Prupe.4G169000_v2.0.a1

BURP domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000559
Physical Location & Seq
Forward (+)
9880027 .. 9884029
4003 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G169000.1

Sequence Viewer

Length: 981 bp
ATGGGGTTTCATCTCCAACTCATCTTTGCTCTTCTCAGTCTAGCAGCGGTGGCACTGGCAAACCATGCTGCTCAACCAGCACCTCAACTTTACTGGAACTCCGTCCTGCCAAACACACAGATGCCAAGAGCTATCAGTGAACTTCTGCATCCTGACTCCACAAATGAAGAAAAGAGCACAAATATCATGAATGCTGTTGGGAATGGAAAGCCAACTGACCACAAGGGCAAACCTGAAAATATCCCATTGGCACTTATATTTTATAACAAGAGATATGATCATCCCACTGACAATCAACTCCATTATAAAAACGTAGCTATTTTCTTCTTGGAGAAGGACATGCGCCCTGGAGCAACAACGAACTTCCAATTCCCTAGAAATTCAAACACGGCTGCTTTCCTATCACGCGAAAGTGCCCAATCGATCCCCTTCTCCTCTAACAAACTATCAGAAATTTTCAACCATTTTTCAGTGAAACCAACATCTGTGGAAGCCAAAACAATTAAGCAAACAATCGAAGAGTGTGAAGCTCCAGGCGTTAAGGGAGAGGAAAAATATTGCGCCACATCTTTAGAATCAATGGTTGATTTTAGCACTTCGAAGCTTAGAACAAGAAACGTTCAAGCAATCTCGACGGAGGTATTGGAAAAAGGAGCCACCATGTCCATGCACAAGTATACAACAATGCCGGGACTGAAGAAGCTGGCAGGTGACAAAGTCGTTGTGTGTCATAAGCAGAACTATCCCTATGCTGTGTTTTACTGCCATGCAATAAAACCAATAGCAGCTTATGTTCTCTCCCTGAAAGGCGATGATGGGGTGAAGGTTAAAGCAGTAGCCATCTGCCATCTAGACACATCAGAATGGAACCCAATGCATTTGGCCTTCCAAATCCTCAAAGTTAAGCCCGGAAAAATTCCTATCTGCCATTTCCTTCCCACTGATCATATTGTCTGGGTTCCGAACCACAAATCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

327

Amino Acids

36.32

Weight (kDa)

8.96

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 264, 306
AarI CACCTGC 1 cut(s) 698
Acc36I ACCTGC 1 cut(s) 698
AccI GTMKAC 1 cut(s) 677
AccII CGCG 1 cut(s) 408
AciI CCGC 1 cut(s) 47
AclI AACGTT 1 cut(s) 618
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 3 cut(s) 379, 453, 915
AcuI CTGAAG 1 cut(s) 716
AgsI TTSAA 3 cut(s) 384, 460, 623
AjnI CCWGG 2 cut(s) 346, 532
AluBI AGCT 6 cut(s) 131, 317, 530, 604, 703, 788
AluI AGCT 6 cut(s) 131, 317, 530, 604, 703, 788
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 882
ApeKI GCWGC 4 cut(s) 44, 68, 392, 785
ApoI RAATTY 3 cut(s) 379, 453, 915
AspLEI GCGC 2 cut(s) 345, 563
AsuC2I CCSGG 2 cut(s) 690, 909
AsuHPI GGTGA 2 cut(s) 722, 832
AsuII TTCGAA 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 55, 56, 379, 797
BccI CCATC 3 cut(s) 809, 848, 855
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 2 cut(s) 348, 534
BclI TGATCA 2 cut(s) 277, 943
BcnI CCSGG 2 cut(s) 690, 909
BfaI CTAG 3 cut(s) 41, 375, 851
BfuAI ACCTGC 1 cut(s) 698
BisI GCNGC 4 cut(s) 45, 69, 393, 786
BlsI GCNGC 4 cut(s) 46, 70, 394, 787
Bme1390I CCNGG 4 cut(s) 348, 534, 690, 909
BmiI GGNNCC 3 cut(s) 655, 869, 960
BmrFI CCNGG 4 cut(s) 348, 534, 690, 909
BmsI GCATC 2 cut(s) 111, 157
BpmI CTGGAG 2 cut(s) 369, 516
Bpu14I TTCGAA 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 690, 909
Bsa29I ATCGAT 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 2 cut(s) 60, 98
BseBI CCWGG 2 cut(s) 348, 534
BseCI ATCGAT 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 2 cut(s) 148, 280
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 60, 98
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 4 cut(s) 55, 56, 379, 797
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 884
BshVI ATCGAT 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 689, 909
BslFI GGGAC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 705
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 884
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 179, 418
Bsp143I GATC 3 cut(s) 277, 423, 943
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 884
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 422
BspFNI CGCG 1 cut(s) 408
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 655, 869, 960
BspMI ACCTGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 599
BsrI ACTGG 2 cut(s) 60, 98
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 277, 423, 943
BssNAI GTATAC 1 cut(s) 678
Bst1107I GTATAC 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 348, 534
Bst6I CTCTTC 2 cut(s) 36, 513
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 2 cut(s) 35, 605
BstF5I GGATG 2 cut(s) 148, 280
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 345, 563
BstKTI GATC 3 cut(s) 280, 426, 946
BstMBI GATC 3 cut(s) 277, 423, 943
BstMWI GCNNNNNNNGC 3 cut(s) 50, 65, 77
BstNI CCWGG 2 cut(s) 348, 534
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 4 cut(s) 346, 532, 688, 907
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 4 cut(s) 55, 56, 379, 797
BstZ17I GTATAC 1 cut(s) 678
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 1 cut(s) 884
BsuTUI ATCGAT 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 2 cut(s) 148, 280
BtsIMutI CAGTG 5 cut(s) 53, 142, 285, 477, 939
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 1 cut(s) 705
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 345, 563
ClaI ATCGAT 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 7 cut(s) 65, 187, 340, 661, 667, 767, 978
DdeI CTNAG 2 cut(s) 35, 605
DpnI GATC 3 cut(s) 279, 425, 945
DpnII GATC 3 cut(s) 277, 423, 943
Eam1104I CTCTTC 2 cut(s) 36, 513
EarI CTCTTC 2 cut(s) 36, 513
Eco57I CTGAAG 1 cut(s) 716
EcoRII CCWGG 2 cut(s) 346, 532
EcoT22I ATGCAT 1 cut(s) 879
FaeI CATG 7 cut(s) 68, 190, 343, 664, 670, 770, 981
FaqI GGGAC 1 cut(s) 705
FatI CATG 7 cut(s) 64, 186, 339, 660, 666, 766, 977
FbaI TGATCA 2 cut(s) 277, 943
FblI GTMKAC 1 cut(s) 677
Fnu4HI GCNGC 4 cut(s) 45, 69, 393, 786
FokI GGATG 2 cut(s) 135, 267
Fsp4HI GCNGC 4 cut(s) 45, 69, 393, 786
FspBI CTAG 3 cut(s) 41, 375, 851
GlaI GCGC 2 cut(s) 344, 562
GluI GCNGC 4 cut(s) 45, 69, 393, 786
GsuI CTGGAG 2 cut(s) 369, 516
HaeIII GGCC 1 cut(s) 884
HapII CCGG 2 cut(s) 689, 909
HhaI GCGC 2 cut(s) 345, 563
Hin1II CATG 7 cut(s) 68, 190, 343, 664, 670, 770, 981
Hin6I GCGC 2 cut(s) 343, 561
HinP1I GCGC 2 cut(s) 343, 561
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 155, 575
HpaII CCGG 2 cut(s) 689, 909
HphI GGTGA 2 cut(s) 722, 832
Hpy166II GTNNAC 2 cut(s) 140, 678
Hpy188I TCNGA 3 cut(s) 451, 862, 963
Hpy188III TCNNGA 4 cut(s) 152, 187, 631, 851
Hpy8I GTNNAC 2 cut(s) 140, 678
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 5 cut(s) 328, 439, 817, 895, 944
HpyCH4IV ACGT 2 cut(s) 312, 618
HpyCH4V TGCA 5 cut(s) 148, 670, 770, 877, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 65, 77
HpyF3I CTNAG 2 cut(s) 35, 605
HpySE526I ACGT 2 cut(s) 312, 618
Hsp92II CATG 7 cut(s) 68, 190, 343, 664, 670, 770, 981
HspAI GCGC 2 cut(s) 343, 561
Ksp22I TGATCA 2 cut(s) 277, 943
Kzo9I GATC 3 cut(s) 277, 423, 943
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 350, 535, 653
Lsp1109I GCAGC 4 cut(s) 55, 56, 379, 797
LweI GCATC 2 cut(s) 111, 157
MaeI CTAG 3 cut(s) 41, 375, 851
MaeII ACGT 2 cut(s) 312, 618
MaeIII GTNAC 1 cut(s) 710
MalI GATC 3 cut(s) 279, 425, 945
MboI GATC 3 cut(s) 277, 423, 943
MboII GAAGA 5 cut(s) 23, 179, 316, 530, 709
MhlI GDGCHC 2 cut(s) 179, 418
MluCI AATT 5 cut(s) 368, 379, 453, 501, 915
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 5 cut(s) 93, 445, 541, 631, 905
Mph1103I ATGCAT 1 cut(s) 879
MseI TTAA 4 cut(s) 504, 540, 828, 903
MslI CAYNNNNRTG 3 cut(s) 119, 665, 862
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 689, 909
MspR9I CCNGG 4 cut(s) 348, 534, 690, 909
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 348, 534
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 50, 65, 77
NciI CCSGG 2 cut(s) 690, 909
NdeII GATC 3 cut(s) 277, 423, 943
NlaIII CATG 7 cut(s) 68, 190, 343, 664, 670, 770, 981
NlaIV GGNNCC 3 cut(s) 655, 869, 960
NmuCI GTSAC 1 cut(s) 710
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 1 cut(s) 343
NspV TTCGAA 1 cut(s) 599
PagI TCATGA 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 575
PflFI GACNNNGTC 1 cut(s) 716
PkrI GCNGC 4 cut(s) 46, 70, 394, 787
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PsiI TTATAA 2 cut(s) 264, 306
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 346, 532
PspGI CCWGG 2 cut(s) 346, 532
PspN4I GGNNCC 3 cut(s) 655, 869, 960
PsyI GACNNNGTC 1 cut(s) 716
RseI CAYNNNNRTG 3 cut(s) 119, 665, 862
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 504, 540, 828, 903
SatI GCNGC 4 cut(s) 45, 69, 393, 786
Sau3AI GATC 3 cut(s) 277, 423, 943
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 348, 534, 690, 909
SduI GDGCHC 2 cut(s) 179, 418
SfaNI GCATC 2 cut(s) 111, 157
SfuI TTCGAA 1 cut(s) 599
SmiMI CAYNNNNRTG 3 cut(s) 119, 665, 862
Sse9I AATT 5 cut(s) 368, 379, 453, 501, 915
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 41, 375, 851
StyD4I CCNGG 4 cut(s) 346, 532, 688, 907
TaiI ACGT 2 cut(s) 315, 621
TaqI TCGA 4 cut(s) 422, 516, 599, 632
TasI AATT 5 cut(s) 368, 379, 453, 501, 915
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 4 cut(s) 504, 540, 828, 903
Tru9I TTAA 4 cut(s) 504, 540, 828, 903
TscAI CASTG 5 cut(s) 60, 142, 292, 477, 946
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 4 cut(s) 44, 68, 392, 785
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 2 cut(s) 180, 203
TspGWI ACGGA 2 cut(s) 91, 650
TspRI CASTG 5 cut(s) 60, 142, 292, 477, 946
Tth111I GACNNNGTC 1 cut(s) 716
XapI RAATTY 3 cut(s) 379, 453, 915
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 677
XspI CTAG 3 cut(s) 41, 375, 851
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.