Prupe.4G257600_v2.0.a1

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000559
Physical Location & Seq
Forward (+)
18264795 .. 18266851
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G257600.1

Sequence Viewer

Length: 1110 bp
ATGTTTTTGTTGCTTTGCTTGTATGATTGCCCCAAAATAAAAGGCAGAAGGATCAAGTTGCAGTATGTACTAGTCTTGTCAACTTTTGCCTCAGAATTTAAGTCCTATAAATATAAGCACTCACTCCATTACACTCTCAGCATCTCAGAGTTCACTACAATGGAGCACTTTCGTTTCATTTTCCTTTCTTCTTTCCTCTATGTCATATTGCTGGTTGGAGTCTTTGCTTCTGAAGATGTATCCTGGGAGACTTACTGGCAGTCAGCTTTGCCAAAAACTCCAATACCCCAAGCTGTGCAGGAACTTTTACACCCAGAGAACTGGCCTGGGACAGAAGGCAAACGCACATACACTGGGATCAGCAAGGATGCTTTGAACATCAATACCATTCAATCCGGGTCTGCATTTCCCACTGCAGGTCCAGAAAGCTATGCCAAAGCCGCCACAGGAAAAATCCCCGTTGAGCAAGATGTTACTACTTTCTTCTTCGAAAAAGATCTGCATCTGGGGAAGAAAATGACCTTACACTTCCCCAAAACCACAAACAATGCTAAATTTTTGCCACGTCTAGTTGCAAGGGCCCAACCCTTTTCAAGCAGCAAGTTACCCGAGATTCTAAACCGCTTTTCGCTGAAACCTGAATCAGCAGAAGCAGAGATAGTGAAGCAAACAATCGAAGAATGCGAGGAACCAAGCATCGAAGGGGAAGACAAGTACTGCGCGACGTCCTTAGAATCTTTAGTCGATTTCAGTGTTTCGAAGCTCGGGAAATATGCTGAGGTGTTCTCAACAAAAGTGGACGGAGAAAACAAGCAGGAATATAGGATTGCGAGGAGAGTGGAGAAAATTGGAGAGAGGTCGGTGGTCTGCCATAAGCAGAAGTATGTGTATGCTGTGTTTTACTGCCATGAAATCCGTTCAACAAGGGCTTACAAGGTTTCTTTGGTGGGAGCTGATGGAACAAAAGCAGAAGCGGTTGCTGTTTGCCACAGCGATACAAGAAAATGGAACATTAAGCTTTTGGCTTTCCAGCTTCTCAAAGTTAAGCCAGGAACTGTCCCTATCTGCCATTTCTTGCCTAGTGGGAACCTTCTTTGGGTTCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

370

Amino Acids

41.87

Weight (kDa)

8.89

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 728
Acc36I ACCTGC 1 cut(s) 407
AccII CGCG 1 cut(s) 722
AciI CCGC 3 cut(s) 441, 622, 974
AclWI GGATC 2 cut(s) 59, 365
AcsI RAATTY 2 cut(s) 95, 554
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 2 cut(s) 69, 716
AfiI CCNNNNNNNGG 2 cut(s) 416, 1096
AgsI TTSAA 4 cut(s) 376, 392, 594, 921
AhlI ACTAGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 3 cut(s) 242, 325, 1048
AluBI AGCT 7 cut(s) 266, 293, 429, 763, 953, 1018, 1033
AluI AGCT 7 cut(s) 266, 293, 429, 763, 953, 1018, 1033
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 2 cut(s) 59, 365
AlwNI CAGNNNCTG 1 cut(s) 1055
Ama87I CYCGRG 2 cut(s) 608, 764
AoxI GGCC 2 cut(s) 323, 579
ApaI GGGCCC 1 cut(s) 583
ApeKI GCWGC 1 cut(s) 597
ApoI RAATTY 2 cut(s) 95, 554
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 3 cut(s) 419, 579, 580
AsuC2I CCSGG 1 cut(s) 397
AsuII TTCGAA 2 cut(s) 489, 758
AvaI CYCGRG 2 cut(s) 608, 764
AvaII GGWCC 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 609
BccI CCATC 1 cut(s) 950
BciT130I CCWGG 3 cut(s) 244, 327, 1050
BciVI GTATCC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 4 cut(s) 71, 569, 1080, 1108
BfmI CTRYAG 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 1 cut(s) 250
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 441, 598
BlsI GCNGC 2 cut(s) 442, 599
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 4 cut(s) 244, 327, 397, 1050
Bme18I GGWCC 1 cut(s) 419
BmeT110I CYCGRG 2 cut(s) 608, 764
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 3 cut(s) 419, 579, 580
BmiI GGNNCC 4 cut(s) 581, 690, 1088, 1101
BmrFI CCNGG 4 cut(s) 244, 327, 397, 1050
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 4 cut(s) 150, 358, 511, 705
BmuI ACTGGG 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 770, 802
Bpu10I CCTNAGC 1 cut(s) 777
Bpu14I TTCGAA 2 cut(s) 489, 758
BpuMI CCSGG 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 243, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 1096
Bse1I ACTGG 3 cut(s) 260, 326, 358
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 3 cut(s) 244, 327, 1050
BseDI CCNNGG 2 cut(s) 243, 326
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 416, 1096
BseMII CTCAG 4 cut(s) 105, 151, 159, 768
BseNI ACTGG 3 cut(s) 260, 326, 358
BseRI GAGGAG 1 cut(s) 847
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 2 cut(s) 325, 581
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 2 cut(s) 608, 764
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 2 cut(s) 343, 1043
BslI CCNNNNNNNGG 2 cut(s) 416, 1096
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 343, 1043
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 325, 581
BsoBI CYCGRG 2 cut(s) 608, 764
Bsp119I TTCGAA 2 cut(s) 489, 758
Bsp120I GGGCCC 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 168, 583
Bsp143I GATC 3 cut(s) 51, 357, 496
BspACI CCGC 3 cut(s) 441, 622, 974
BspANI GGCC 2 cut(s) 325, 581
BspCNI CTCAG 4 cut(s) 104, 150, 158, 769
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 4 cut(s) 581, 690, 1088, 1101
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 2 cut(s) 59, 365
BspT104I TTCGAA 2 cut(s) 489, 758
BsrI ACTGG 3 cut(s) 260, 326, 358
BssECI CCNNGG 2 cut(s) 243, 326
BssMI GATC 3 cut(s) 51, 357, 496
BssNI GRCGYC 1 cut(s) 725
Bst2UI CCWGG 3 cut(s) 244, 327, 1050
Bst4CI ACNGT 1 cut(s) 1057
BstACI GRCGYC 1 cut(s) 725
BstBI TTCGAA 2 cut(s) 489, 758
BstDEI CTNAG 5 cut(s) 91, 137, 145, 730, 777
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 722
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 3 cut(s) 54, 360, 499
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 51, 357, 496
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 3 cut(s) 244, 327, 1050
BstSCI CCNGG 4 cut(s) 242, 325, 395, 1048
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 2 cut(s) 325, 581
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 351, 411, 757
BveI ACCTGC 1 cut(s) 407
CaiI CAGNNNCTG 1 cut(s) 1055
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 3 cut(s) 419, 579, 580
Csp6I GTAC 2 cut(s) 68, 715
CspCI CAANNNNNGTGG 2 cut(s) 777, 812
CviAII CATG 1 cut(s) 908
CviQI GTAC 2 cut(s) 68, 715
DdeI CTNAG 5 cut(s) 91, 137, 145, 730, 777
DpnI GATC 3 cut(s) 53, 359, 498
DpnII GATC 3 cut(s) 51, 357, 496
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 2 cut(s) 608, 764
EcoO109I RGGNCCY 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 242, 325, 1048
EcoT38I GRGCYC 1 cut(s) 583
FaeI CATG 1 cut(s) 911
FaqI GGGAC 2 cut(s) 343, 1043
FatI CATG 1 cut(s) 907
Fnu4HI GCNGC 2 cut(s) 441, 598
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 2 cut(s) 441, 598
FspBI CTAG 4 cut(s) 71, 569, 1080, 1108
GlaI GCGC 1 cut(s) 721
GluI GCNGC 2 cut(s) 441, 598
HaeIII GGCC 2 cut(s) 325, 581
HapII CCGG 1 cut(s) 396
HhaI GCGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 1 cut(s) 911
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 4 cut(s) 219, 613, 641, 734
HpaII CCGG 1 cut(s) 396
Hpy166II GTNNAC 3 cut(s) 81, 153, 799
Hpy188I TCNGA 3 cut(s) 94, 148, 232
Hpy188III TCNNGA 2 cut(s) 422, 766
Hpy8I GTNNAC 3 cut(s) 81, 153, 799
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 4 cut(s) 42, 329, 695, 1100
HpyCH4III ACNGT 1 cut(s) 1057
HpyCH4IV ACGT 2 cut(s) 565, 725
HpyCH4V TGCA 6 cut(s) 61, 298, 404, 416, 502, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 5 cut(s) 91, 137, 145, 730, 777
HpySE526I ACGT 2 cut(s) 565, 725
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 1 cut(s) 911
HspAI GCGC 1 cut(s) 720
Kzo9I GATC 3 cut(s) 51, 357, 496
LmnI GCTCC 2 cut(s) 163, 950
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 4 cut(s) 150, 358, 511, 705
MaeI CTAG 4 cut(s) 71, 569, 1080, 1108
MaeII ACGT 2 cut(s) 565, 725
MaeIII GTNAC 2 cut(s) 472, 603
MalI GATC 3 cut(s) 53, 359, 498
MboI GATC 3 cut(s) 51, 357, 496
MboII GAAGA 7 cut(s) 180, 245, 475, 478, 523, 689, 719
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 168, 583
MluCI AATT 3 cut(s) 95, 554, 846
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 6 cut(s) 100, 206, 679, 772, 825, 849
MseI TTAA 3 cut(s) 99, 1014, 1044
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 4 cut(s) 244, 327, 397, 1050
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 3 cut(s) 244, 327, 1050
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 1 cut(s) 440
NciI CCSGG 1 cut(s) 397
NdeII GATC 3 cut(s) 51, 357, 496
NlaIII CATG 1 cut(s) 911
NlaIV GGNNCC 4 cut(s) 581, 690, 1088, 1101
NspV TTCGAA 2 cut(s) 489, 758
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 613, 641, 734
PkrI GCNGC 2 cut(s) 442, 599
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 3 cut(s) 242, 325, 1048
PspGI CCWGG 3 cut(s) 242, 325, 1048
PspN4I GGNNCC 4 cut(s) 581, 690, 1088, 1101
PspOMI GGGCCC 1 cut(s) 579
PspPI GGNCC 3 cut(s) 419, 579, 580
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 2 cut(s) 69, 716
RsaNI GTAC 2 cut(s) 68, 715
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 99, 1014, 1044
SatI GCNGC 2 cut(s) 441, 598
Sau3AI GATC 3 cut(s) 51, 357, 496
Sau96I GGNCC 3 cut(s) 419, 579, 580
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 4 cut(s) 244, 327, 397, 1050
SduI GDGCHC 2 cut(s) 168, 583
SfaNI GCATC 4 cut(s) 150, 358, 511, 705
SfcI CTRYAG 1 cut(s) 414
SfuI TTCGAA 2 cut(s) 489, 758
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 3 cut(s) 95, 554, 846
SsiI CCGC 3 cut(s) 441, 622, 974
SspMI CTAG 4 cut(s) 71, 569, 1080, 1108
StyD4I CCNGG 4 cut(s) 242, 325, 395, 1048
TaaI ACNGT 1 cut(s) 1057
TaiI ACGT 2 cut(s) 568, 728
TaqI TCGA 5 cut(s) 489, 675, 699, 744, 758
TasI AATT 3 cut(s) 95, 554, 846
TatI WGTACW 2 cut(s) 67, 714
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 3 cut(s) 613, 641, 734
Tru1I TTAA 3 cut(s) 99, 1014, 1044
Tru9I TTAA 3 cut(s) 99, 1014, 1044
TscAI CASTG 3 cut(s) 358, 418, 757
TseI GCWGC 1 cut(s) 597
TspDTI ATGAA 2 cut(s) 166, 924
TspGWI ACGGA 2 cut(s) 816, 905
TspRI CASTG 3 cut(s) 358, 418, 757
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 95, 554
XspI CTAG 4 cut(s) 71, 569, 1080, 1108
ZraI GACGTC 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.