Rroxscaffold_4G00299720

Dehydration-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000559
Physical Location & Seq
Forward (+)
19662866 .. 19669314
6449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299720.1

Sequence Viewer

Length: 939 bp
ATGGATCAGTTTCGTCTTCTTTGGCTGTTTGCAATTTTCTATGTGGCATCAGTAGTGGTGGGAATTGGGTATTCTAATAAGGTCGGTGATGGCAAGTCCTGGATGTCTTACTGGAATTCAGCTTTGCCAAAATCTCCATTACCTTCCAAAGCTGTACAGCAACTTCTAAACCTTGCAGAAGGTGAAAGAAGTTACAGTGGGATTGGAAAGGATAGTGTAAGTGGCTGCAGCTGTTTTAGCTGTTATGGCTGTACAGAAGAAGTCAAAGTGAAGCCAGGTTTAACTACATACTTCCAAGAGAAAGATCTTCAGCATTTGGGAAAAAAGGTGACGTTGCAATTCTTGAAACCCACAGATAACAACGCAACTCTTTTGCCTCGTAAAGTTGTAAAGTCCATACCCTTTTCAAGCAACAAGTTGCCAGAAATACTAATATACTTTGGAGTGAAGCCCATGTCGGCGGTTGCAGAAATAATGAAAAGCACAATCGAAGAGTGTGAGGCACCGGCAATTAAAGGCGAAGACAAGTACTGCGCAACATCGTTAGAATCCTTGATTGATTTCACGGTTTCAAAGCTTGGGAAGTACGTCCAAGTTTATGCAACCGAGGCCGAAAACAATAACGAAAACAAACAAGAATATAGCATTGAGATTACTGGAGTCCGAAGTATTGGAGACAGCTCGGTTGTGTGCCATAAGGAGAGCTATGTGTATGGTGTGTTTTACTGCCACAAATTCAATAACACAAGGGCTTACATGGTTCCGTTGGTTGGTGCTGATGGAGTTGCGAAAGTTAAAGCATTAGTTGTTTGCCATACTGACACCACTAGCTGGAATCCTAAGCATTTGGCCTTTCAAGTCCTCAAAATAAAGCCTGGAAATACAATCGATGTCTGTCATTTTCTAGCCACTACCGGTCTTTTGTGGGTTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

312

Amino Acids

34.57

Weight (kDa)

8.4

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 97 - 311 1.2e-77 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25610
fragaria_vesca FvH4_2g36250 FvH4_2g36250 FvH4_2g36250 FvH4_7g14680
malus_domestica MD04G1018200.v1.1 MD08G1119600.v1.1 MD08G1119700.v1.1 MD08G1119800.v1.1 MD08G1199500.v1.1 MD08G1203300.v1.1 MD15G1098800.v1.1 MD15G1219500.v1.1
prunus_persica Prupe.1G453500_v2.0.a1 Prupe.1G453600_v2.0.a1 Prupe.1G453700_v2.0.a1 Prupe.1G465600_v2.0.a1 Prupe.1G475100_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475200_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475300_v2.0.a1 Prupe.1G475400_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475500_v2.0.a1 Prupe.1G475800_v2.0.a1 Prupe.1G475900_v2.0.a1 Prupe.1G476200_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476500_v2.0.a1 Prupe.1G476700_v2.0.a1 Prupe.1G477000_v2.0.a1 Prupe.1G477200_v2.0.a1 Prupe.1G477400_v2.0.a1 Prupe.1G477800_v2.0.a1 Prupe.4G169000_v2.0.a1 Prupe.4G257600_v2.0.a1
pyrus_communis pycom08g16760 pycom14g01650 pycom15g09040 pycom15g09070
rosa_chinensis RchiOBHm_Chr1g0356161 RchiOBHm_Chr1g0356461 RchiOBHm_Chr5g0051031
rosa_laevigata RLG00000010869 RLG00000028095 RLG00000028100 RLG00000034755
rosa_multiflora Rmu_co8314191.1_g000001 Rmu_co8337567.1_g000001 Rmu_sc0000281.1_g000019 Rmu_sc0000446.1_g000034 Rmu_sc0000782.1_g000019 Rmu_sc0001809.1_g000027 Rmu_sc0013768.1_g000023
rosa_roxburghii Rroxscaffold_1G00029620 Rroxscaffold_4G00299510 Rroxscaffold_4G00299720 Rroxscaffold_7G00162480
rosa_rugosa Rorug01G0249900 Rorug01G0250000 Rorug05G0572100 Rorug06G0342600
rosa_samantha Rh1AG262800 Rh1AG263300 Rh1AG263600 Rh1BG231500 Rh1CG246400 Rh1CG246900 Rh1DG259200 Rh5AG337800 Rh5BG347500 Rh5CG374800 Rh5DG360600 Rh6BG447100 Rh6CG468100 Rh6DG454900
rosa_wichuraiana Rw1G023250 Rw1G023300 Rw5G031920 Rw6G039620 Rw7G036720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 831
AciI CCGC 1 cut(s) 461
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 115, 734
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 4 cut(s) 156, 253, 530, 587
AfiI CCNNNNNNNGG 2 cut(s) 770, 831
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 5 cut(s) 346, 408, 573, 739, 857
AjnI CCWGG 3 cut(s) 98, 274, 874
AluBI AGCT 8 cut(s) 122, 152, 231, 240, 577, 681, 705, 831
AluI AGCT 8 cut(s) 122, 152, 231, 240, 577, 681, 705, 831
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 609, 849
ApeKI GCWGC 2 cut(s) 225, 228
ApoI RAATTY 2 cut(s) 115, 734
AsiGI ACCGGT 1 cut(s) 914
AspLEI GCGC 1 cut(s) 536
AsuHPI GGTGA 3 cut(s) 98, 194, 340
BanI GGYRCC 1 cut(s) 502
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 2 cut(s) 8, 528
BbvI GCAGC 2 cut(s) 212, 240
BccI CCATC 2 cut(s) 83, 773
BciT130I CCWGG 3 cut(s) 100, 276, 876
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 2 cut(s) 828, 905
BfmI CTRYAG 1 cut(s) 226
BglII AGATCT 1 cut(s) 304
BisI GCNGC 2 cut(s) 226, 229
BlsI GCNGC 2 cut(s) 227, 230
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 100, 276, 876
BmiI GGNNCC 3 cut(s) 504, 762, 930
BmrFI CCNGG 3 cut(s) 100, 276, 876
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 2 cut(s) 8, 528
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 840
Bsa29I ATCGAT 1 cut(s) 888
BsaJI CCNNGG 1 cut(s) 606
BsaWI WCCGGW 1 cut(s) 914
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 831
Bse118I RCCGGY 2 cut(s) 505, 914
Bse1I ACTGG 2 cut(s) 116, 661
BseBI CCWGG 3 cut(s) 100, 276, 876
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 770, 831
BseNI ACTGG 2 cut(s) 116, 661
BseXI GCAGC 2 cut(s) 212, 240
BshFI GGCC 2 cut(s) 611, 851
BshNI GGYRCC 1 cut(s) 502
BshTI ACCGGT 1 cut(s) 914
BshVI ATCGAT 1 cut(s) 888
BsiSI CCGG 2 cut(s) 506, 915
BslI CCNNNNNNNGG 2 cut(s) 770, 831
BsmAI GTCTC 1 cut(s) 669
BsnI GGCC 2 cut(s) 611, 851
Bsp1407I TGTACA 2 cut(s) 154, 251
Bsp143I GATC 2 cut(s) 4, 304
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 611, 851
BspDI ATCGAT 1 cut(s) 888
BspLI GGNNCC 3 cut(s) 504, 762, 930
BspMAI CTGCAG 1 cut(s) 230
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 505, 914
BsrGI TGTACA 2 cut(s) 154, 251
BsrI ACTGG 2 cut(s) 116, 661
BssAI RCCGGY 2 cut(s) 505, 914
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 2 cut(s) 4, 304
Bst2UI CCWGG 3 cut(s) 100, 276, 876
Bst4CI ACNGT 2 cut(s) 197, 568
Bst6I CTCTTC 1 cut(s) 486
BstAUI TGTACA 2 cut(s) 154, 251
BstDEI CTNAG 1 cut(s) 840
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 2 cut(s) 7, 307
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 2 cut(s) 4, 304
BstMWI GCNNNNNNNGC 3 cut(s) 237, 246, 608
BstNI CCWGG 3 cut(s) 100, 276, 876
BstSCI CCNGG 3 cut(s) 98, 274, 874
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 212, 240
BstV2I GAAGAC 2 cut(s) 8, 528
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 888
BsuRI GGCC 2 cut(s) 611, 851
BsuTUI ATCGAT 1 cut(s) 888
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 202
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 2 cut(s) 505, 914
ClaI ATCGAT 1 cut(s) 888
Csp6I GTAC 4 cut(s) 155, 252, 529, 586
CspAI ACCGGT 1 cut(s) 914
CviAII CATG 2 cut(s) 454, 757
CviQI GTAC 4 cut(s) 155, 252, 529, 586
DdeI CTNAG 1 cut(s) 840
DpnI GATC 2 cut(s) 6, 306
DpnII GATC 2 cut(s) 4, 304
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 98, 274, 874
FaeI CATG 2 cut(s) 457, 760
FatI CATG 2 cut(s) 453, 756
Fnu4HI GCNGC 2 cut(s) 226, 229
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 2 cut(s) 226, 229
FspBI CTAG 2 cut(s) 828, 905
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 1 cut(s) 535
GluI GCNGC 2 cut(s) 226, 229
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 2 cut(s) 611, 851
HapII CCGG 2 cut(s) 506, 915
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 457, 760
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 3 cut(s) 548, 660, 835
HpaII CCGG 2 cut(s) 506, 915
HphI GGTGA 3 cut(s) 98, 194, 340
Hpy188I TCNGA 1 cut(s) 665
Hpy188III TCNNGA 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 153, 173
HpyCH4III ACNGT 2 cut(s) 197, 568
HpyCH4IV ACGT 2 cut(s) 332, 588
HpyCH4V TGCA 6 cut(s) 32, 176, 228, 337, 467, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 246, 608
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 2 cut(s) 332, 588
Hsp92II CATG 2 cut(s) 457, 760
HspAI GCGC 1 cut(s) 534
Kzo9I GATC 2 cut(s) 4, 304
Lsp1109I GCAGC 2 cut(s) 212, 240
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 828, 905
MaeII ACGT 2 cut(s) 332, 588
MaeIII GTNAC 2 cut(s) 191, 328
MalI GATC 2 cut(s) 6, 306
MboI GATC 2 cut(s) 4, 304
MboII GAAGA 5 cut(s) 8, 269, 299, 503, 533
MflI RGATCY 1 cut(s) 304
MluCI AATT 6 cut(s) 33, 63, 115, 338, 510, 734
MlyI GAGTC 1 cut(s) 669
MnlI CCTC 4 cut(s) 387, 493, 601, 872
MseI TTAA 3 cut(s) 281, 513, 795
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 506, 915
MspR9I CCNGG 3 cut(s) 100, 276, 876
MvaI CCWGG 3 cut(s) 100, 276, 876
MwoI GCNNNNNNNGC 3 cut(s) 237, 246, 608
NdeII GATC 2 cut(s) 4, 304
NlaIII CATG 2 cut(s) 457, 760
NlaIV GGNNCC 3 cut(s) 504, 762, 930
NmuCI GTSAC 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 535
PfeI GAWTC 2 cut(s) 548, 835
PflMI CCANNNNNTGG 1 cut(s) 831
PfoI TCCNGGA 1 cut(s) 98
PinAI ACCGGT 1 cut(s) 914
PkrI GCNGC 2 cut(s) 227, 230
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
Psp6I CCWGG 3 cut(s) 98, 274, 874
PspGI CCWGG 3 cut(s) 98, 274, 874
PspN4I GGNNCC 3 cut(s) 504, 762, 930
PstI CTGCAG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 4 cut(s) 156, 253, 530, 587
RsaNI GTAC 4 cut(s) 155, 252, 529, 586
SaqAI TTAA 3 cut(s) 281, 513, 795
SatI GCNGC 2 cut(s) 226, 229
Sau3AI GATC 2 cut(s) 4, 304
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 3 cut(s) 100, 276, 876
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 226
Sse9I AATT 6 cut(s) 33, 63, 115, 338, 510, 734
SsiI CCGC 1 cut(s) 461
SspMI CTAG 2 cut(s) 828, 905
StyD4I CCNGG 3 cut(s) 98, 274, 874
TaaI ACNGT 2 cut(s) 197, 568
TaiI ACGT 2 cut(s) 335, 591
TaqI TCGA 2 cut(s) 489, 888
TasI AATT 6 cut(s) 33, 63, 115, 338, 510, 734
TatI WGTACW 3 cut(s) 154, 251, 528
TfiI GAWTC 2 cut(s) 548, 835
Tru1I TTAA 3 cut(s) 281, 513, 795
Tru9I TTAA 3 cut(s) 281, 513, 795
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 225, 228
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 831
XapI RAATTY 2 cut(s) 115, 734
XspI CTAG 2 cut(s) 828, 905
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.