCATGC	1 cut(s)	436
PagI	TCATGA	3 cut(s)	91, 168, 367
PcsI	WCGNNNNNNNCGW	2 cut(s)	482, 705
PctI	GAATGC	1 cut(s)	716
PfeI	GAWTC	4 cut(s)	189, 373, 575, 668
Pfl23II	CGTACG	1 cut(s)	819
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	865
PpuMI	RGGWCCY	1 cut(s)	940
Psp1406I	AACGTT	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	2 cut(s)	439, 625
PspGI	CCWGG	2 cut(s)	439, 625
PspLI	CGTACG	1 cut(s)	819
PspN4I	GGNNCC	6 cut(s)	748, 870, 941, 942, 985, 1032
PspPI	GGNCC	1 cut(s)	940
PspPPI	RGGWCCY	1 cut(s)	940
PsrI	GAACNNNNNNTAC	2 cut(s)	803, 835
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	4 cut(s)	128, 357, 390, 934
SaqAI	TTAA	3 cut(s)	174, 597, 975
Sau3AI	GATC	3 cut(s)	274, 516, 1015
Sau96I	GGNCC	1 cut(s)	940
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	441, 627, 981
SduI	GDGCHC	2 cut(s)	873, 969
SfaNI	GCATC	1 cut(s)	61
SfuI	TTCGAA	2 cut(s)	476, 692
SinI	GGWCC	1 cut(s)	940
SmiMI	CAYNNNNRTG	4 cut(s)	128, 357, 390, 934
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	8 cut(s)	472, 487, 536, 546, 557, 594, 759, 949
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	4 cut(s)	203, 249, 468, 1011
StyD4I	CCNGG	3 cut(s)	439, 625, 979
TaaI	ACNGT	2 cut(s)	84, 347
TaiI	ACGT	2 cut(s)	711, 867
TaqI	TCGA	7 cut(s)	198, 222, 273, 476, 530, 692, 722
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	8 cut(s)	472, 487, 536, 546, 557, 594, 759, 949
TfiI	GAWTC	4 cut(s)	189, 373, 575, 668
Tru1I	TTAA	3 cut(s)	174, 597, 975
Tru9I	TTAA	3 cut(s)	174, 597, 975
TscAI	CASTG	4 cut(s)	51, 63, 570, 831
TseFI	GTSAC	1 cut(s)	782
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	3 cut(s)	108, 157, 467
TspGWI	ACGGA	2 cut(s)	740, 807
TspRI	CASTG	4 cut(s)	51, 63, 570, 831
VpaK11BI	GGWCC	1 cut(s)	940
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	4 cut(s)	472, 487, 546, 949
XceI	RCATGY	2 cut(s)	362, 436
XspI	CTAG	4 cut(s)	203, 249, 468, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.